HEADER HYDROLASE 30-DEC-15 5HAP TITLE OXA-48 BETA-LACTAMASE - S70A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-265; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS HYDROLASE, SERINE BETA-LACTAMASE EXPDTA X-RAY DIFFRACTION AUTHOR V.STOJANOSKI,C.J.ADAMSKI,L.HU,S.C.MEHTA,B.SANKARAN,B.V.V.PRASAD, AUTHOR 2 T.G.PALZKILL REVDAT 6 15-NOV-23 5HAP 1 REMARK REVDAT 5 27-SEP-23 5HAP 1 LINK REVDAT 4 11-DEC-19 5HAP 1 REMARK REVDAT 3 13-SEP-17 5HAP 1 REMARK REVDAT 2 29-MAR-17 5HAP 1 COMPND REVDAT 1 07-SEP-16 5HAP 0 JRNL AUTH V.STOJANOSKI,C.J.ADAMSKI,L.HU,S.C.MEHTA,B.SANKARAN,P.ZWART, JRNL AUTH 2 B.V.PRASAD,T.PALZKILL JRNL TITL REMOVAL OF THE SIDE CHAIN AT THE ACTIVE-SITE SERINE BY A JRNL TITL 2 GLYCINE SUBSTITUTION INCREASES THE STABILITY OF A WIDE RANGE JRNL TITL 3 OF SERINE BETA-LACTAMASES BY RELIEVING STERIC STRAIN. JRNL REF BIOCHEMISTRY V. 55 2479 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27073009 JRNL DOI 10.1021/ACS.BIOCHEM.6B00056 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.0479 - 5.8706 1.00 3413 172 0.1583 0.1425 REMARK 3 2 5.8706 - 4.6603 1.00 3399 179 0.1529 0.1757 REMARK 3 3 4.6603 - 4.0714 1.00 3397 188 0.1404 0.1648 REMARK 3 4 4.0714 - 3.6992 1.00 3430 147 0.1553 0.2018 REMARK 3 5 3.6992 - 3.4341 1.00 3395 188 0.1725 0.2117 REMARK 3 6 3.4341 - 3.2317 1.00 3404 185 0.1816 0.2008 REMARK 3 7 3.2317 - 3.0699 1.00 3409 175 0.1870 0.2405 REMARK 3 8 3.0699 - 2.9362 1.00 3397 165 0.1936 0.2279 REMARK 3 9 2.9362 - 2.8232 1.00 3469 134 0.1869 0.2710 REMARK 3 10 2.8232 - 2.7258 1.00 3367 208 0.1806 0.2138 REMARK 3 11 2.7258 - 2.6405 1.00 3433 163 0.1873 0.2446 REMARK 3 12 2.6405 - 2.5651 1.00 3415 166 0.1914 0.2007 REMARK 3 13 2.5651 - 2.4975 1.00 3374 168 0.1808 0.2614 REMARK 3 14 2.4975 - 2.4366 1.00 3423 155 0.1862 0.2289 REMARK 3 15 2.4366 - 2.3812 1.00 3438 156 0.1864 0.2174 REMARK 3 16 2.3812 - 2.3305 1.00 3416 177 0.1964 0.2536 REMARK 3 17 2.3305 - 2.2839 1.00 3406 174 0.2089 0.2713 REMARK 3 18 2.2839 - 2.2408 1.00 3398 170 0.2532 0.2915 REMARK 3 19 2.2408 - 2.2008 1.00 3380 201 0.2094 0.2740 REMARK 3 20 2.2008 - 2.1635 1.00 3414 189 0.2141 0.2212 REMARK 3 21 2.1635 - 2.1286 1.00 3390 156 0.2180 0.2943 REMARK 3 22 2.1286 - 2.0958 1.00 3413 173 0.2262 0.2763 REMARK 3 23 2.0958 - 2.0650 1.00 3371 194 0.2610 0.2808 REMARK 3 24 2.0650 - 2.0359 1.00 3453 153 0.2444 0.2724 REMARK 3 25 2.0359 - 2.0084 1.00 3378 210 0.2395 0.2780 REMARK 3 26 2.0084 - 1.9823 1.00 3335 217 0.2580 0.2716 REMARK 3 27 1.9823 - 1.9575 1.00 3444 180 0.2643 0.3109 REMARK 3 28 1.9575 - 1.9340 1.00 3343 201 0.2861 0.3003 REMARK 3 29 1.9340 - 1.9115 1.00 3386 176 0.3302 0.3622 REMARK 3 30 1.9115 - 1.8900 1.00 3404 199 0.3175 0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4197 REMARK 3 ANGLE : 0.847 5622 REMARK 3 CHIRALITY : 0.055 580 REMARK 3 PLANARITY : 0.005 709 REMARK 3 DIHEDRAL : 13.314 2476 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 57.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 21.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5 AND 25% W/V PEG REMARK 280 1000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.63400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.81700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.72550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.90850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.54250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.63400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.81700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.90850 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.72550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 134.54250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 