HEADER TRANSLATION 21-NOV-16 5H7U TITLE NMR STRUCTURE OF EIF3 36-163 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-163; COMPND 5 SYNONYM: EIF3C,EUKARYOTIC TRANSLATION INITIATION FACTOR 3 93 KDA COMPND 6 SUBUNIT,EIF3 P93,NUCLEAR TRANSPORT PROTEIN NIP1,TRANSLATION COMPND 7 INITIATION FACTOR EIF3,P93 SUBUNIT; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: NIP1, YMR309C, YM9924.01C, YM9952.11C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSLATION, INITIATION FACTOR, EUKARYOTIC INITIATION FACTOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,E.OBAYASHI REVDAT 2 01-MAY-24 5H7U 1 REMARK REVDAT 1 31-MAY-17 5H7U 0 JRNL AUTH E.OBAYASHI,R.E.LUNA,T.NAGATA,P.MARTIN-MARCOS,H.HIRAISHI, JRNL AUTH 2 C.R.SINGH,J.P.ERZBERGER,F.ZHANG,H.ARTHANARI,J.MORRIS, JRNL AUTH 3 R.PELLARIN,C.MOORE,I.HARMON,E.PAPADOPOULOS,H.YOSHIDA, JRNL AUTH 4 M.L.NASR,S.UNZAI,B.THOMPSON,E.AUBE,S.HUSTAK,F.STENGEL, JRNL AUTH 5 E.DAGRACA,A.ANANBANDAM,P.GAO,T.URANO,A.G.HINNEBUSCH, JRNL AUTH 6 G.WAGNER,K.ASANO JRNL TITL MOLECULAR LANDSCAPE OF THE RIBOSOME PRE-INITIATION COMPLEX JRNL TITL 2 DURING MRNA SCANNING: STRUCTURAL ROLE FOR EIF3C AND ITS JRNL TITL 3 CONTROL BY EIF5. JRNL REF CELL REP V. 18 2651 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28297669 JRNL DOI 10.1016/J.CELREP.2017.02.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 170 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 EIF3C 36-163, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D HBHA(CO) REMARK 210 NH; 2D 1H-13C HSQC; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, KUJIRA 0.98, NMRVIEW, REMARK 210 NMRPIPE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 46 -7.36 -151.52 REMARK 500 1 SER A 54 -95.95 -157.08 REMARK 500 1 ASP A 97 96.30 -68.21 REMARK 500 1 SER A 98 -44.13 -172.24 REMARK 500 1 SER A 99 -173.94 69.65 REMARK 500 1 ASP A 100 -44.00 -162.88 REMARK 500 1 ASP A 104 19.89 -154.29 REMARK 500 1 LYS A 109 -2.14 -152.63 REMARK 500 1 LYS A 110 153.57 68.84 REMARK 500 1 LYS A 113 79.91 39.98 REMARK 500 1 SER A 114 -163.13 -161.92 REMARK 500 1 ASP A 121 -0.29 72.09 REMARK 500 1 ALA A 133 3.55 59.53 REMARK 500 1 SER A 136 -15.80 68.68 REMARK 500 1 ASP A 137 -2.85 -141.52 REMARK 500 1 ASN A 160 49.49 -77.43 REMARK 500 2 LEU A 40 -40.22 -163.55 REMARK 500 2 ASP A 46 31.18 -151.41 REMARK 500 2 GLU A 55 46.56 -82.95 REMARK 500 2 ASP A 61 129.65 74.43 REMARK 500 2 SER A 65 46.73 -85.06 REMARK 500 2 ALA A 67 39.46 -77.96 REMARK 500 2 TYR A 70 50.79 -94.85 REMARK 500 2 SER A 78 -179.57 -170.67 REMARK 500 2 GLU A 105 5.82 -150.82 REMARK 500 2 LYS A 109 -21.87 -155.36 REMARK 500 2 LYS A 113 63.02 61.47 REMARK 500 2 SER A 114 -167.27 -166.00 REMARK 500 2 ASP A 121 -29.61 -165.24 REMARK 500 2 GLN A 124 20.11 -143.68 REMARK 500 2 ASP A 125 -79.87 -126.32 REMARK 500 2 ASP A 137 -25.75 -151.07 REMARK 500 2 SER A 150 118.89 -162.26 REMARK 500 2 ASN A 160 31.71 -74.41 REMARK 500 3 GLN A 42 1.37 -156.26 REMARK 500 3 SER A 44 23.20 -155.83 REMARK 500 3 SER A 54 -175.57 -170.05 REMARK 500 3 GLN A 83 -58.72 -156.70 REMARK 500 3 PHE A 90 -178.31 65.57 REMARK 500 3 ASP A 107 32.13 -77.16 REMARK 500 3 LYS A 109 -34.91 -130.31 REMARK 500 3 LYS A 113 93.60 -60.52 REMARK 500 3 SER A 114 -118.30 -154.37 REMARK 500 3 ASP A 121 -12.88 -159.71 REMARK 500 3 MET A 123 -179.78 -170.31 REMARK 500 3 ALA A 133 -2.18 63.45 REMARK 500 4 ASP A 45 24.42 -152.67 REMARK 500 4 GLU A 57 147.44 82.75 REMARK 500 4 SER A 65 167.04 73.83 REMARK 500 4 ASP A 107 -73.04 -141.17 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36034 RELATED DB: BMRB DBREF 5H7U A 36 163 UNP P32497 EIF3C_YEAST 36 163 SEQRES 1 A 128 SER GLU SER GLU LEU ASP GLN GLU SER ASP ASP SER PHE SEQRES 2 A 128 PHE ASN GLU SER GLU SER GLU SER GLU ALA ASP VAL ASP SEQRES 3 A 128 SER ASP ASP SER ASP ALA LYS PRO TYR GLY PRO ASP TRP SEQRES 4 A 128 PHE LYS LYS SER GLU PHE ARG LYS GLN GLY GLY GLY SER SEQRES 5 A 128 ASN LYS PHE LEU LYS SER SER ASN TYR ASP SER SER ASP SEQRES 6 A 128 GLU GLU SER ASP GLU GLU ASP GLY LYS LYS VAL VAL LYS SEQRES 7 A 128 SER ALA LYS GLU LYS LEU LEU ASP GLU MET GLN ASP VAL SEQRES 8 A 128 TYR ASN LYS ILE SER GLN ALA GLU ASN SER ASP ASP TRP SEQRES 9 A 128 LEU THR ILE SER ASN GLU PHE ASP LEU ILE SER ARG LEU SEQRES 10 A 128 LEU VAL ARG ALA GLN GLN GLN ASN TRP GLY THR HELIX 1 AA1 SER A 114 LEU A 119 5 6 HELIX 2 AA2 ASP A 138 SER A 150 1 13 HELIX 3 AA3 SER A 150 GLN A 159 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1