data_5H7U # _entry.id 5H7U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5H7U WWPDB D_1300002065 BMRB 36034 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 36034 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5H7U _pdbx_database_status.recvd_initial_deposition_date 2016-11-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagata, T.' 1 'Obayashi, E.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 2651 _citation.page_last 2663 _citation.title 'Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2017.02.052 _citation.pdbx_database_id_PubMed 28297669 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Obayashi, E.' 1 primary 'Luna, R.E.' 2 primary 'Nagata, T.' 3 primary 'Martin-Marcos, P.' 4 primary 'Hiraishi, H.' 5 primary 'Singh, C.R.' 6 primary 'Erzberger, J.P.' 7 primary 'Zhang, F.' 8 primary 'Arthanari, H.' 9 primary 'Morris, J.' 10 primary 'Pellarin, R.' 11 primary 'Moore, C.' 12 primary 'Harmon, I.' 13 primary 'Papadopoulos, E.' 14 primary 'Yoshida, H.' 15 primary 'Nasr, M.L.' 16 primary 'Unzai, S.' 17 primary 'Thompson, B.' 18 primary 'Aube, E.' 19 primary 'Hustak, S.' 20 primary 'Stengel, F.' 21 primary 'Dagraca, E.' 22 primary 'Ananbandam, A.' 23 primary 'Gao, P.' 24 primary 'Urano, T.' 25 primary 'Hinnebusch, A.G.' 26 primary 'Wagner, G.' 27 primary 'Asano, K.' 28 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Eukaryotic translation initiation factor 3 subunit C' _entity.formula_weight 14598.317 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP RESIDUES 36-163' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;eIF3c,Eukaryotic translation initiation factor 3 93 kDa subunit,eIF3 p93,Nuclear transport protein NIP1,Translation initiation factor eIF3,p93 subunit ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SESELDQESDDSFFNESESESEADVDSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSA KEKLLDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWGT ; _entity_poly.pdbx_seq_one_letter_code_can ;SESELDQESDDSFFNESESESEADVDSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSA KEKLLDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWGT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 SER n 1 4 GLU n 1 5 LEU n 1 6 ASP n 1 7 GLN n 1 8 GLU n 1 9 SER n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 PHE n 1 14 PHE n 1 15 ASN n 1 16 GLU n 1 17 SER n 1 18 GLU n 1 19 SER n 1 20 GLU n 1 21 SER n 1 22 GLU n 1 23 ALA n 1 24 ASP n 1 25 VAL n 1 26 ASP n 1 27 SER n 1 28 ASP n 1 29 ASP n 1 30 SER n 1 31 ASP n 1 32 ALA n 1 33 LYS n 1 34 PRO n 1 35 TYR n 1 36 GLY n 1 37 PRO n 1 38 ASP n 1 39 TRP n 1 40 PHE