150 N SER A 150 CA 0.191 REMARK 500 SER A 150 N SER A 150 CA 0.202 REMARK 500 SER A 150 CA SER A 150 C 0.219 REMARK 500 SER A 150 CA SER A 150 C 0.174 REMARK 500 SER A 171 N SER A 171 CA 0.284 REMARK 500 SER A 171 N SER A 171 CA 0.186 REMARK 500 SER A 171 CA SER A 171 C 0.180 REMARK 500 SER A 171 CA SER A 171 C 0.247 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 221 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -137.99 51.16 REMARK 500 SER A 155 11.34 -150.86 REMARK 500 ASP A 159 17.73 -145.13 REMARK 500 ASN B 58 89.60 -162.37 REMARK 500 ALA B 69 -135.06 53.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 63 O REMARK 620 2 HOH A 483 O 68.8 REMARK 620 3 HOH A 506 O 112.4 101.6 REMARK 620 4 ASN B 63 O 38.9 34.3 97.1 REMARK 620 5 HOH B 417 O 85.6 117.9 140.4 116.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 179 O REMARK 620 2 HOH B 438 O 111.5 REMARK 620 3 HOH B 468 O 101.1 140.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HAI RELATED DB: PDB REMARK 900 RELATED ID: 5HAQ RELATED DB: PDB REMARK 900 RELATED ID: 5HAR RELATED DB: PDB DBREF 5HAP A 25 265 UNP Q6XEC0 Q6XEC0_KLEPN 25 265 DBREF 5HAP B 25 265 UNP Q6XEC0 Q6XEC0_KLEPN 25 265 SEQADV 5HAP ALA A 70 UNP Q6XEC0 SER 70 ENGINEERED MUTATION SEQADV 5HAP ALA B 70 UNP Q6XEC0 SER 70 ENGINEERED MUTATION SEQRES 1 A 241 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 A 241 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 A 241 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 A 241 GLN ALA PHE LEU PRO ALA ALA THR PHE KCX ILE PRO ASN SEQRES 5 A 241 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 A 241 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 A 241 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 A 241 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 A 241 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 A 241 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 A 241 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 A 241 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 A 241 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 A 241 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 A 241 ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE SEQRES 16 A 241 GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL SEQRES 17 A 241 TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP SEQRES 18 A 241 GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU SEQRES 19 A 241 LYS GLN GLU LYS ILE ILE PRO SEQRES 1 B 241 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU SEQRES 2 B 241 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN SEQRES 3 B 241 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN SEQRES 4 B 241 GLN ALA PHE LEU PRO ALA ALA THR PHE KCX ILE PRO ASN SEQRES 5 B 241 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU SEQRES 6 B 241 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE SEQRES 7 B 241 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET SEQRES 8 B 241 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG SEQRES 9 B 241 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA SEQRES 10 B 241 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SEQRES 11 B 241 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR SEQRES 12 B 241 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS SEQRES 13 B 241 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN SEQRES 14 B 241 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG SEQRES 15 B 241 ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE SEQRES 16 B 241 GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL SEQRES 17 B 241 TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP SEQRES 18 B 241 GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU SEQRES 19 B 241 LYS GLN GLU LYS ILE ILE PRO MODRES 5HAP KCX A 73 LYS MODIFIED RESIDUE MODRES 5HAP KCX B 73 LYS MODIFIED RESIDUE HET KCX A 73 12 HET KCX B 73 12 HET CL A 301 1 HET 1PE A 302 16 HET PGE A 303 10 HET PGE A 304 10 HET NA A 305 1 HET PEG A 306 7 HET PEG A 307 7 HET PEG A 308 7 HET PEG A 309 7 HET MPD A 310 8 HET NA B 301 1 HET PEG B 302 7 HET PEG B 303 7 HET PEG B 304 7 HET PEG B 305 7 HET PG4 B 306 13 HET EDO B 307 4 HET EDO B 308 4 HET EDO B 309 4 HET EDO B 310 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 CL CL 1- FORMUL 4 1PE C10 H22 O6 FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 NA 2(NA 1+) FORMUL 8 PEG 8(C4 H10 O3) FORMUL 12 MPD C6 H14 O2 FORMUL 18 PG4 C8 H18 O5 FORMUL 19 EDO 4(C2 H6 O2) FORMUL 23 HOH *277(H2 O) HELIX 1 AA1 TRP A 31 GLU A 37 1 7 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 ASP A 143 1 13 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 SER A 165 HIS A 178 1 14 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 GLU B 37 1 7 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASN B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 ASP B 143 1 13 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 ALA B 166 HIS B 178 1 13 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 GLN A 26 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 7 GLN B 26 GLU B 27 0 SHEET 2 AA2 7 GLN B 53 THR B 56 1 O THR B 56 N GLN B 26 SHEET 3 AA2 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 AA2 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA2 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA2 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA2 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 AA3 2 ALA B 65 PHE B 66 0 SHEET 2 AA3 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 LINK C PHE A 72 N KCX A 73 1555 1555 1.32 LINK C KCX A 73 N ILE A 74 1555 1555 1.32 LINK C PHE B 72 N KCX B 73 1555 1555 1.31 LINK C KCX B 73 N ILE B 74 1555 1555 1.33 LINK O ASN A 63 NA NA A 305 1555 1555 2.35 LINK NA NA A 305 O HOH A 483 1555 1555 2.76 LINK NA NA A 305 O HOH A 506 1555 1555 2.48 LINK NA NA A 305 O ASN B 63 7544 1555 2.50 LINK NA NA A 305 O HOH B 417 1555 7654 2.69 LINK O ASN B 179 NA NA B 301 1555 1555 2.92 LINK NA NA B 301 O HOH B 438 1555 1555 2.53 LINK NA NA B 301 O HOH B 468 1555 1555 2.49 CISPEP 1 GLU A 216 PRO A 217 0 0.90 CISPEP 2 GLU B 216 PRO B 217 0 -1.64 SITE 1 AC1 3 ARG A 206 HOH A 553 ARG B 206 SITE 1 AC2 6 ALA A 65 PRO A 217 HOH A 468 ASN B 146 SITE 2 AC2 6 ASP B 148 GLY B 161 SITE 1 AC3 3 GLN A 98 ARG B 134 LYS B 137 SITE 1 AC4 4 ARG A 174 LYS A 175 HIS A 178 LYS A 180 SITE 1 AC5 5 ASN A 63 HOH A 483 HOH A 506 ASN B 63 SITE 2 AC5 5 HOH B 417 SITE 1 AC6 4 ARG A 128 HOH A 499 GLN B 129 ARG B 134 SITE 1 AC7 4 ASP A 82 SER A 184 ARG A 186 HOH A 505 SITE 1 AC8 6 ILE A 102 THR A 104 TYR A 117 HOH A 410 SITE 2 AC8 6 HOH A 512 PEG B 303 SITE 1 AC9 9 LEU A 228 ASP A 229 HOH A 402 HOH A 435 SITE 2 AC9 9 HOH A 445 ASN B 110 ILE B 112 THR B 113 SITE 3 AC9 9 LYS B 116 SITE 1 AD1 4 TRP A 47 ILE A 170 SER A 171 ARG A 174 SITE 1 AD2 3 ASN B 179 HOH B 438 HOH B 468 SITE 1 AD3 2 ARG B 174 HIS B 178 SITE 1 AD4 5 TYR A 117 PEG A 308 HOH A 410 ASP B 202 SITE 2 AD4 5 HOH B 401 SITE 1 AD5 2 TRP B 47 ARG B 174 SITE 1 AD6 1 ASP B 82 SITE 1 AD7 1 GLU B 185 SITE 1 AD8 4 ASP A 229 ASP B 108 ASN B 110 THR B 113 SITE 1 AD9 1 HIS B 178 SITE 1 AE1 1 THR B 99 CRYST1 121.900 121.900 161.451 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008203 0.004736 0.000000 0.00000 SCALE2 0.000000 0.009473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006194 0.00000