data_5H8D # _entry.id 5H8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5H8D WWPDB D_1000216658 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5H8O _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5H8D _pdbx_database_status.recvd_initial_deposition_date 2015-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, A.' 1 'Schmidt, F.I.' 2 'Ruan, J.' 3 'Tang, C.' 4 'Wu, H.' 5 'Ploegh, H.L.' 6 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Exp.Med. _citation.journal_id_ASTM JEMEAV _citation.journal_id_CSD 0774 _citation.journal_id_ISSN 1540-9538 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 213 _citation.language ? _citation.page_first 771 _citation.page_last 790 _citation.title 'A single domain antibody fragment that recognizes the adaptor ASC defines the role of ASC domains in inflammasome assembly.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1084/jem.20151790 _citation.pdbx_database_id_PubMed 27069117 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schmidt, F.I.' 1 primary 'Lu, A.' 2 primary 'Chen, J.W.' 3 primary 'Ruan, J.' 4 primary 'Tang, C.' 5 primary 'Wu, H.' 6 primary 'Ploegh, H.L.' 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5H8D _cell.details ? _cell.formula_units_Z ? _cell.length_a 97.421 _cell.length_a_esd ? _cell.length_b 97.421 _cell.length_b_esd ? _cell.length_c 31.881 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5H8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VHH nanobody' 12253.590 1 ? ? ? ? 2 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QVQLQESGGGLVQPGGSLKLSCAASGFTFSRYAMSWYRQAPGKERESVARISSGGGTIYYADSVKGRFTISREDAKNTVY LQMNSLKPEDTAVYYCYVGGFWGQGTQVTVSSGG ; _entity_poly.pdbx_seq_one_letter_code_can ;QVQLQESGGGLVQPGGSLKLSCAASGFTFSRYAMSWYRQAPGKERESVARISSGGGTIYYADSVKGRFTISREDAKNTVY LQMNSLKPEDTAVYYCYVGGFWGQGTQVTVSSGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 GLN n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 LYS n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 PHE n 1 30 SER n 1 31 ARG n 1 32 TYR n 1 33 ALA n 1 34 MET n 1 35 SER n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLU n 1 45 ARG n 1 46 GLU n 1 47 SER n 1 48 VAL n 1 49 ALA n 1 50 ARG n 1 51 ILE n 1 52 SER n 1 53 SER n 1 54 GLY n 1 55 GLY n 1 56 GLY n 1 57 THR n 1 58 ILE n 1 59 TYR n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 SER n 1 64 VAL n 1 65 LYS n 1 66 GLY n 1 67 ARG n 1 68 PHE n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 ARG n 1 73 GLU n 1 74 ASP n 1 75 ALA n 1 76 LYS n 1 77 ASN n 1 78 THR n 1 79 VAL n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 MET n 1 84 ASN n 1 85 SER n 1 86 LEU n 1 87 LYS n 1 88 PRO n 1 89 GLU n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 TYR n 1 98 VAL n 1 99 GLY n 1 100 GLY n 1 101 PHE n 1 102 TRP n 1 103 GLY n 1 104 GLN n 1 105 GLY n 1 106 THR n 1 107 GLN n 1 108 VAL n 1 109 THR n 1 110 VAL n 1 111 SER n 1 112 SER n 1 113 GLY n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 114 _entity_src_gen.gene_src_common_name llama _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5H8D _struct_ref.pdbx_db_accession 5H8D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5H8D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5H8D _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 116 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 116 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5H8D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M citric acid at pH 3.5 and 35% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97950 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5H8D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.89 _reflns.d_resolution_low 68.89 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12777 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.77 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 94.790 _refine.B_iso_mean 28.1668 _refine.B_iso_min 11.460 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5H8D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.89 _refine.ls_d_res_low 68.89 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12735 _refine.ls_number_reflns_R_free 1274 _refine.ls_number_reflns_R_work 11461 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.1800 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1721 _refine.ls_R_factor_R_free 0.2030 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1687 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.460 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.9000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.89 _refine_hist.d_res_low 68.89 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 988 _refine_hist.pdbx_number_residues_total 114 _refine_hist.pdbx_B_iso_mean_solvent 37.42 _refine_hist.pdbx_number_atoms_protein 861 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 880 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.967 ? 1185 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 122 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 154 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.821 ? 313 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.89 1.9651 1306 . 130 1176 94.0000 . . . 0.2056 . 0.1682 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.9651 2.0546 1372 . 138 1234 99.0000 . . . 0.1963 . 0.1628 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.0546 2.1629 1405 . 140 1265 100.0000 . . . 0.2387 . 0.1698 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.1629 2.2984 1401 . 140 1261 100.0000 . . . 0.2134 . 0.1654 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.2984 2.4759 1407 . 141 1266 100.0000 . . . 0.2135 . 0.1829 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.4759 2.7250 1402 . 140 1262 100.0000 . . . 0.2564 . 0.1846 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.7250 3.1194 1433 . 144 1289 100.0000 . . . 0.2463 . 0.1931 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.1194 3.9300 1459 . 146 1313 100.0000 . . . 0.1765 . 0.1672 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.9300 68.9328 1550 . 155 1395 100.0000 . . . 0.1688 . 0.1490 . . . . . . 