HEADER SUGAR BINDING PROTEIN 19-NOV-16 5H7N TITLE CRYSTAL STRUCTURE OF HUMAN NLRP12-PYD WITH A MBP TAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLRP12-PYD WITH MBP TAG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MALTOSE BINDING PROTEIN, CRYSTALLIZATION TAG, DEATH FOLD, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.C.JIN,T.S.XIAO REVDAT 3 08-NOV-23 5H7N 1 HETSYN REVDAT 2 29-JUL-20 5H7N 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 15-FEB-17 5H7N 0 JRNL AUTH T.C.JIN,W.CHUENCHOR,J.JIANG,J.CHENG,Y.LI,K.FANG,M.HUANG, JRNL AUTH 2 P.SMITH,T.S.XIAO JRNL TITL DESIGN OF AN EXPRESSION SYSTEM TO ENHANCE MBP-MEDIATED JRNL TITL 2 CRYSTALLIZATION JRNL REF SCI REP V. 7 40991 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28112203 JRNL DOI 10.1038/SREP40991 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 158517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1973 - 5.6112 0.99 5603 144 0.1557 0.1817 REMARK 3 2 5.6112 - 4.4549 1.00 5582 148 0.1420 0.1766 REMARK 3 3 4.4549 - 3.8920 0.99 5551 136 0.1411 0.1954 REMARK 3 4 3.8920 - 3.5363 0.99 5587 148 0.1582 0.1851 REMARK 3 5 3.5363 - 3.2829 0.99 5593 149 0.1778 0.2219 REMARK 3 6 3.2829 - 3.0894 0.99 5658 144 0.1874 0.2398 REMARK 3 7 3.0894 - 2.9347 0.99 5545 149 0.1901 0.2002 REMARK 3 8 2.9347 - 2.8070 0.99 5531 140 0.1871 0.2223 REMARK 3 9 2.8070 - 2.6989 0.99 5579 139 0.1770 0.2699 REMARK 3 10 2.6989 - 2.6058 0.98 5571 139 0.1815 0.2284 REMARK 3 11 2.6058 - 2.5243 0.99 5517 140 0.1894 0.2474 REMARK 3 12 2.5243 - 2.4522 0.99 5588 145 0.1869 0.2552 REMARK 3 13 2.4522 - 2.3876 0.99 5547 135 0.1927 0.2500 REMARK 3 14 2.3876 - 2.3294 0.99 5556 146 0.1997 0.2728 REMARK 3 15 2.3294 - 2.2764 0.98 5514 143 0.2061 0.2852 REMARK 3 16 2.2764 - 2.2280 0.98 5518 136 0.2129 0.2946 REMARK 3 17 2.2280 - 2.1834 0.99 5607 143 0.2130 0.2807 REMARK 3 18 2.1834 - 2.1422 0.98 5523 125 0.2206 0.2771 REMARK 3 19 2.1422 - 2.1039 0.98 5502 154 0.2217 0.2469 REMARK 3 20 2.1039 - 2.0683 0.98 5597 142 0.2334 0.2738 REMARK 3 21 2.0683 - 2.0349 0.98 5431 118 0.2477 0.3133 REMARK 3 22 2.0349 - 2.0036 0.98 5600 155 0.2596 0.2852 REMARK 3 23 2.0036 - 1.9741 0.98 5436 142 0.2724 0.3714 REMARK 3 24 1.9741 - 1.9463 0.98 5487 133 0.2960 0.3421 REMARK 3 25 1.9463 - 1.9200 0.98 5486 135 0.3003 0.3882 REMARK 3 26 1.9200 - 1.8951 0.97 5570 154 0.3276 0.3422 REMARK 3 27 1.8951 - 1.8714 0.98 5445 133 0.3458 0.3741 REMARK 3 28 1.8714 - 1.8489 0.87 4855 123 0.3836 0.4271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7454 REMARK 3 ANGLE : 1.310 10114 REMARK 3 CHIRALITY : 0.081 1123 REMARK 3 PLANARITY : 0.009 1285 REMARK 3 DIHEDRAL : 3.226 6066 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5H7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IFP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 550, 0.2M AMMONIUM SULFATE, REMARK 280 NAAC 4.6, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 403 REMARK 465 GLY A 404 REMARK 465 ARG A 461 REMARK 465 ASP A 462 REMARK 465 THR A 463 REMARK 465 PRO A 464 REMARK 465 PRO A 465 REMARK 465 GLY A 466 REMARK 465 GLY A 467 REMARK 465 PRO A 468 REMARK 465 SER A 469 REMARK 465 SER A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 MET B 1 REMARK 465 ASP B 462 REMARK 465 THR B 463 REMARK 465 PRO B 464 REMARK 465 PRO B 465 REMARK 465 GLY B 466 REMARK 465 GLY B 467 REMARK 465 PRO B 468 REMARK 465 SER B 469 REMARK 465 SER B 470 REMARK 465 LEU B 471 REMARK 465 GLU B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 465 