HEADER HYDROLASE 31-DEC-15 5HBC TITLE INTERMEDIATE STRUCTURE OF IRON-SATURATED C-LOBE OF BOVINE LACTOFERRIN TITLE 2 AT 2.79 ANGSTROM RESOLUTION INDICATES THE SOFTENING OF IRON TITLE 3 COORDINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOTRANSFERRIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 361-708; COMPND 5 SYNONYM: LACTOFERRIN; COMPND 6 EC: 3.4.21.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS C-LOBE, LACTOFERRIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SINGH,N.RASTOGI,P.K.SINGH,T.K.TYAGI,P.KAUR,S.SHARMA,T.P.SINGH REVDAT 5 16-OCT-24 5HBC 1 REMARK REVDAT 4 08-NOV-23 5HBC 1 HETSYN REVDAT 3 29-JUL-20 5HBC 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 20-JUL-16 5HBC 1 JRNL REVDAT 1 20-JAN-16 5HBC 0 JRNL AUTH N.RASTOGI,A.SINGH,P.K.SINGH,T.K.TYAGI,S.PANDEY,K.SHIN, JRNL AUTH 2 P.KAUR,S.SHARMA,T.P.SINGH JRNL TITL STRUCTURE OF IRON SATURATED C-LOBE OF BOVINE LACTOFERRIN AT JRNL TITL 2 PH 6.8 INDICATES A WEAKENING OF IRON COORDINATION JRNL REF PROTEINS V. 84 591 2016 JRNL REFN ESSN 1097-0134 JRNL PMID 26850578 JRNL DOI 10.1002/PROT.25004 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 25919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -3.15000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.714 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5608 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5228 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7661 ; 1.857 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11991 ; 3.683 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 7.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;40.204 ;25.042 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;20.111 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.866 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 874 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6318 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1220 ; 0.025 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2782 ; 4.844 ; 6.535 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2781 ; 4.844 ; 6.533 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3474 ; 7.446 ; 9.792 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3475 ; 7.445 ; 9.794 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2826 ; 5.065 ; 7.056 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2821 ; 5.032 ; 7.060 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4135 ; 7.626 ;10.409 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6509 ;10.155 ;52.787 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6507 ;10.153 ;52.786 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.788 REMARK 200 RESOLUTION RANGE LOW (A) : 39.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M HEPES, 20% PEG 20000, PH 6.