n 1 41 LYS n 1 42 LYS n 1 43 SER n 1 44 GLU n 1 45 PHE n 1 46 ARG n 1 47 LYS n 1 48 GLN n 1 49 GLY n 1 50 GLY n 1 51 GLY n 1 52 SER n 1 53 ASN n 1 54 LYS n 1 55 PHE n 1 56 LEU n 1 57 LYS n 1 58 SER n 1 59 SER n 1 60 ASN n 1 61 TYR n 1 62 ASP n 1 63 SER n 1 64 SER n 1 65 ASP n 1 66 GLU n 1 67 GLU n 1 68 SER n 1 69 ASP n 1 70 GLU n 1 71 GLU n 1 72 ASP n 1 73 GLY n 1 74 LYS n 1 75 LYS n 1 76 VAL n 1 77 VAL n 1 78 LYS n 1 79 SER n 1 80 ALA n 1 81 LYS n 1 82 GLU n 1 83 LYS n 1 84 LEU n 1 85 LEU n 1 86 ASP n 1 87 GLU n 1 88 MET n 1 89 GLN n 1 90 ASP n 1 91 VAL n 1 92 TYR n 1 93 ASN n 1 94 LYS n 1 95 ILE n 1 96 SER n 1 97 GLN n 1 98 ALA n 1 99 GLU n 1 100 ASN n 1 101 SER n 1 102 ASP n 1 103 ASP n 1 104 TRP n 1 105 LEU n 1 106 THR n 1 107 ILE n 1 108 SER n 1 109 ASN n 1 110 GLU n 1 111 PHE n 1 112 ASP n 1 113 LEU n 1 114 ILE n 1 115 SER n 1 116 ARG n 1 117 LEU n 1 118 LEU n 1 119 VAL n 1 120 ARG n 1 121 ALA n 1 122 GLN n 1 123 GLN n 1 124 GLN n 1 125 ASN n 1 126 TRP n 1 127 GLY n 1 128 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NIP1, YMR309C, YM9924.01C, YM9952.11C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EIF3C_YEAST _struct_ref.pdbx_db_accession P32497 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SESELDQESDDSFFNESESESEADVDSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSA KEKLLDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWGT ; _struct_ref.pdbx_align_begin 36 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5H7U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32497 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D HNCO' 2 isotropic 3 1 1 '3D HN(CA)CO' 2 isotropic 4 1 1 '3D CBCA(CO)NH' 2 isotropic 5 1 1 '3D HNCACB' 2 isotropic 6 1 1 '3D C(CO)NH' 2 isotropic 7 1 1 '3D HBHA(CO)NH' 2 isotropic 8 1 1 '2D 1H-13C HSQC' 1 isotropic 9 1 1 '3D HCCH-TOCSY' 2 isotropic 10 1 1 '3D HCCH-COSY' 2 isotropic 11 1 1 '3D 1H-15N NOESY' 1 isotropic 12 1 1 '3D 1H-13C NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 170 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.4 mM [U-100% 13C; U-100% 15N] eIF3c 36-163, 20 mM sodium phosphate, 150 mM sodium chloride, 1 mM DTT, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 15N_13C_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 Avance ? Bruker 800 ? 