HEADER HYDROLASE 28-DEC-15 5H9I TITLE CRYSTAL STRUCTURE OF GEOBACTER METALLIREDUCENS SMUG1 WITH XANTHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEOBACTER METALLIREDUCENS SMUG1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER METALLIREDUCENS (STRAIN GS-15 / ATCC SOURCE 3 53774 / DSM 7210); SOURCE 4 ORGANISM_TAXID: 269799; SOURCE 5 STRAIN: GS-15 / ATCC 53774 / DSM 7210; SOURCE 6 GENE: GMET_0095; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS SMUG1, DNA DAMAGE, BASE EXCISION REPAIR, SUBSTRATE SPECIFICITY, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,W.CAO,Z.ZHANG,J.SHEN REVDAT 3 08-NOV-23 5H9I 1 REMARK REVDAT 2 29-JUN-16 5H9I 1 JRNL REVDAT 1 27-APR-16 5H9I 0 JRNL AUTH Z.ZHANG,J.SHEN,Y.YANG,J.LI,W.CAO,W.XIE JRNL TITL STRUCTURAL BASIS OF SUBSTRATE SPECIFICITY IN GEOBACTER JRNL TITL 2 METALLIREDUCENS SMUG1 JRNL REF ACS CHEM.BIOL. V. 11 1729 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27071000 JRNL DOI 10.1021/ACSCHEMBIO.6B00164 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0637 - 3.6172 0.98 2727 151 0.1580 0.2174 REMARK 3 2 3.6172 - 2.8714 1.00 2739 145 0.1569 0.1806 REMARK 3 3 2.8714 - 2.5085 1.00 2729 140 0.1730 0.1940 REMARK 3 4 2.5085 - 2.2792 1.00 2676 154 0.1687 0.2187 REMARK 3 5 2.2792 - 2.1158 1.00 2720 136 0.1640 0.1912 REMARK 3 6 2.1158 - 1.9911 0.99 2687 152 0.1741 0.1794 REMARK 3 7 1.9911 - 1.8914 0.99 2681 149 0.1717 0.1974 REMARK 3 8 1.8914 - 1.8090 0.99 2690 132 0.1805 0.1966 REMARK 3 9 1.8090 - 1.7394 0.99 2677 141 0.1812 0.2099 REMARK 3 10 1.7394 - 1.6794 0.98 2663 145 0.1954 0.2293 REMARK 3 11 1.6794 - 1.6269 0.98 2692 126 0.1974 0.2185 REMARK 3 12 1.6269 - 1.5804 0.98 2647 144 0.2185 0.2635 REMARK 3 13 1.5804 - 1.5388 0.98 2643 153 0.2326 0.2600 REMARK 3 14 1.5388 - 1.5012 0.96 2617 115 0.2565 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 1934 REMARK 3 ANGLE : 2.308 2627 REMARK 3 CHIRALITY : 0.144 278 REMARK 3 PLANARITY : 0.015 346 REMARK 3 DIHEDRAL : 12.842 691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-21% PEG6000, 0.2M NACL OR (NH4)2SO4 REMARK 280 AND 0.1M MES (PH 6.0), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.48600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.16950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.48600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.16950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 236 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 539 O HOH A 555 1.58 REMARK 500 O HOH A 430 O HOH A 537 1.86 REMARK 500 O HOH A 433 O HOH A 541 1.89 REMARK 500 O HOH A 488 O HOH A 558 1.90 REMARK 500 O HOH A 479 O HOH A 489 1.92 REMARK 500 O HOH A 402 O HOH A 499 1.95 REMARK 500 O HOH A 405 O HOH A 543 1.98 REMARK 500 O HOH A 401 O HOH A 502 2.07 REMARK 500 O HOH A 537 O HOH A 555 2.08 REMARK 500 O HOH A 548 O HOH A 557 2.10 REMARK 500 O HOH A 544 O HOH A 556 2.13 REMARK 500 O HOH A 567 O HOH A 577 2.14 REMARK 500 O HOH A 402 O HOH A 465 2.18 REMARK 500 O HOH A 447 O HOH A 564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH A 550 1554 1.97 REMARK 500 O HOH A 548 O HOH A 572 4756 1.99 REMARK 500 O HOH A 455 O HOH A 471 2755 2.13 REMARK 500 O HOH A 498 O HOH A 539 2755 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 212 CB SER A 212 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 57 -67.96 -90.32 REMARK 500 ASN A 84 112.13 -160.16 REMARK 500 GLU A 93 135.37 -39.37 REMARK 500 LYS A 97 49.60 -145.91 REMARK 500 PRO A 213 -9.42 -57.72 REMARK 500 ASP A 221 75.12 -164.