HIS B 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 745 O HOH A 792 2.05 REMARK 500 O GLY A 406 NE2 HIS A 428 2.12 REMARK 500 NE2 GLN A 366 O HOH A 601 2.15 REMARK 500 O2 EDO A 504 O HOH A 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO B 507 O1 EDO B 508 28512 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 376 CB CYS B 376 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 377 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 436 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 -159.81 -117.64 REMARK 500 LEU A 123 84.27 -153.07 REMARK 500 ASN A 151 106.91 -59.47 REMARK 500 ALA A 169 -76.52 -78.20 REMARK 500 SER A 239 -174.69 -68.13 REMARK 500 LYS A 407 -169.19 -72.39 REMARK 500 ARG A 447 65.05 -119.37 REMARK 500 ASP B 56 -161.07 -112.42 REMARK 500 ALA B 169 -79.64 -78.85 REMARK 500 ALA B 173 141.65 -176.57 REMARK 500 ASP B 210 -167.59 -126.48 REMARK 500 TYR B 284 -53.19 -120.60 REMARK 500 LEU B 286 37.05 -81.85 REMARK 500 ARG B 447 57.24 -115.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 240 VAL B 241 -147.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H7Q RELATED DB: PDB DBREF 5H7N A 1 478 PDB 5H7N 5H7N 1 478 DBREF 5H7N B 1 478 PDB 5H7N 5H7N 1 478 SEQRES 1 A 478 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 478 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 478 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 478 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 478 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 478 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 478 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 478 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 478 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 478 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 478 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 478 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 478 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 478 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 478 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 478 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 478 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 478 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 478 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 478 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 478 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 478 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 478 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 478 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 478 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 478 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 478 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 478 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 478 ALA GLN THR ASN ALA ALA ARG ALA ALA ALA LEU CYS ARG SEQRES 30 A 478 LEU SER THR TYR LEU GLU GLU LEU GLU ALA VAL GLU LEU SEQRES 31 A 478 LYS LYS PHE LYS LEU TYR LEU GLY THR ALA THR GLU LEU SEQRES 32 A 478 GLY GLU GLY LYS ILE PRO TRP GLY SER MET GLU LYS ALA SEQRES 33 A 478 GLY PRO LEU GLU MET ALA GLN LEU LEU ILE THR HIS PHE SEQRES 34 A 478 GLY PRO GLU GLU ALA TRP ARG LEU ALA LEU SER THR PHE SEQRES 35 A 478 GLU ARG ILE ASN ARG LYS ASP LEU TRP GLU ARG GLY GLN SEQRES 36 A 478 ARG GLU ASP LEU VAL ARG ASP THR PRO PRO GLY GLY PRO SEQRES 37 A 478 SER SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 478 