2 Avance ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 5H7U _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5H7U _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5H7U _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement AMBER 9 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' Kujira 0.98 'Naohiro Kobayashi' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 5 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5H7U _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5H7U _struct.title 'NMR structure of eIF3 36-163' _struct.pdbx_descriptor 'Eukaryotic translation initiation factor 3 subunit C' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5H7U _struct_keywords.text 'translation, initiation factor, eukaryotic initiation factor' _struct_keywords.pdbx_keywords TRANSLATION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 79 ? LEU A 84 ? SER A 114 LEU A 119 5 ? 6 HELX_P HELX_P2 AA2 ASP A 103 ? SER A 115 ? ASP A 138 SER A 150 1 ? 13 HELX_P HELX_P3 AA3 SER A 115 ? GLN A 124 ? SER A 150 GLN A 159 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 5H7U _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 36 36 SER SER A . n A 1 2 GLU 2 37 37 GLU GLU A . n A 1 3 SER 3 38 38 SER SER A . n A 1 4 GLU 4 39 39 GLU GLU A . n A 1 5 LEU 5 40 40 LEU LEU A . n A 1 6 ASP 6 41 41 ASP ASP A . n A 1 7 GLN 7 42 42 GLN GLN A . n A 1 8 GLU 8 43 43 GLU GLU A . n A 1 9 SER 9 44 44 SER SER A . n A 1 10 ASP 10 45 45 ASP ASP A . n A 1 11 ASP 11 46 46 ASP ASP A . n A 1 12 SER 12 47 47 SER SER A . n A 1 13 PHE 13 48 48 PHE PHE A . n A 1 14 PHE 14 49 49 PHE PHE A . n A 1 15 ASN 15 50 50 ASN ASN A . n A 1 16 GLU 16 51 51 GLU GLU A . n A 1 17 SER 17 52 52 SER SER A . n A 1 18 GLU 18 53 53 GLU GLU A . n A 1 19 SER 19 54 54 SER SER A . n A 1 20 GLU 20 55 55 GLU GLU A . n A 1 21 SER 21 56 56 SER SER A . n A 1 22 GLU 22 57 57 GLU GLU A . n A 1 23 ALA 23 58 58 ALA ALA A . n A 1 24 ASP 24 59 59 ASP ASP A . n A 1 25 VAL 25 60 60 VAL VAL A . n A 1 26 ASP 26 61 61 ASP ASP A . n A 1 27 SER 27 62 62 SER SER A . n A 1 28 ASP 28 63 63 ASP ASP A . n A 1 29 ASP 29 64 64 ASP ASP A . n A 1 30 SER 30 65 65 SER SER A . n A 1 31 ASP 31 66 66 ASP ASP A . n A 1 32 ALA 32 67 67 ALA ALA A . n A 1 33 LYS 33 68 68 LYS LYS A . n A 1 34 PRO 34 69 69 PRO PRO A . n A 1 35 TYR 35 70 70 TYR TYR A . n A 1 36 GLY 36 71 71 GLY GLY A . n A 1 37 PRO 37 72 72 PRO PRO A . n A 1 38 ASP 38 73 73 ASP ASP A . n A 1 39 TRP 39 74 74 TRP TRP A . n A 1 40 PHE 40 75 75 PHE PHE A . n A 1 41 LYS 41 76 76 LYS LYS A . n A 1 42 LYS 42 77 77 LYS LYS A . n A 1 43 SER 43 78 78 SER SER A . n A 1 44 GLU 44 79 79 GLU GLU A . n A 1 45 PHE 45 80 80 PHE PHE A . n A 1 46 ARG 46 81 81 ARG ARG A . n A 1 47 LYS 47 82 82 LYS LYS A . n A 1 48 GLN 48 83 83 GLN GLN A . n A 1 49 GLY 49 84 84 GLY GLY A . n A 1 50 GLY 50 85 85 GLY GLY A . n A 1 51 GLY 51 86 86 GLY GLY A . n A 1 52 SER 52 87 87 SER SER A . n A 1 53 ASN 53 88 