9 . . . # _struct.entry_id 5H8D _struct.title 'Crystal structure of an ASC binding nanobody' _struct.pdbx_descriptor 'VHH nanobody' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5H8D _struct_keywords.text 'VHH nanobody, ASC-binding, antibody fragment, inflammasome, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 28 ? TYR A 32 ? THR A 30 TYR A 34 5 ? 5 HELX_P HELX_P2 AA2 ASP A 62 ? LYS A 65 ? ASP A 64 LYS A 67 5 ? 4 HELX_P HELX_P3 AA3 ASP A 74 ? LYS A 76 ? ASP A 76 LYS A 78 5 ? 3 HELX_P HELX_P4 AA4 LYS A 87 ? THR A 91 ? LYS A 89 THR A 93 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 24 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 98 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.053 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? SER A 7 ? GLN A 5 SER A 9 AA1 2 LEU A 18 ? SER A 25 ? LEU A 20 SER A 27 AA1 3 THR A 78 ? MET A 83 ? THR A 80 MET A 85 AA1 4 PHE A 68 ? GLU A 73 ? PHE A 70 GLU A 75 AA2 1 GLY A 10 ? VAL A 12 ? GLY A 12 VAL A 14 AA2 2 THR A 106 ? VAL A 110 ? THR A 108 VAL A 112 AA2 3 ALA A 92 ? VAL A 98 ? ALA A 94 VAL A 100 AA2 4 MET A 34 ? GLN A 39 ? MET A 36 GLN A 41 AA2 5 GLU A 46 ? ILE A 51 ? GLU A 48 ILE A 53 AA2 6 ILE A 58 ? TYR A 60 ? ILE A 60 TYR A 62 AA3 1 GLY A 10 ? VAL A 12 ? GLY A 12 VAL A 14 AA3 2 THR A 106 ? VAL A 110 ? THR A 108 VAL A 112 AA3 3 ALA A 92 ? VAL A 98 ? ALA A 94 VAL A 100 AA3 4 PHE A 101 ? TRP A 102 ? PHE A 103 TRP A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 5 ? N GLN A 7 O ALA A 23 ? O ALA A 25 AA1 2 3 N LEU A 18 ? N LEU A 20 O MET A 83 ? O MET A 85 AA1 3 4 O TYR A 80 ? O TYR A 82 N SER A 71 ? N SER A 73 AA2 1 2 N GLY A 10 ? N GLY A 12 O THR A 109 ? O THR A 111 AA2 2 3 O THR A 106 ? O THR A 108 N TYR A 94 ? N TYR A 96 AA2 3 4 O TYR A 95 ? O TYR A 97 N TYR A 37 ? N TYR A 39 AA2 4 5 N ARG A 38 ? N ARG A 40 O GLU A 46 ? O GLU A 48 AA2 5 6 N ARG A 50 ? N ARG A 52 O TYR A 59 ? O TYR A 61 AA3 1 2 N GLY A 10 ? N GLY A 12 O THR A 109 ? O THR A 111 AA3 2 3 O THR A 106 ? O THR A 108 N TYR A 94 ? N TYR A 96 AA3 3 4 N VAL A 98 ? N VAL A 100 O PHE A 101 ? O PHE A 103 # _atom_sites.entry_id 5H8D _atom_sites.fract_transf_matrix[1][1] 0.010265 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010265 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031367 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 3 3 GLN GLN A . n A 1 2 VAL 2 4 4 VAL VAL A . n A 1 3 GLN 3 5 5 GLN GLN A . n A 1 4 LEU 4 6 6 LEU LEU A . n A 1 5 GLN 5 7 7 GLN GLN A . n A 1 6 GLU 6 8 8 GLU GLU A . n A 1 7 SER 7 9 9 SER SER A . n A 1 8 GLY 8 10 10 GLY GLY A . n A 1 9 GLY 9 11 11 GLY GLY A . n A 1 10 GLY 10 12 12 GLY GLY A . n A 1 11 LEU 11 13 13 LEU LEU A . n A 1 12 VAL 12 14 14 VAL VAL A . n A 1 13 GLN 13 15 15 GLN GLN A . n A 1 14 PRO 14 16 16 PRO PRO A . n A 1 15 GLY 15 17 17 GLY GLY A . n A 1 16 GLY 16 18 18 GLY GLY A . n A 1 17 SER 17 19 19 SER SER A . n A 1 18 LEU 18 20 20 LEU LEU A . n A 1 19 LYS 19 21 21 LYS LYS A . n A 1 20 LEU 20 22 22 LEU LEU A . n A 1 21 SER 21 23 23 SER SER A . n A 1 22 CYS 22 24 24 CYS CYS A . n A 1 23 ALA 23 25 25 ALA ALA A . n A 1 24 ALA 24 26 26 ALA ALA A . n A 1 25 SER 25 27 27 