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 B 478 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 B 478 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 B 478 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 B 478 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 B 478 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 B 478 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 B 478 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 B 478 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 B 478 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 B 478 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 B 478 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 B 478 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 B 478 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 B 478 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 B 478 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 B 478 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 B 478 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 B 478 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 B 478 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 B 478 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 B 478 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 B 478 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 B 478 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 B 478 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 B 478 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 B 478 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 B 478 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 B 478 ALA GLN THR ASN ALA ALA ARG ALA ALA ALA LEU CYS ARG SEQRES 30 B 478 LEU SER THR TYR LEU GLU GLU LEU GLU ALA VAL GLU LEU SEQRES 31 B 478 LYS LYS PHE LYS LEU TYR LEU GLY THR ALA THR GLU LEU SEQRES 32 B 478 GLY GLU GLY LYS ILE PRO TRP GLY SER MET GLU LYS ALA SEQRES 33 B 478 GLY PRO LEU GLU MET ALA GLN LEU LEU ILE THR HIS PHE SEQRES 34 B 478 GLY PRO GLU GLU ALA TRP ARG LEU ALA LEU SER THR PHE SEQRES 35 B 478 GLU ARG ILE ASN ARG LYS ASP LEU TRP GLU ARG GLY GLN SEQRES 36 B 478 ARG GLU ASP LEU VAL ARG ASP THR PRO PRO GLY GLY PRO SEQRES 37 B 478 SER SER LEU GLU HIS HIS HIS HIS HIS HIS HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC C 4 11 HET GLC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET SO4 A 502 5 HET SO4 A 503 5 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET SO4 B 502 5 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET PEG B 506 7 HET EDO B 507 4 HET EDO B 508 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLC 8(C6 H12 O6) FORMUL 5 SO4 3(O4 S 2-) FORMUL 7 EDO 9(C2 H6 O2) FORMUL 15 PEG C4 H10 O3 FORMUL 18 HOH *398(H2 O) HELIX 1 AA1 GLY A 17 GLY A 33 1 17 HELIX 2 AA2 LYS A 43 ALA A 53 1 11 HELIX 3 AA3 ARG A 67 SER A 74 1 8 HELIX 4 AA4 ALA A 83 ASP A 88 1 6 HELIX 5 AA5 TYR A 91 VAL A 98 1 8 HELIX 6 AA6 GLU A 132 LYS A 143 1 12 HELIX 7 AA7 GLU A 154 ASP A 165 1 12 HELIX 8 AA8 ASN A 186 ASN A 202 1 17 HELIX 9 AA9 ASP A 210 LYS A 220 1 11 HELIX 10 AB1 GLY A 229 TRP A 231 5 3 HELIX 11 AB2 ALA A 232 SER A 239 1 8 HELIX 12 AB3 ASN A 273 TYR A 284 1 12 HELIX 13 AB4 THR A 287 LYS A 298 1 12 HELIX 14 AB5 LEU A 305 ALA A 313 1 9 HELIX 15 AB6 ASP A 315 GLY A 328 1 14 HELIX 16 AB7 GLN A 336 SER A 353 1 18 HELIX 17 AB8 THR A 357 GLU A 384 1 28 HELIX 18 AB9 GLU A 386 GLY A 398 1 13 HELIX 19 AC1 PRO A 409 LYS A 415 1 7 HELIX 20 AC2 GLY A 417 GLY A 430 1 14 HELIX 