88 ASN ASN A . n A 1 54 LYS 54 89 89 LYS LYS A . n A 1 55 PHE 55 90 90 PHE PHE A . n A 1 56 LEU 56 91 91 LEU LEU A . n A 1 57 LYS 57 92 92 LYS LYS A . n A 1 58 SER 58 93 93 SER SER A . n A 1 59 SER 59 94 94 SER SER A . n A 1 60 ASN 60 95 95 ASN ASN A . n A 1 61 TYR 61 96 96 TYR TYR A . n A 1 62 ASP 62 97 97 ASP ASP A . n A 1 63 SER 63 98 98 SER SER A . n A 1 64 SER 64 99 99 SER SER A . n A 1 65 ASP 65 100 100 ASP ASP A . n A 1 66 GLU 66 101 101 GLU GLU A . n A 1 67 GLU 67 102 102 GLU GLU A . n A 1 68 SER 68 103 103 SER SER A . n A 1 69 ASP 69 104 104 ASP ASP A . n A 1 70 GLU 70 105 105 GLU GLU A . n A 1 71 GLU 71 106 106 GLU GLU A . n A 1 72 ASP 72 107 107 ASP ASP A . n A 1 73 GLY 73 108 108 GLY GLY A . n A 1 74 LYS 74 109 109 LYS LYS A . n A 1 75 LYS 75 110 110 LYS LYS A . n A 1 76 VAL 76 111 111 VAL VAL A . n A 1 77 VAL 77 112 112 VAL VAL A . n A 1 78 LYS 78 113 113 LYS LYS A . n A 1 79 SER 79 114 114 SER SER A . n A 1 80 ALA 80 115 115 ALA ALA A . n A 1 81 LYS 81 116 116 LYS LYS A . n A 1 82 GLU 82 117 117 GLU GLU A . n A 1 83 LYS 83 118 118 LYS LYS A . n A 1 84 LEU 84 119 119 LEU LEU A . n A 1 85 LEU 85 120 120 LEU LEU A . n A 1 86 ASP 86 121 121 ASP ASP A . n A 1 87 GLU 87 122 122 GLU GLU A . n A 1 88 MET 88 123 123 MET MET A . n A 1 89 GLN 89 124 124 GLN GLN A . n A 1 90 ASP 90 125 125 ASP ASP A . n A 1 91 VAL 91 126 126 VAL VAL A . n A 1 92 TYR 92 127 127 TYR TYR A . n A 1 93 ASN 93 128 128 ASN ASN A . n A 1 94 LYS 94 129 129 LYS LYS A . n A 1 95 ILE 95 130 130 ILE ILE A . n A 1 96 SER 96 131 131 SER SER A . n A 1 97 GLN 97 132 132 GLN GLN A . n A 1 98 ALA 98 133 133 ALA ALA A . n A 1 99 GLU 99 134 134 GLU GLU A . n A 1 100 ASN 100 135 135 ASN ASN A . n A 1 101 SER 101 136 136 SER SER A . n A 1 102 ASP 102 137 137 ASP ASP A . n A 1 103 ASP 103 138 138 ASP ASP A . n A 1 104 TRP 104 139 139 TRP TRP A . n A 1 105 LEU 105 140 140 LEU LEU A . n A 1 106 THR 106 141 141 THR THR A . n A 1 107 ILE 107 142 142 ILE ILE A . n A 1 108 SER 108 143 143 SER SER A . n A 1 109 ASN 109 144 144 ASN ASN A . n A 1 110 GLU 110 145 145 GLU GLU A . n A 1 111 PHE 111 146 146 PHE PHE A . n A 1 112 ASP 112 147 147 ASP ASP A . n A 1 113 LEU 113 148 148 LEU LEU A . n A 1 114 ILE 114 149 149 ILE ILE A . n A 1 115 SER 115 150 150 SER SER A . n A 1 116 ARG 116 151 151 ARG ARG A . n A 1 117 LEU 117 152 152 LEU LEU A . n A 1 118 LEU 118 153 153 LEU LEU A . n A 1 119 VAL 119 154 154 VAL VAL A . n A 1 120 ARG 120 155 155 ARG ARG A . n A 1 121 ALA 121 156 156 ALA ALA A . n A 1 122 GLN 122 157 157 GLN GLN A . n A 1 123 GLN 123 158 158 GLN GLN A . n A 1 124 GLN 124 159 159 GLN GLN A . n A 1 125 ASN 125 160 160 ASN ASN A . n A 1 126 TRP 126 161 161 TRP TRP A . n A 1 127 GLY 127 162 162 GLY GLY A . n A 1 128 THR 128 163 163 THR THR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-05-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'eIF3c 36-163' 0.4 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 150 ? mM 'natural abundance' 1 DTT 1 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 NE A ARG 81 ? ? CZ A ARG 81 ? ? NH1 A ARG 81 ? ? 123.52 120.30 3.22 0.50 N 2 14 NE A ARG 155 ? ? CZ A ARG 155 ? ? NH1 A ARG 155 ? ? 123.58 120.30 3.28 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 46 ? ? -151.52 -7.36 2 1 SER A 54 ? ? -157.08 -95.95 3 1 ASP A 97 ? ? -68.21 96.30 4 1 SER A 98 ? ? -172.24 -44.13 5 1 SER A 99 ? ? 69.65 -173.94 6 1 ASP A 100 ? ? -162.88 -44.00 7 1 ASP A 104 ? ? -154.29 19.89 8 1 LYS A 109 ? ? -152.63 -2.14 9 1 LYS A 110 ? ? 68.84 153.57 10 1 LYS A 113 ? ? 39.98 79.91 11 1 SER A 114 ? ? -161.92 -163.13 12 1 ASP A 121 ? ? 72.09 -0.29 13 1 ALA A 133 ? ? 59.53 3.55 14 1 SER A 136 ? ? 68.68 -15.80 15 1 ASP A 137 ? ? -141.52 -2.85 16 1 ASN A 160 ? ? -77.43 49.49 17 2 LEU A 40 ? ? -163.55 -40.22 18 2 ASP A 46 ? ? -151.41 31.18 19 2 GLU A 55 ? ? -82.95 46.56 20 2 ASP A 61 ? ? 74.43 129.65 21 2 SER A 65 ? ? -85.06 46.73 22 2 ALA A 67 ? ? -77.96 39.46 23 2 TYR A 70 ? ? -94.85 50.79 24 2 SER A 78 ? ? -170.67 -179.57 25 2 GLU A 105 ? ? -150.82 5.82 26 2 LYS A 109 ? ? -155.36 -21.87 27 2 LYS A 113 ? ? 61.47 63.02 28 2 SER A 114 ? ? -166.00 -167.27 29 2 ASP A 121 ? ? -165.24 -29.61 30 2 GLN A 124 ? ? -143.68 20.11 31 2 ASP A 125 ? ? -126.32 -79.87 32 2 ASP A 137 ? ? -151.07 -25.75 33 2 SER A 150 ? ? -162.26 118.89 34 2 ASN A 160 ? ? -74.41 31.71 35 3 GLN A 42 ? ? -156.26 1.37 36 3 SER A 44 ? ? -155.83 23.20 37 3 SER A 54 ? ? -170.05 -175.57 38 3 GLN A 83 ? ? -156.70 -58.72 39 3 PHE A 90 ? ? 65.57 -178.31 40 3 ASP A 107 ? ? -77.16 32.13 41 3 LYS A 109 ? ? -130.31 -34.91 42 3 LYS A 113 ? ? -60.52 93.60 43 3 SER A 114 ? ? -154.37 -118.30 44 3 ASP A 121 ? ? -159.71 -12.88 45 3 MET A 123 ? ? -170.31 -179.78 46 3 ALA A 133 ? ? 63.45 -2.18 47 4 ASP A 45 ? ? -152.67 24.42 48 4 GLU A 57 ? ? 82.75 147.44 49 4 SER A 65 ? ? 73.83 167.04 50 4 ASP A 107 ? ? -141.17 -73.04 51 4 SER A 114 ? ? -169.13 -143.54 52 4 GLN A 124 ? ? -140.25 23.90 53 4 ASP A 125 ? ? -132.42 -71.66 54 4 ASP A 137 ? ? 69.79 -29.02 55 5 SER A 56 ? ? -161.08 -166.75 56 5 GLU A 102 ? ? 73.20 30.79 57 5 ASP A 107 ? ? 77.11 -2.12 58 5 SER A 114 ? ? -145.29 -159.62 59 5 LEU A 120 ? ? -70.87 44.74 60 5 ASP A 121 ? ? -152.12 -3.33 61 5 ASP A 137 ? ? 