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XAN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEA A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H93 RELATED DB: PDB REMARK 900 RELATED ID: 5H98 RELATED DB: PDB REMARK 900 RELATED ID: 5H99 RELATED DB: PDB DBREF 5H9I A 1 237 UNP Q39ZI0 Q39ZI0_GEOMG 1 237 SEQADV 5H9I GLY A -2 UNP Q39ZI0 EXPRESSION TAG SEQADV 5H9I PRO A -1 UNP Q39ZI0 EXPRESSION TAG SEQADV 5H9I HIS A 0 UNP Q39ZI0 EXPRESSION TAG SEQRES 1 A 240 GLY PRO HIS MET THR GLY LEU ALA ALA ILE SER ASP ALA SEQRES 2 A 240 LEU ALA ALA ASP LEU ALA GLY LEU SER PHE SER SER PRO SEQRES 3 A 240 VAL ALA HIS VAL TYR ASN PRO LEU LEU TYR ALA ARG GLU SEQRES 4 A 240 PRO HIS VAL ALA TYR LEU SER ARG PHE GLY SER PRO PRO SEQRES 5 A 240 LYS GLU VAL LEU PHE VAL GLY MET ASN PRO GLY PRO TRP SEQRES 6 A 240 GLY MET ALA GLN THR GLY VAL PRO PHE GLY GLU VAL ALA SEQRES 7 A 240 VAL VAL THR GLU TRP LEU GLY ILE ASN GLY THR VAL THR SEQRES 8 A 240 ARG PRO ALA GLY GLU HIS PRO LYS LYS ARG VAL ASP GLY SEQRES 9 A 240 PHE ALA CYS ARG ARG SER GLU VAL SER GLY ARG ARG LEU SEQRES 10 A 240 TRP GLY PHE ILE ARG GLU ARG PHE GLY THR PRO GLU ARG SEQRES 11 A 240 PHE PHE ALA ARG PHE PHE VAL ALA ASN TYR CYS PRO LEU SEQRES 12 A 240 LEU PHE LEU THR ALA GLU GLY GLY ASN ILE THR PRO ASP SEQRES 13 A 240 LYS LEU ARG ARG GLY GLU GLN GLU PRO LEU PHE ALA ALA SEQRES 14 A 240 CYS ASP LEU ALA LEU ARG ARG THR VAL VAL LEU LEU ARG SEQRES 15 A 240 PRO ARG VAL VAL ILE GLY VAL GLY ALA PHE ALA GLU ALA SEQRES 16 A 240 ARG CYS HIS GLU ALA LEU GLU GLY PHE ASP VAL GLU VAL SEQRES 17 A 240 GLY ARG ILE ILE HIS PRO SER PRO ALA SER PRO ALA ALA SEQRES 18 A 240 ASN ARG ASP TRP ALA GLY THR ALA LEU ARG GLN LEU ALA SEQRES 19 A 240 GLU LEU GLY VAL ASP PHE HET XAN A 301 11 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET BME A 305 4 HET IPA A 306 4 HET LEA A 307 7 HETNAM XAN XANTHINE HETNAM GOL GLYCEROL HETNAM BME BETA-MERCAPTOETHANOL HETNAM IPA ISOPROPYL ALCOHOL HETNAM LEA PENTANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL HETSYN LEA VALERIC ACID FORMUL 2 XAN C5 H4 N4 O2 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 BME C2 H6 O S FORMUL 7 IPA C3 H8 O FORMUL 8 LEA C5 H10 O2 FORMUL 9 HOH *177(H2 O) HELIX 1 AA1 GLY A 3 GLY A 17 1 15 HELIX 2 AA2 ASN A 29 ALA A 34 1 6 HELIX 3 AA3 ALA A 34 GLY A 46 1 13 HELIX 4 AA4 GLY A 63 GLY A 68 1 6 HELIX 5 AA5 GLU A 73 TRP A 80 1 8 HELIX 6 AA6 ASP A 100 CYS A 104 5 5 HELIX 7 AA7 GLU A 108 GLY A 123 1 16 HELIX 8 AA8 THR A 124 ALA A 130 1 7 HELIX 9 AA9 THR A 151 LEU A 155 5 5 HELIX 10 AB1 ARG A 156 ARG A 179 1 24 HELIX 11 AB2 GLY A 187 GLU A 199 1 13 HELIX 12 AB3 SER A 215 LEU A 233 1 19 SHEET 1 AA1 3 HIS A 26 TYR A 28 0 SHEET 2 AA1 3 LEU A 141 LEU A 143 -1 O LEU A 141 N TYR A 28 SHEET 3 AA1 3 ASN A 149 ILE A 150 -1 O ILE A 150 N PHE A 142 SHEET 1 AA2 4 PHE A 132 ASN A 136 0 SHEET 2 AA2 4 VAL A 52 GLY A 56 1 N PHE A 54 O PHE A 133 SHEET 3 AA2 4 VAL A 182 VAL A 186 1 O VAL A 186 N VAL A 55 SHEET 4 AA2 4 GLU A 204 ILE A 208 1 O GLY A 206 N GLY A 185 CISPEP 1 SER A 22 PRO A 23 0 7.55 CISPEP 2 PRO A 48 PRO A 49 0 -0.59 SITE 1 AC1 10 MET A 57 ASN A 58 PRO A 70 PHE A 71 SITE 2 AC1 10 GLU A 108 SER A 110 ASN A 136 HIS A 210 SITE 3 AC1 10 HOH A 428 HOH A 476 SITE 1 AC2 8 LEU A 32 TYR A 33 ALA A 34 ARG A 35 SITE 2 AC2 8 GLU A 36 PRO A 37 THR A 86 THR A 88 SITE 1 AC3 10 GLU A 36 PRO A 37 ARG A 44 ILE A 83 SITE 2 AC3 10 ASN A 84 GLY A 85 PRO A 125 HOH A 409 SITE 3 AC3 10 HOH A 412 HOH A 420 SITE 1 AC4 6 PRO A -1 ALA A 10 ASP A 14 ARG A 89 SITE 2 AC4 6 LEU A 169 ARG A 173 SITE 1 AC5 5 GLY A 85 THR A 86 VAL A 87 ASP A 100 SITE 2 AC5 5 PHE A 102 SITE 1 AC6 4 THR A 78 GLU A 79 GLY A 82 ASN A 84 SITE 1 AC7 8 ARG A 121 PHE A 122 ARG A 127 ARG A 131 SITE 2 AC7 8 LEU A 227 ALA A 231 VAL A 235 PHE A 237 CRYST1 92.972 64.339 45.654 90.00 111.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010756 0.000000 0.004215 0.00000 SCALE2 0.000000 0.015543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023526 0.00000