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.82700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.82700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 532 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR B 433 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 416 164.83 -40.57 REMARK 500 SER A 418 -60.03 -98.36 REMARK 500 SER A 421 37.46 -77.86 REMARK 500 SER A 422 38.36 -165.39 REMARK 500 ALA A 460 163.83 175.75 REMARK 500 ASP A 462 -4.72 75.42 REMARK 500 TRP A 467 -59.97 -135.09 REMARK 500 GLN A 477 -70.82 -73.58 REMARK 500 ALA A 482 47.96 -95.97 REMARK 500 ASP A 508 -153.12 -96.22 REMARK 500 CYS A 515 -8.79 79.09 REMARK 500 SER A 519 1.44 -63.21 REMARK 500 ASN A 553 51.61 74.31 REMARK 500 ARG A 566 -44.75 -22.61 REMARK 500 CYS A 587 52.43 -117.76 REMARK 500 HIS A 595 162.23 -45.38 REMARK 500 LYS A 623 -56.34 -29.97 REMARK 500 THR A 636 7.68 82.09 REMARK 500 LEU A 640 -55.49 70.10 REMARK 500 SER B 417 -160.49 -113.28 REMARK 500 SER B 418 -60.29 -126.58 REMARK 500 HIS B 420 14.36 56.27 REMARK 500 SER B 421 21.24 -79.98 REMARK 500 ALA B 460 153.10 177.03 REMARK 500 ASP B 462 -20.95 80.93 REMARK 500 TRP B 467 -64.57 -125.77 REMARK 500 ALA B 482 63.10 -101.35 REMARK 500 ALA B 492 78.01 -119.46 REMARK 500 CYS B 515 9.44 84.49 REMARK 500 VAL B 543 -154.63 -138.70 REMARK 500 LEU B 640 -57.22 72.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 704 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 395 OD2 REMARK 620 2 TYR A 433 OH 118.0 REMARK 620 3 TYR A 526 OH 150.8 87.3 REMARK 620 4 BCT A 705 O1 85.1 146.4 79.6 REMARK 620 5 BCT A 705 O2 75.4 95.7 118.9 65.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 706 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 395 OD2 REMARK 620 2 TYR B 433 OH 101.2 REMARK 620 3 TYR B 526 OH 167.5 91.2 REMARK 620 4 BCT B 707 O1 81.6 157.8 86.5 REMARK 620 5 BCT B 707 O2 78.6 95.5 99.4 63.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQO RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL MUTATIONS HAVE OCCURRED AT 584 ASN AND 627 LYS DBREF 5HBC A 342 689 UNP P24627 TRFL_BOVIN 361 708 DBREF 5HBC B 342 689 UNP P24627 TRFL_BOVIN 361 708 SEQADV 5HBC LYS A 565 UNP P24627 ASN 584 SEE SEQUENCE DETAILS SEQADV 5HBC GLU A 608 UNP P24627 LYS 627 SEE SEQUENCE DETAILS SEQADV 5HBC LYS B 565 UNP P24627 ASN 584 SEE SEQUENCE DETAILS SEQADV 5HBC GLU B 608 UNP P24627 LYS 627 SEE SEQUENCE DETAILS SEQRES 1 A 348 TYR THR ARG VAL VAL TRP CYS ALA VAL GLY PRO GLU GLU SEQRES 2 A 348 GLN LYS LYS CYS GLN GLN TRP SER GLN GLN SER GLY GLN SEQRES 3 A 348 ASN VAL THR CYS ALA THR ALA SER THR THR ASP ASP CYS SEQRES 4 A 348 ILE VAL LEU VAL LEU LYS GLY GLU ALA ASP ALA LEU ASN SEQRES 5 A 348 LEU ASP GLY GLY TYR ILE TYR THR ALA GLY LYS CYS GLY SEQRES 6 A 348 LEU VAL PRO VAL LEU ALA GLU ASN ARG LYS SER SER LYS SEQRES 7 A 348 HIS SER SER LEU ASP CYS VAL LEU ARG PRO THR GLU GLY SEQRES 8 A 