71.61 -37.70 62 5 ASN A 160 ? ? -74.72 27.29 63 6 SER A 38 ? ? 69.64 -30.07 64 6 ASP A 45 ? ? -149.15 23.04 65 6 LEU A 91 ? ? -157.09 15.65 66 6 SER A 103 ? ? -164.89 -48.49 67 6 LYS A 113 ? ? -54.27 95.07 68 6 SER A 114 ? ? -160.37 -116.69 69 6 ASP A 137 ? ? 70.56 -23.14 70 7 PRO A 69 ? ? -64.08 12.99 71 7 TYR A 96 ? ? -155.35 -42.52 72 7 SER A 98 ? ? -153.03 5.70 73 7 SER A 114 ? ? 174.06 -99.10 74 7 ASP A 121 ? ? 80.66 3.26 75 7 ASP A 137 ? ? -157.10 -48.88 76 8 GLU A 43 ? ? -150.25 12.03 77 8 SER A 44 ? ? 67.49 176.97 78 8 ASP A 59 ? ? -73.99 36.52 79 8 VAL A 60 ? ? -170.15 137.15 80 8 LEU A 91 ? ? 61.90 63.32 81 8 SER A 94 ? ? -161.11 -35.88 82 8 GLU A 102 ? ? -152.89 63.60 83 9 SER A 78 ? ? -172.36 -178.54 84 9 PHE A 90 ? ? -153.21 85.01 85 9 LEU A 91 ? ? -171.42 102.76 86 9 SER A 114 ? ? 176.46 -157.71 87 9 LEU A 120 ? ? -67.69 23.73 88 9 ASP A 125 ? ? -122.07 -64.43 89 10 SER A 44 ? ? -156.18 18.44 90 10 SER A 78 ? ? -170.04 -43.86 91 10 LYS A 82 ? ? -144.68 14.82 92 10 LYS A 109 ? ? -158.06 11.35 93 10 SER A 114 ? ? -164.72 -149.63 94 10 ASP A 121 ? ? 77.20 -1.40 95 10 ALA A 133 ? ? 62.16 -6.93 96 10 ASP A 137 ? ? -156.48 -8.62 97 11 GLN A 42 ? ? -152.23 -1.30 98 11 GLU A 43 ? ? -164.72 108.03 99 11 SER A 44 ? ? -156.63 12.08 100 11 LYS A 82 ? ? 54.86 -144.66 101 11 GLN A 83 ? ? 66.99 -165.81 102 11 TYR A 96 ? ? 63.39 -170.75 103 11 SER A 103 ? ? -81.55 33.88 104 11 VAL A 112 ? ? -133.36 -51.69 105 11 ASP A 121 ? ? -164.86 -25.13 106 11 GLN A 132 ? ? -138.17 -47.95 107 11 ALA A 133 ? ? 62.23 -11.84 108 11 SER A 150 ? ? -160.67 117.53 109 12 SER A 38 ? ? -161.24 -8.42 110 12 ASP A 41 ? ? 69.72 -177.31 111 12 ASP A 46 ? ? -150.93 12.77 112 12 ASN A 50 ? ? -162.78 -24.16 113 12 ASP A 73 ? ? -162.22 -38.54 114 12 SER A 94 ? ? 66.12 179.73 115 12 LYS A 109 ? ? -161.44 117.11 116 12 VAL A 112 ? ? -139.70 -62.05 117 12 GLN A 124 ? ? -143.17 23.83 118 12 ASP A 125 ? ? -131.08 -77.33 119 12 GLN A 132 ? ? -124.64 -77.73 120 12 ASN A 135 ? ? -165.46 66.29 121 13 ASP A 41 ? ? 75.74 149.03 122 13 GLN A 42 ? ? 65.26 -61.56 123 13 GLU A 43 ? ? -140.22 -16.91 124 13 ASP A 46 ? ? -141.32 11.10 125 13 SER A 62 ? ? -168.62 -166.23 126 13 ALA A 67 ? ? -157.12 30.48 127 13 TRP A 74 ? ? 71.07 -24.71 128 13 PHE A 75 ? ? 67.43 161.88 129 13 LYS A 82 ? ? -65.69 92.80 130 13 ASN A 88 ? ? 76.14 134.45 131 13 LEU A 91 ? ? -166.33 104.16 132 13 TYR A 96 ? ? 67.71 -53.79 133 13 SER A 98 ? ? -150.43 11.30 134 13 GLU A 102 ? ? -140.36 -10.97 135 13 LYS A 110 ? ? -158.51 -157.57 136 13 VAL A 111 ? ? 