SER SER A . n A 1 26 GLY 26 28 28 GLY GLY A . n A 1 27 PHE 27 29 29 PHE PHE A . n A 1 28 THR 28 30 30 THR THR A . n A 1 29 PHE 29 31 31 PHE PHE A . n A 1 30 SER 30 32 32 SER SER A . n A 1 31 ARG 31 33 33 ARG ARG A . n A 1 32 TYR 32 34 34 TYR TYR A . n A 1 33 ALA 33 35 35 ALA ALA A . n A 1 34 MET 34 36 36 MET MET A . n A 1 35 SER 35 37 37 SER SER A . n A 1 36 TRP 36 38 38 TRP TRP A . n A 1 37 TYR 37 39 39 TYR TYR A . n A 1 38 ARG 38 40 40 ARG ARG A . n A 1 39 GLN 39 41 41 GLN GLN A . n A 1 40 ALA 40 42 42 ALA ALA A . n A 1 41 PRO 41 43 43 PRO PRO A . n A 1 42 GLY 42 44 44 GLY GLY A . n A 1 43 LYS 43 45 45 LYS LYS A . n A 1 44 GLU 44 46 46 GLU GLU A . n A 1 45 ARG 45 47 47 ARG ARG A . n A 1 46 GLU 46 48 48 GLU GLU A . n A 1 47 SER 47 49 49 SER SER A . n A 1 48 VAL 48 50 50 VAL VAL A . n A 1 49 ALA 49 51 51 ALA ALA A . n A 1 50 ARG 50 52 52 ARG ARG A . n A 1 51 ILE 51 53 53 ILE ILE A . n A 1 52 SER 52 54 54 SER SER A . n A 1 53 SER 53 55 55 SER SER A . n A 1 54 GLY 54 56 56 GLY GLY A . n A 1 55 GLY 55 57 57 GLY GLY A . n A 1 56 GLY 56 58 58 GLY GLY A . n A 1 57 THR 57 59 59 THR THR A . n A 1 58 ILE 58 60 60 ILE ILE A . n A 1 59 TYR 59 61 61 TYR TYR A . n A 1 60 TYR 60 62 62 TYR TYR A . n A 1 61 ALA 61 63 63 ALA ALA A . n A 1 62 ASP 62 64 64 ASP ASP A . n A 1 63 SER 63 65 65 SER SER A . n A 1 64 VAL 64 66 66 VAL VAL A . n A 1 65 LYS 65 67 67 LYS LYS A . n A 1 66 GLY 66 68 68 GLY GLY A . n A 1 67 ARG 67 69 69 ARG ARG A . n A 1 68 PHE 68 70 70 PHE PHE A . n A 1 69 THR 69 71 71 THR THR A . n A 1 70 ILE 70 72 72 ILE ILE A . n A 1 71 SER 71 73 73 SER SER A . n A 1 72 ARG 72 74 74 ARG ARG A . n A 1 73 GLU 73 75 75 GLU GLU A . n A 1 74 ASP 74 76 76 ASP ASP A . n A 1 75 ALA 75 77 77 ALA ALA A . n A 1 76 LYS 76 78 78 LYS LYS A . n A 1 77 ASN 77 79 79 ASN ASN A . n A 1 78 THR 78 80 80 THR THR A . n A 1 79 VAL 79 81 81 VAL VAL A . n A 1 80 TYR 80 82 82 TYR TYR A . n A 1 81 LEU 81 83 83 LEU LEU A . n A 1 82 GLN 82 84 84 GLN GLN A . n A 1 83 MET 83 85 85 MET MET A . n A 1 84 ASN 84 86 86 ASN ASN A . n A 1 85 SER 85 87 87 SER SER A . n A 1 86 LEU 86 88 88 LEU LEU A . n A 1 87 LYS 87 89 89 LYS LYS A . n A 1 88 PRO 88 90 90 PRO PRO A . n A 1 89 GLU 89 91 91 GLU GLU A . n A 1 90 ASP 90 92 92 ASP ASP A . n A 1 91 THR 91 93 93 THR THR A . n A 1 92 ALA 92 94 94 ALA ALA A . n A 1 93 VAL 93 95 95 VAL VAL A . n A 1 94 TYR 94 96 96 TYR TYR A . n A 1 95 TYR 95 97 97 TYR TYR A . n A 1 96 CYS 96 98 98 CYS CYS A . n A 1 97 TYR 97 99 99 TYR TYR A . n A 1 98 VAL 98 100 100 VAL VAL A . n A 1 99 GLY 99 101 101 GLY GLY A . n A 1 100 GLY 100 102 102 GLY GLY A . n A 1 101 PHE 101 103 103 PHE PHE A . n A 1 102 TRP 102 104 104 TRP TRP A . n A 1 103 GLY 103 105 105 GLY GLY A . n A 1 104 GLN 104 106 106 GLN GLN A . n A 1 105 GLY 105 107 107 GLY GLY A . n A 1 106 THR 106 108 108 THR THR A . n A 1 107 GLN 107 109 109 GLN GLN A . n A 1 108 VAL 108 110 110 VAL VAL A . n A 1 109 THR 109 111 111 THR THR A . n A 1 110 VAL 110 112 112 VAL VAL A . n A 1 111 SER 111 113 113 SER SER A . n A 1 112 SER 112 114 114 SER SER A . n A 1 113 GLY 113 115 115 GLY GLY A . n A 1 114 GLY 114 