348 TYR LEU ALA VAL ALA VAL VAL LYS LYS ALA ASN GLU GLY SEQRES 9 A 348 LEU THR TRP ASN SER LEU LYS ASP LYS LYS SER CYS HIS SEQRES 10 A 348 THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE PRO MET SEQRES 11 A 348 GLY LEU ILE VAL ASN GLN THR GLY SER CYS ALA PHE ASP SEQRES 12 A 348 GLU PHE PHE SER GLN SER CYS ALA PRO GLY ALA ASP PRO SEQRES 13 A 348 LYS SER ARG LEU CYS ALA LEU CYS ALA GLY ASP ASP GLN SEQRES 14 A 348 GLY LEU ASP LYS CYS VAL PRO ASN SER LYS GLU LYS TYR SEQRES 15 A 348 TYR GLY TYR THR GLY ALA PHE ARG CYS LEU ALA GLU ASP SEQRES 16 A 348 VAL GLY ASP VAL ALA PHE VAL LYS ASN ASP THR VAL TRP SEQRES 17 A 348 GLU ASN THR ASN GLY GLU SER THR ALA ASP TRP ALA LYS SEQRES 18 A 348 ASN LEU LYS ARG GLU ASP PHE ARG LEU LEU CYS LEU ASP SEQRES 19 A 348 GLY THR ARG LYS PRO VAL THR GLU ALA GLN SER CYS HIS SEQRES 20 A 348 LEU ALA VAL ALA PRO ASN HIS ALA VAL VAL SER ARG SER SEQRES 21 A 348 ASP ARG ALA ALA HIS VAL GLU GLN VAL LEU LEU HIS GLN SEQRES 22 A 348 GLN ALA LEU PHE GLY LYS ASN GLY LYS ASN CYS PRO ASP SEQRES 23 A 348 LYS PHE CYS LEU PHE LYS SER GLU THR LYS ASN LEU LEU SEQRES 24 A 348 PHE ASN ASP ASN THR GLU CYS LEU ALA LYS LEU GLY GLY SEQRES 25 A 348 ARG PRO THR TYR GLU GLU TYR LEU GLY THR GLU TYR VAL SEQRES 26 A 348 THR ALA ILE ALA ASN LEU LYS LYS CYS SER THR SER PRO SEQRES 27 A 348 LEU LEU GLU ALA CYS ALA PHE LEU THR ARG SEQRES 1 B 348 TYR THR ARG VAL VAL TRP CYS ALA VAL GLY PRO GLU GLU SEQRES 2 B 348 GLN LYS LYS CYS GLN GLN TRP SER GLN GLN SER GLY GLN SEQRES 3 B 348 ASN VAL THR CYS ALA THR ALA SER THR THR ASP ASP CYS SEQRES 4 B 348 ILE VAL LEU VAL LEU LYS GLY GLU ALA ASP ALA LEU ASN SEQRES 5 B 348 LEU ASP GLY GLY TYR ILE TYR THR ALA GLY LYS CYS GLY SEQRES 6 B 348 LEU VAL PRO VAL LEU ALA GLU ASN ARG LYS SER SER LYS SEQRES 7 B 348 HIS SER SER LEU ASP CYS VAL LEU ARG PRO THR GLU GLY SEQRES 8 B 348 TYR LEU ALA VAL ALA VAL VAL LYS LYS ALA ASN GLU GLY SEQRES 9 B 348 LEU THR TRP ASN SER LEU LYS ASP LYS LYS SER CYS HIS SEQRES 10 B 348 THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE PRO MET SEQRES 11 B 348 GLY LEU ILE VAL ASN GLN THR GLY SER CYS ALA PHE ASP SEQRES 12 B 348 GLU PHE PHE SER GLN SER CYS ALA PRO GLY ALA ASP PRO SEQRES 13 B 348 LYS SER ARG LEU CYS ALA LEU CYS ALA GLY ASP ASP GLN SEQRES 14 B 348 GLY LEU ASP LYS CYS VAL PRO ASN SER LYS GLU LYS TYR SEQRES 15 B 348 TYR GLY TYR THR GLY ALA PHE ARG CYS LEU ALA GLU ASP SEQRES 16 B 348 VAL GLY ASP VAL ALA PHE VAL LYS ASN ASP THR VAL TRP SEQRES 17 B 348 GLU ASN THR ASN GLY GLU SER THR ALA ASP TRP ALA LYS SEQRES 18 B 348 ASN LEU LYS ARG GLU ASP PHE ARG LEU LEU CYS LEU ASP SEQRES 19 B 348 GLY THR ARG LYS PRO VAL THR GLU ALA GLN SER CYS HIS SEQRES 20 B 348 LEU ALA VAL ALA PRO ASN HIS ALA VAL VAL SER ARG SER SEQRES 21 B 348 ASP ARG ALA ALA HIS VAL GLU GLN VAL LEU LEU HIS GLN SEQRES 22 B 348 GLN ALA LEU PHE GLY LYS ASN GLY LYS ASN