76.89 140.37 137 13 SER A 114 ? ? -157.29 -149.09 138 13 LEU A 120 ? ? -72.12 43.93 139 13 ASP A 121 ? ? -155.13 -12.42 140 13 SER A 136 ? ? -144.53 37.05 141 13 ASP A 137 ? ? -150.88 -31.73 142 14 LEU A 40 ? ? -156.68 7.95 143 14 LYS A 77 ? ? -153.01 6.07 144 14 SER A 78 ? ? -173.76 -178.98 145 14 LEU A 91 ? ? -150.86 34.26 146 14 LYS A 109 ? ? -177.36 17.49 147 14 LYS A 113 ? ? -50.45 106.24 148 14 GLN A 132 ? ? -135.65 -72.91 149 15 GLU A 43 ? ? -78.83 38.98 150 15 TYR A 70 ? ? -171.07 -27.14 151 15 SER A 78 ? ? 70.59 -160.54 152 15 SER A 94 ? ? -152.78 10.38 153 15 ASP A 97 ? ? -158.25 -43.76 154 15 SER A 98 ? ? -167.12 -169.13 155 15 LYS A 113 ? ? -68.95 86.95 156 15 SER A 114 ? ? -155.56 -133.96 157 15 ASP A 121 ? ? 76.48 -1.51 158 15 SER A 150 ? ? -162.01 115.88 159 16 SER A 103 ? ? -157.68 -99.14 160 16 ASP A 104 ? ? 65.88 -56.68 161 16 LYS A 110 ? ? 65.84 130.93 162 16 SER A 114 ? ? -163.94 -166.77 163 16 ASP A 121 ? ? 79.36 -2.41 164 16 MET A 123 ? ? -159.25 77.96 165 16 ASN A 160 ? ? -75.29 29.26 166 17 GLU A 37 ? ? 68.78 172.13 167 17 GLU A 43 ? ? -77.34 44.83 168 17 ASP A 46 ? ? -151.47 1.61 169 17 GLU A 101 ? ? -81.13 42.13 170 17 SER A 103 ? ? -172.28 139.81 171 17 ASP A 121 ? ? -170.46 -24.22 172 17 ASP A 125 ? ? -122.02 -64.45 173 17 GLN A 132 ? ? -127.48 -53.30 174 17 ASP A 137 ? ? 61.79 -30.55 175 18 SER A 62 ? ? -163.86 -55.35 176 18 SER A 87 ? ? -159.50 -53.63 177 18 LEU A 91 ? ? -156.38 8.50 178 18 GLU A 101 ? ? -153.74 22.89 179 18 SER A 103 ? ? -163.83 -163.85 180 18 VAL A 112 ? ? -162.43 -37.58 181 18 SER A 114 ? ? -176.92 -157.60 182 18 LEU A 120 ? ? -71.48 34.31 183 18 ASP A 121 ? ? -155.37 1.17 184 18 GLN A 124 ? ? -140.45 23.24 185 18 ASP A 125 ? ? -131.91 -74.88 186 18 ALA A 133 ? ? 62.37 -2.62 187 18 GLU A 134 ? ? -101.73 50.29 188 18 SER A 136 ? ? 67.81 -10.98 189 18 ASP A 137 ? ? -159.22 -20.78 190 19 SER A 54 ? ? -150.03 -8.92 191 19 TYR A 70 ? ? -174.99 -22.62 192 19 SER A 78 ? ? 64.09 -155.58 193 19 LYS A 92 ? ? 74.22 146.61 194 19 LEU A 120 ? ? -72.58 33.91 195 19 ASP A 121 ? ? -148.28 -4.63 196 19 GLN A 132 ? ? -135.07 -38.53 197 19 ALA A 133 ? ? 60.00 11.96 198 19 ASN A 160 ? ? -77.93 36.25 199 20 PHE A 48 ? ? -150.88 16.94 200 20 GLU A 55 ? ? -153.84 51.09 201 20 ASP A 59 ? ? 73.15 58.95 202 20 ASP A 64 ? ? 48.05 -98.43 203 20 GLN A 83 ? ? -150.21 35.94 204 20 GLU A 105 ? ? 54.87 -109.49 205 20 LYS A 113 ? ? -45.49 105.54 206 20 SER A 114 ? ? -153.00 -118.13 207 20 ASP A 121 ? ? -171.98 -22.14 208 20 ASP A 125 ? ? -121.28 -64.13 209 20 GLN A 132 ? ? -129.86 -50.36 210 20 ASP A 137 ? ? 71.02 -43.22 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal KAKENHI Japan 15H01634 1 KAKENHI Japan 26440026 2 #