21 AC3 GLY A 430 ILE A 445 1 16 HELIX 22 AC4 ARG A 447 ASP A 458 1 12 HELIX 23 AC5 GLY B 17 GLY B 33 1 17 HELIX 24 AC6 LYS B 43 THR B 54 1 12 HELIX 25 AC7 ARG B 67 SER B 74 1 8 HELIX 26 AC8 ALA B 83 LYS B 89 1 7 HELIX 27 AC9 TYR B 91 VAL B 98 1 8 HELIX 28 AD1 GLU B 132 ALA B 142 1 11 HELIX 29 AD2 GLU B 154 ASP B 165 1 12 HELIX 30 AD3 ASN B 186 ASN B 202 1 17 HELIX 31 AD4 ASP B 210 LYS B 220 1 11 HELIX 32 AD5 GLY B 229 TRP B 231 5 3 HELIX 33 AD6 ALA B 232 SER B 239 1 8 HELIX 34 AD7 ASN B 273 TYR B 284 1 12 HELIX 35 AD8 THR B 287 LYS B 298 1 12 HELIX 36 AD9 LEU B 305 ALA B 313 1 9 HELIX 37 AE1 ASP B 315 GLY B 328 1 14 HELIX 38 AE2 GLN B 336 SER B 353 1 18 HELIX 39 AE3 THR B 357 GLU B 384 1 28 HELIX 40 AE4 GLU B 386 GLY B 398 1 13 HELIX 41 AE5 PRO B 409 LYS B 415 1 7 HELIX 42 AE6 GLY B 417 GLY B 430 1 14 HELIX 43 AE7 GLY B 430 ILE B 445 1 16 HELIX 44 AE8 ARG B 447 LEU B 459 1 13 SHEET 1 AA1 6 LYS A 35 GLU A 39 0 SHEET 2 AA1 6 LYS A 7 TRP A 11 1 N ILE A 10 O THR A 37 SHEET 3 AA1 6 ILE A 60 ALA A 64 1 O ILE A 60 N TRP A 11 SHEET 4 AA1 6 PHE A 259 ILE A 267 -1 O GLY A 266 N ILE A 61 SHEET 5 AA1 6 TYR A 107 GLU A 112 -1 N GLU A 112 O GLY A 261 SHEET 6 AA1 6 ALA A 302 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 AA2 5 LYS A 35 GLU A 39 0 SHEET 2 AA2 5 LYS A 7 TRP A 11 1 N ILE A 10 O THR A 37 SHEET 3 AA2 5 ILE A 60 ALA A 64 1 O ILE A 60 N TRP A 11 SHEET 4 AA2 5 PHE A 259 ILE A 267 -1 O GLY A 266 N ILE A 61 SHEET 5 AA2 5 GLU A 329 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 AA3 2 ARG A 99 TYR A 100 0 SHEET 2 AA3 2 LYS A 103 LEU A 104 -1 O LYS A 103 N TYR A 100 SHEET 1 AA4 4 SER A 146 LEU A 148 0 SHEET 2 AA4 4 THR A 223 ASN A 228 1 O ALA A 224 N SER A 146 SHEET 3 AA4 4 SER A 115 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 4 AA4 4 TYR A 243 THR A 246 -1 O THR A 246 N LEU A 116 SHEET 1 AA5 2 TYR A 168 ALA A 173 0 SHEET 2 AA5 2 LYS A 176 GLY A 183 -1 O ASP A 178 N LYS A 171 SHEET 1 AA6 6 LYS B 35 GLU B 39 0 SHEET 2 AA6 6 LYS B 7 TRP B 11 1 N ILE B 10 O GLU B 39 SHEET 3 AA6 6 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA6 6 PHE B 259 ILE B 267 -1 O SER B 264 N TRP B 63 SHEET 5 AA6 6 TYR B 107 GLU B 112 -1 N TYR B 107 O ALA B 265 SHEET 6 AA6 6 ALA B 302 VAL B 303 -1 O ALA B 302 N VAL B 111 SHEET 1 AA7 5 LYS B 35 GLU B 39 0 SHEET 2 AA7 5 LYS B 7 TRP B 11 1 N ILE B 10 O GLU B 39 SHEET 3 AA7 5 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA7 5 PHE B 259 ILE B 267 -1 O SER B 264 N TRP B 63 SHEET 5 AA7 5 GLU B 329 ILE B 330 1 O GLU B 329 N VAL B 260 SHEET 1 AA8 2 ARG B 99 TYR B 100 0 SHEET 2 AA8 2 LYS B 103 LEU B 104 -1 O LYS B 103 N TYR B 100 SHEET 1 AA9 4 SER B 146 LEU B 148 0 SHEET 2 AA9 4 THR B 223 ASN B 228 1 O ALA B 224 N SER B 146 SHEET 3 AA9 4 SER B 115 ASN B 119 -1 N ASN B 119 O ALA B 224 SHEET 4 AA9 4 TYR B 243 THR B 246 -1 O THR B 246 N LEU B 116 SHEET 1 AB1 2 TYR B 168 ALA B 173 0 SHEET 2 AB1 2 LYS B 176 GLY B 183 -1 O ASP B 178 N LYS B 171 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.41 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.38 LINK O4 GLC C 3 C1 GLC C 4 1555 1555 1.41 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.41 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.39 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.40 CRYST1 42.540 104.550 110.940 90.00 98.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023507 0.000000 0.003704 0.00000 SCALE2 0.000000 0.009565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009125 0.00000