CYS PRO ASP SEQRES 23 B 348 LYS PHE CYS LEU PHE LYS SER GLU THR LYS ASN LEU LEU SEQRES 24 B 348 PHE ASN ASP ASN THR GLU CYS LEU ALA LYS LEU GLY GLY SEQRES 25 B 348 ARG PRO THR TYR GLU GLU TYR LEU GLY THR GLU TYR VAL SEQRES 26 B 348 THR ALA ILE ALA ASN LEU LYS LYS CYS SER THR SER PRO SEQRES 27 B 348 LEU LEU GLU ALA CYS ALA PHE LEU THR ARG HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET FE A 704 1 HET BCT A 705 4 HET NAG B 704 14 HET NAG B 705 14 HET FE B 706 1 HET BCT B 707 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FE FE (III) ION HETNAM BCT BICARBONATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 6 FE 2(FE 3+) FORMUL 7 BCT 2(C H O3 1-) FORMUL 12 HOH *71(H2 O) HELIX 1 AA1 GLY A 351 SER A 365 1 15 HELIX 2 AA2 THR A 376 GLY A 387 1 12 HELIX 3 AA3 ASP A 395 CYS A 405 1 11 HELIX 4 AA4 THR A 447 LEU A 451 5 5 HELIX 5 AA5 TRP A 467 GLY A 479 1 13 HELIX 6 AA6 ALA A 482 PHE A 487 1 6 HELIX 7 AA7 SER A 499 ALA A 503 5 5 HELIX 8 AA8 TYR A 524 GLU A 535 1 12 HELIX 9 AA9 ASN A 545 GLU A 550 1 6 HELIX 10 AB1 LYS A 565 GLU A 567 5 3 HELIX 11 AB2 PRO A 580 SER A 586 5 7 HELIX 12 AB3 ARG A 603 GLY A 619 1 17 HELIX 13 AB4 THR A 656 GLY A 662 1 7 HELIX 14 AB5 GLY A 662 LYS A 674 1 13 HELIX 15 AB6 SER A 678 ALA A 685 1 8 HELIX 16 AB7 PHE A 686 ARG A 689 5 4 HELIX 17 AB8 GLY B 351 GLY B 366 1 16 HELIX 18 AB9 THR B 376 GLY B 387 1 12 HELIX 19 AC1 ASP B 395 CYS B 405 1 11 HELIX 20 AC2 THR B 447 LEU B 451 5 5 HELIX 21 AC3 TRP B 467 GLY B 479 1 13 HELIX 22 AC4 ALA B 482 PHE B 486 5 5 HELIX 23 AC5 TYR B 524 GLU B 535 1 12 HELIX 24 AC6 ASN B 545 ASN B 551 1 7 HELIX 25 AC7 ALA B 558 ASN B 563 1 6 HELIX 26 AC8 PRO B 580 CYS B 587 5 8 HELIX 27 AC9 ARG B 603 GLY B 619 1 17 HELIX 28 AD1 THR B 656 GLY B 662 1 7 HELIX 29 AD2 GLY B 662 LYS B 673 1 12 HELIX 30 AD3 LYS B 674 SER B 676 5 3 HELIX 31 AD4 SER B 678 THR B 688 1 11 SHEET 1 AA1 2 VAL A 345 VAL A 350 0 SHEET 2 AA1 2 VAL A 369 ALA A 374 1 O THR A 370 N TRP A 347 SHEET 1 AA2 4 ALA A 391 LEU A 394 0 SHEET 2 AA2 4 ALA A 596 SER A 599 -1 O ALA A 596 N LEU A 394 SHEET 3 AA2 4 VAL A 408 ASN A 414 -1 N VAL A 408 O SER A 599 SHEET 4 AA2 4 CYS A 647 ALA A 649 -1 O ALA A 649 N ALA A 412 SHEET 1 AA3 6 GLN A 489 CYS A 491 0 SHEET 2 AA3 6 LYS A 455 HIS A 458 1 N HIS A 458 O CYS A 491 SHEET 3 AA3 6 VAL A 540 LYS A 544 1 O PHE A 542 N CYS A 457 SHEET 4 AA3 6 TYR A 433 LYS A 440 -1 N VAL A 436 O VAL A 543 SHEET 5 AA3 6 PHE A 569 LEU A 572 -1 O ARG A 570 N VAL A 439 SHEET 6 AA3 6 ARG A 578 LYS A 579 -1 O LYS A 579 N LEU A 571 SHEET 1 AA4 5 GLN A 489 CYS A 491 0 SHEET 2 AA4 5 LYS A 455 HIS A 458 1 N HIS A 458 O CYS A 491 SHEET 3 AA4 5 VAL A 540 LYS A 544 1 O PHE A 542 N CYS A 457 SHEET 4 AA4 5 TYR A 433 LYS A 440 -1 N VAL A 436 O VAL A 543 SHEET 5 AA4 5 ALA A 590 ALA A 592 -1 O ALA A 590 N ALA A 435 SHEET 1 AA5 2 VAL B 345 VAL B 350 0 SHEET 2 AA5 2 VAL B 