116 116 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 108 HOH HOH A . B 2 HOH 2 202 18 HOH HOH A . B 2 HOH 3 203 58 HOH HOH A . B 2 HOH 4 204 84 HOH HOH A . B 2 HOH 5 205 9 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 14 HOH HOH A . B 2 HOH 8 208 97 HOH HOH A . B 2 HOH 9 209 123 HOH HOH A . B 2 HOH 10 210 8 HOH HOH A . B 2 HOH 11 211 4 HOH HOH A . B 2 HOH 12 212 127 HOH HOH A . B 2 HOH 13 213 16 HOH HOH A . B 2 HOH 14 214 77 HOH HOH A . B 2 HOH 15 215 61 HOH HOH A . B 2 HOH 16 216 36 HOH HOH A . B 2 HOH 17 217 7 HOH HOH A . B 2 HOH 18 218 17 HOH HOH A . B 2 HOH 19 219 47 HOH HOH A . B 2 HOH 20 220 49 HOH HOH A . B 2 HOH 21 221 39 HOH HOH A . B 2 HOH 22 222 60 HOH HOH A . B 2 HOH 23 223 37 HOH HOH A . B 2 HOH 24 224 51 HOH HOH A . B 2 HOH 25 225 10 HOH HOH A . B 2 HOH 26 226 68 HOH HOH A . B 2 HOH 27 227 99 HOH HOH A . B 2 HOH 28 228 44 HOH HOH A . B 2 HOH 29 229 32 HOH HOH A . B 2 HOH 30 230 35 HOH HOH A . B 2 HOH 31 231 20 HOH HOH A . B 2 HOH 32 232 12 HOH HOH A . B 2 HOH 33 233 65 HOH HOH A . B 2 HOH 34 234 29 HOH HOH A . B 2 HOH 35 235 13 HOH HOH A . B 2 HOH 36 236 22 HOH HOH A . B 2 HOH 37 237 105 HOH HOH A . B 2 HOH 38 238 56 HOH HOH A . B 2 HOH 39 239 71 HOH HOH A . B 2 HOH 40 240 2 HOH HOH A . B 2 HOH 41 241 64 HOH HOH A . B 2 HOH 42 242 101 HOH HOH A . B 2 HOH 43 243 57 HOH HOH A . B 2 HOH 44 244 26 HOH HOH A . B 2 HOH 45 245 5 HOH HOH A . B 2 HOH 46 246 82 HOH HOH A . B 2 HOH 47 247 72 HOH HOH A . B 2 HOH 48 248 34 HOH HOH A . B 2 HOH 49 249 48 HOH HOH A . B 2 HOH 50 250 31 HOH HOH A . B 2 HOH 51 251 1 HOH HOH A . B 2 HOH 52 252 81 HOH HOH A . B 2 HOH 53 253 40 HOH HOH A . B 2 HOH 54 254 25 HOH HOH A . B 2 HOH 55 255 111 HOH HOH A . B 2 HOH 56 256 96 HOH HOH A . B 2 HOH 57 257 83 HOH HOH A . B 2 HOH 58 258 24 HOH HOH A . B 2 HOH 59 259 43 HOH HOH A . B 2 HOH 60 260 120 HOH HOH A . B 2 HOH 61 261 19 HOH HOH A . B 2 HOH 62 262 74 HOH HOH A . B 2 HOH 63 263 15 HOH HOH A . B 2 HOH 64 264 94 HOH HOH A . B 2 HOH 65 265 53 HOH HOH A . B 2 HOH 66 266 33 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 114 HOH HOH A . B 2 HOH 69 269 28 HOH HOH A . B 2 HOH 70 270 38 HOH HOH A . B 2 HOH 71 271 30 HOH HOH A . B 2 HOH 72 272 46 HOH HOH A . B 2 HOH 73 273 117 HOH HOH A . B 2 HOH 74 274 62 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 100 HOH HOH A . B 2 HOH 77 277 3 HOH HOH A . B 2 HOH 78 278 89 HOH HOH A . B 2 HOH 79 279 88 HOH HOH A . B 2 HOH 80 280 124 HOH HOH A . B 2 HOH 81 281 128 HOH HOH A . B 2 HOH 82 282 21 HOH HOH A . B 2 HOH 83 283 79 HOH HOH A . B 2 HOH 84 284 23 HOH HOH A . B 2 HOH 85 285 86 HOH HOH A . B 2 HOH 86 286 54 HOH HOH A . B 2 HOH 87 287 87 HOH HOH A . B 2 HOH 88 288 122 HOH HOH A . B 2 HOH 89 289 73 HOH HOH A . B 2 HOH 90 290 106 HOH HOH A . B 2 HOH 91 291 113 HOH HOH A . B 2 HOH 92 292 76 HOH HOH A . B 2 HOH 93 293 80 HOH HOH A . B 2 HOH 94 294 112 HOH HOH A . B 2 HOH 95 295 95 HOH HOH A . B 2 HOH 96 296 11 HOH HOH A . B 2 HOH 97 297 125 HOH HOH A . B 2 HOH 98 298 107 HOH HOH A . B 2 HOH 99 299 92 HOH HOH A . B 2 HOH 100 300 103 HOH HOH A . B 2 HOH 101 301 85 HOH HOH A . B 2 