369 ALA B 374 1 O THR B 370 N TRP B 347 SHEET 1 AA6 4 ALA B 391 LEU B 394 0 SHEET 2 AA6 4 ALA B 596 SER B 599 -1 O VAL B 598 N LEU B 392 SHEET 3 AA6 4 VAL B 408 ARG B 415 -1 N VAL B 410 O VAL B 597 SHEET 4 AA6 4 THR B 645 ALA B 649 -1 O GLU B 646 N ASN B 414 SHEET 1 AA7 6 GLN B 489 CYS B 491 0 SHEET 2 AA7 6 LYS B 455 CYS B 457 1 N SER B 456 O GLN B 489 SHEET 3 AA7 6 VAL B 540 LYS B 544 1 O PHE B 542 N CYS B 457 SHEET 4 AA7 6 TYR B 433 LYS B 440 -1 N VAL B 438 O ALA B 541 SHEET 5 AA7 6 PHE B 569 LEU B 572 -1 O ARG B 570 N VAL B 439 SHEET 6 AA7 6 ARG B 578 LYS B 579 -1 O LYS B 579 N LEU B 571 SHEET 1 AA8 5 GLN B 489 CYS B 491 0 SHEET 2 AA8 5 LYS B 455 CYS B 457 1 N SER B 456 O GLN B 489 SHEET 3 AA8 5 VAL B 540 LYS B 544 1 O PHE B 542 N CYS B 457 SHEET 4 AA8 5 TYR B 433 LYS B 440 -1 N VAL B 438 O ALA B 541 SHEET 5 AA8 5 ALA B 590 ALA B 592 -1 O ALA B 590 N ALA B 435 SSBOND 1 CYS A 348 CYS A 380 1555 1555 2.14 SSBOND 2 CYS A 358 CYS A 371 1555 1555 2.11 SSBOND 3 CYS A 405 CYS A 684 1555 1555 2.14 SSBOND 4 CYS A 425 CYS A 647 1555 1555 2.05 SSBOND 5 CYS A 457 CYS A 532 1555 1555 2.04 SSBOND 6 CYS A 481 CYS A 675 1555 1555 2.05 SSBOND 7 CYS A 491 CYS A 505 1555 1555 2.06 SSBOND 8 CYS A 502 CYS A 515 1555 1555 2.04 SSBOND 9 CYS A 573 CYS A 587 1555 1555 2.03 SSBOND 10 CYS A 625 CYS A 630 1555 1555 2.09 SSBOND 11 CYS B 348 CYS B 380 1555 1555 2.11 SSBOND 12 CYS B 358 CYS B 371 1555 1555 2.06 SSBOND 13 CYS B 405 CYS B 684 1555 1555 2.05 SSBOND 14 CYS B 425 CYS B 647 1555 1555 2.05 SSBOND 15 CYS B 457 CYS B 532 1555 1555 2.11 SSBOND 16 CYS B 481 CYS B 675 1555 1555 2.01 SSBOND 17 CYS B 491 CYS B 505 1555 1555 2.09 SSBOND 18 CYS B 502 CYS B 515 1555 1555 2.05 SSBOND 19 CYS B 573 CYS B 587 1555 1555 2.06 SSBOND 20 CYS B 625 CYS B 630 1555 1555 2.12 LINK ND2 ASN A 368 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 545 C1 NAG D 1 1555 1555 1.41 LINK ND2 ASN B 368 C1 NAG B 704 1555 1555 1.46 LINK ND2 ASN B 476 C1 NAG B 705 1555 1555 1.46 LINK ND2 ASN B 545 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.47 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.46 LINK OD2 ASP A 395 FE FE A 704 1555 1555 2.31 LINK OH TYR A 433 FE FE A 704 1555 1555 2.17 LINK OH TYR A 526 FE FE A 704 1555 1555 2.27 LINK FE FE A 704 O1 BCT A 705 1555 1555 2.11 LINK FE FE A 704 O2 BCT A 705 1555 1555 2.06 LINK OD2 ASP B 395 FE FE B 706 1555 1555 2.02 LINK OH TYR B 433 FE FE B 706 1555 1555 2.16 LINK OH TYR B 526 FE FE B 706 1555 1555 2.08 LINK FE FE B 706 O1 BCT B 707 1555 1555 2.21 LINK FE FE B 706 O2 BCT B 707 1555 1555 2.10 CISPEP 1 CYS A 625 PRO A 626 0 4.92 CISPEP 2 CYS B 625 PRO B 626 0 4.60 CRYST1 159.654 82.580 107.694 90.00 128.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006264 0.000000 0.004908 0.00000 SCALE2 0.000000 0.012109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011797 0.00000