HOH 102 302 121 HOH HOH A . B 2 HOH 103 303 102 HOH HOH A . B 2 HOH 104 304 66 HOH HOH A . B 2 HOH 105 305 109 HOH HOH A . B 2 HOH 106 306 45 HOH HOH A . B 2 HOH 107 307 118 HOH HOH A . B 2 HOH 108 308 93 HOH HOH A . B 2 HOH 109 309 91 HOH HOH A . B 2 HOH 110 310 27 HOH HOH A . B 2 HOH 111 311 119 HOH HOH A . B 2 HOH 112 312 98 HOH HOH A . B 2 HOH 113 313 70 HOH HOH A . B 2 HOH 114 314 63 HOH HOH A . B 2 HOH 115 315 55 HOH HOH A . B 2 HOH 116 316 41 HOH HOH A . B 2 HOH 117 317 104 HOH HOH A . B 2 HOH 118 318 50 HOH HOH A . B 2 HOH 119 319 115 HOH HOH A . B 2 HOH 120 320 90 HOH HOH A . B 2 HOH 121 321 42 HOH HOH A . B 2 HOH 122 322 59 HOH HOH A . B 2 HOH 123 323 116 HOH HOH A . B 2 HOH 124 324 110 HOH HOH A . B 2 HOH 125 325 78 HOH HOH A . B 2 HOH 126 326 52 HOH HOH A . B 2 HOH 127 327 126 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 233 ? B HOH . 2 1 A HOH 318 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-04-06 2 'Structure model' 1 1 2016-04-27 3 'Structure model' 1 2 2016-05-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -29.2134 _pdbx_refine_tls.origin_y 10.7299 _pdbx_refine_tls.origin_z 4.4430 _pdbx_refine_tls.T[1][1] 0.1251 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0006 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0191 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1482 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0260 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.1205 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.0139 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.6631 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.1559 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 4.4696 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 1.2971 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.7168 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.1071 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.1668 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0199 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0628 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.1528 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0908 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0238 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1324 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0306 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 3 ? ? A 116 ? all 2 'X-RAY DIFFRACTION' 1 ? ? S 1 ? ? S 128 ? all # _pdbx_phasing_MR.entry_id 5H8D _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.890 _pdbx_phasing_MR.d_res_low_rotation 68.890 _pdbx_phasing_MR.d_res_high_translation 1.890 _pdbx_phasing_MR.d_res_low_translation 68.890 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 274 ? ? O A HOH 288 ? ? 2.11 2 1 O A HOH 287 ? ? O A HOH 297 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 87 ? ? 38.75 51.84 2 1 ALA A 94 ? ? 179.39 166.12 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 327 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.17 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #