data_5HBW # _entry.id 5HBW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5HBW pdb_00005hbw 10.2210/pdb5hbw/pdb WWPDB D_1000216797 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HBW _pdbx_database_status.recvd_initial_deposition_date 2016-01-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, W.' 1 'Tam, C.P.' 2 'Szostak, J.W.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Cent Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2374-7943 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 916 _citation.page_last 926 _citation.title 'Unusual Base-Pairing Interactions in Monomer-Template Complexes.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acscentsci.6b00278 _citation.pdbx_database_id_PubMed 28058281 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Wang, J.' 3 ? primary 'Szostak, J.W.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5HBW _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.076 _cell.length_a_esd ? _cell.length_b 39.747 _cell.length_b_esd ? _cell.length_c 42.593 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3') ; 2245.440 2 ? ? ? ? 2 non-polymer syn ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; 427.309 2 ? ? ? ? 3 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(TLN)(LCG)UACA' _entity_poly.pdbx_seq_one_letter_code_can NUGUACA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 TLN n 1 3 LCG n 1 4 U n 1 5 A n 1 6 C n 1 7 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5HBW _struct_ref.pdbx_db_accession 5HBW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HBW A 1 ? 7 ? 5HBW 1 ? 7 ? 1 7 2 1 5HBW B 1 ? 7 ? 5HBW 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 PZG 'DNA linking' n ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; ? 'C14 H18 N7 O7 P' 427.309 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HBW _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.51 _exptl_crystal.description needle _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;(+/-)-2-Methyl-2,4-pentanediol, Sodium cacodylate trihydrate, Spermine tetrahydrochloride, Sodium chloride, Potassium chloride, Magnesium chloride hexahydrate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator none _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5HBW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 4036 _reflns.number_obs 4036 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0.05 _reflns.observed_criterion_sigma_I 0.05 _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 24.8 _reflns.pdbx_netI_over_sigmaI 24.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.507 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.01 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.05 _refine.B_iso_max ? _refine.B_iso_mean 33.770 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5HBW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 23.44 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3841 _refine.ls_number_reflns_R_free 195 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.56 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21857 _refine.ls_R_factor_R_free 0.25416 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21696 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1DNS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.162 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.969 _refine.overall_SU_ML 0.104 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 298 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 359 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 23.44 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.037 0.019 394 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.038 0.025 184 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.485 2.234 606 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 4.588 3.336 440 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.166 0.200 70 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.020 0.021 206 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.022 72 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.580 3.547 394 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.575 3.554 395 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.877 5.333 607 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.501 33.694 572 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.496 33.760 573 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.898 _refine_ls_shell.d_res_low 1.947 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_R_work 250 _refine_ls_shell.percent_reflns_obs 96.43 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.291 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5HBW _struct.title 'RNA primer-template complex with 2-methylimidazole-activated monomer analogue' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HBW _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A TLN 2 P ? ? A LCC 1 A TLN 2 1_555 ? ? ? ? ? ? ? 1.643 ? ? covale2 covale both ? A TLN 2 "O3'" ? ? ? 1_555 A LCG 3 P ? ? A TLN 2 A LCG 3 1_555 ? ? ? ? ? ? ? 1.681 ? ? covale3 covale both ? A LCG 3 "O3'" ? ? ? 1_555 A U 4 P ? ? A LCG 3 A U 4 1_555 ? ? ? ? ? ? ? 1.653 ? ? covale4 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B TLN 2 P ? ? B LCC 1 B TLN 2 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale5 covale both ? B TLN 2 "O3'" ? ? ? 1_555 B LCG 3 P ? ? B TLN 2 B LCG 3 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale6 covale both ? B LCG 3 "O3'" ? ? ? 1_555 B U 4 P ? ? B LCG 3 B U 4 1_555 ? ? ? ? ? ? ? 1.580 ? ? hydrog1 hydrog ? ? A TLN 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A TLN 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A TLN 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A TLN 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 3 N1 ? ? ? 1_555 B C 6 N3 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A LCG 3 N2 ? ? ? 1_555 B C 6 O2 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A LCG 3 O6 ? ? ? 1_555 B C 6 N4 ? ? A LCG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 5 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 5 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 B LCG 3 N1 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 B LCG 3 O6 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 B LCG 3 N2 ? ? A C 6 B LCG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 B TLN 2 N3 ? ? A A 7 B TLN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 B TLN 2 O4 ? ? A A 7 B TLN 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PZG 101 ? 8 'binding site for residue PZG A 101' AC2 Software B PZG 101 ? 8 'binding site for residue PZG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LCC A 1 ? LCC A 1 . ? 1_555 ? 2 AC1 8 TLN A 2 ? TLN A 2 . ? 1_555 ? 3 AC1 8 U A 4 ? U A 4 . ? 3_555 ? 4 AC1 8 A A 5 ? A A 5 . ? 3_555 ? 5 AC1 8 C A 6 ? C A 6 . ? 3_555 ? 6 AC1 8 A A 7 ? A A 7 . ? 2_555 ? 7 AC1 8 LCC B 1 ? LCC B 1 . ? 3_655 ? 8 AC1 8 A B 7 ? A B 7 . ? 1_555 ? 9 AC2 8 LCC A 1 ? LCC A 1 . ? 3_645 ? 10 AC2 8 TLN A 2 ? TLN A 2 . ? 3_645 ? 11 AC2 8 C A 6 ? C A 6 . ? 4_545 ? 12 AC2 8 A A 7 ? A A 7 . ? 1_555 ? 13 AC2 8 A A 7 ? A A 7 . ? 4_545 ? 14 AC2 8 LCC B 1 ? LCC B 1 . ? 1_555 ? 15 AC2 8 TLN B 2 ? TLN B 2 . ? 4_445 ? 16 AC2 8 TLN B 2 ? TLN B 2 . ? 1_555 ? # _atom_sites.entry_id 5HBW _atom_sites.fract_transf_matrix[1][1] 0.035618 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025159 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 TLN 2 2 2 TLN LCT A . n A 1 3 LCG 3 3 3 LCG LCG A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 TLN 2 2 2 TLN LCT B . n B 1 3 LCG 3 3 3 LCG LCG B . n B 1 4 U 4 4 4 U U B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 A 7 7 7 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PZG 1 101 2 PZG PZG A . D 2 PZG 1 101 1 PZG PZG B . E 3 HOH 1 201 1 HOH HOH A . E 3 HOH 2 202 2 HOH HOH A . F 3 HOH 1 201 3 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE 15 ? 1 'SSA (A^2)' 3150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-01-18 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A TLN 2 ? ? P A LCG 3 ? ? 1.681 1.607 0.074 0.012 Y 2 1 "O3'" A C 6 ? ? P A A 7 ? ? 1.529 1.607 -0.078 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A LCC 1 ? ? "O3'" A LCC 1 ? ? P A TLN 2 ? ? 127.41 119.70 7.71 1.20 Y 2 1 "O3'" A TLN 2 ? ? P A LCG 3 ? ? "O5'" A LCG 3 ? ? 91.26 104.00 -12.74 1.90 Y 3 1 "C3'" A LCG 3 ? ? "O3'" A LCG 3 ? ? P A U 4 ? ? 127.68 119.70 7.98 1.20 Y 4 1 "C3'" B LCC 1 ? ? "O3'" B LCC 1 ? ? P B TLN 2 ? ? 142.09 119.70 22.39 1.20 Y 5 1 "O3'" B LCC 1 ? ? P B TLN 2 ? ? "O5'" B TLN 2 ? ? 85.04 104.00 -18.96 1.90 Y 6 1 "O3'" B LCC 1 ? ? P B TLN 2 ? ? OP2 B TLN 2 ? ? 117.34 110.50 6.84 1.10 Y 7 1 "O3'" B TLN 2 ? ? P B LCG 3 ? ? "O5'" B LCG 3 ? ? 82.92 104.00 -21.08 1.90 Y 8 1 "O3'" B TLN 2 ? ? P B LCG 3 ? ? OP2 B LCG 3 ? ? 129.04 110.50 18.54 1.10 Y 9 1 "O3'" B LCG 3 ? ? P B U 4 ? ? OP2 B U 4 ? ? 129.20 110.50 18.70 1.10 Y 10 1 "O3'" B LCG 3 ? ? P B U 4 ? ? OP1 B U 4 ? ? 86.60 105.20 -18.60 2.20 Y 11 1 "O5'" B A 7 ? ? P B A 7 ? ? OP2 B A 7 ? ? 99.25 105.70 -6.45 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 HOH O O N N 73 HOH H1 H N N 74 HOH H2 H N N 75 LCC "O5'" O N N 76 LCC "C5'" C N N 77 LCC "C4'" C N R 78 LCC "O4'" O N N 79 LCC "C1'" C N R 80 LCC N1 N N N 81 LCC C6 C N N 82 LCC C5 C N N 83 LCC C5M C N N 84 LCC C4 C N N 85 LCC N4 N N N 86 LCC N3 N N N 87 LCC C2 C N N 88 LCC O2 O N N 89 LCC "C3'" C N S 90 LCC "C2'" C N R 91 LCC "O2'" O N N 92 LCC "O3'" O N N 93 LCC "C6'" C N N 94 LCC P P N N 95 LCC O1P O N N 96 LCC O2P O N N 97 LCC OXT O N N 98 LCC "H5'1" H N N 99 LCC "H5'2" H N N 100 LCC "H1'" H N N 101 LCC H6 H N N 102 LCC H5M1 H N N 103 LCC H5M2 H N N 104 LCC H5M3 H N N 105 LCC H41 H N N 106 LCC H42 H N N 107 LCC "H3'" H N N 108 LCC "H2'1" H N N 109 LCC H3T H N N 110 LCC "H6'1" H N N 111 LCC "H6'2" H N N 112 LCC H1P H N N 113 LCC HXT H N N 114 LCG P P N N 115 LCG OP1 O N N 116 LCG "O5'" O N N 117 LCG "C5'" C N N 118 LCG "C3'" C N S 119 LCG "C6'" C N N 120 LCG N9 N Y N 121 LCG C8 C Y N 122 LCG C4 C Y N 123 LCG N7 N Y N 124 LCG C5 C Y N 125 LCG C6 C N N 126 LCG "C2'" C N R 127 LCG O6 O N N 128 LCG "C4'" C N R 129 LCG "C1'" C N R 130 LCG C2 C N N 131 LCG N1 N N N 132 LCG "O4'" O N N 133 LCG OP2 O N N 134 LCG N2 N N N 135 LCG N3 N N N 136 LCG "O2'" O N N 137 LCG "O3'" O N N 138 LCG OP3 O N N 139 LCG "H5'" H N N 140 LCG "H5''" H N N 141 LCG "H3'" H N N 142 LCG "H6'1" H N N 143 LCG "H6'2" H N N 144 LCG H8 H N N 145 LCG "H2'" H N N 146 LCG "H1'" H N N 147 LCG H1 H N N 148 LCG HOP2 H N N 149 LCG H21 H N N 150 LCG H22 H N N 151 LCG "HO3'" H N N 152 LCG HOP3 H N N 153 PZG O1 O N N 154 PZG C1 C N N 155 PZG N1 N N N 156 PZG C2 C N N 157 PZG N2 N N N 158 PZG N3 N N N 159 PZG C3 C Y N 160 PZG C4 C Y N 161 PZG N4 N Y N 162 PZG C5 C Y N 163 PZG N5 N Y N 164 PZG C6 C N R 165 PZG O2 O N N 166 PZG C7 C N R 167 PZG O3 O N N 168 PZG C8 C N S 169 PZG O4 O N N 170 PZG C9 C N R 171 PZG C10 C N N 172 PZG O5 O N N 173 PZG P1 P N N 174 PZG O6 O N N 175 PZG O7 O N N 176 PZG C11 C Y N 177 PZG C12 C Y N 178 PZG N6 N Y N 179 PZG N7 N Y N 180 PZG C13 C Y N 181 PZG C14 C N N 182 PZG H1 H N N 183 PZG H2 H N N 184 PZG H3 H N N 185 PZG H4 H N N 186 PZG H5 H N N 187 PZG H6 H N N 188 PZG H7 H N N 189 PZG H8 H N N 190 PZG H9 H N N 191 PZG H10 H N N 192 PZG H11 H N N 193 PZG H12 H N N 194 PZG H13 H N N 195 PZG H14 H N N 196 PZG H15 H N N 197 PZG H16 H N N 198 PZG H17 H N N 199 PZG H18 H N N 200 TLN P P N N 201 TLN OP1 O N N 202 TLN OP2 O N N 203 TLN OP3 O N N 204 TLN "O5'" O N N 205 TLN "C5'" C N N 206 TLN "C4'" C N R 207 TLN "O4'" O N N 208 TLN "C1'" C N R 209 TLN N1 N N N 210 TLN C6 C N N 211 TLN C5 C N N 212 TLN C5M C N N 213 TLN C4 C N N 214 TLN O4 O N N 215 TLN N3 N N N 216 TLN C2 C N N 217 TLN O2 O N N 218 TLN "C3'" C N S 219 TLN "C2'" C N R 220 TLN "O2'" O N N 221 TLN "O3'" O N N 222 TLN "C6'" C N N 223 TLN HOP2 H N N 224 TLN HOP3 H N N 225 TLN "H5'" H N N 226 TLN "H5''" H N N 227 TLN "H1'" H N N 228 TLN H6 H N N 229 TLN H71 H N N 230 TLN H72 H N N 231 TLN H73 H N N 232 TLN H3 H N N 233 TLN "H3'" H N N 234 TLN "H2'" H N N 235 TLN "HO3'" H N N 236 TLN "H6'1" H N N 237 TLN "H6'2" H N N 238 U OP3 O N N 239 U P P N N 240 U OP1 O N N 241 U OP2 O N N 242 U "O5'" O N N 243 U "C5'" C N N 244 U "C4'" C N R 245 U "O4'" O N N 246 U "C3'" C N S 247 U "O3'" O N N 248 U "C2'" C N R 249 U "O2'" O N N 250 U "C1'" C N R 251 U N1 N N N 252 U C2 C N N 253 U O2 O N N 254 U N3 N N N 255 U C4 C N N 256 U O4 O N N 257 U C5 C N N 258 U C6 C N N 259 U HOP3 H N N 260 U HOP2 H N N 261 U "H5'" H N N 262 U "H5''" H N N 263 U "H4'" H N N 264 U "H3'" H N N 265 U "HO3'" H N N 266 U "H2'" H N N 267 U "HO2'" H N N 268 U "H1'" H N N 269 U H3 H N N 270 U H5 H N N 271 U H6 H N N 272 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 HOH O H1 sing N N 76 HOH O H2 sing N N 77 LCC "O5'" "C5'" sing N N 78 LCC "O5'" P sing N N 79 LCC "C5'" "C4'" sing N N 80 LCC "C5'" "H5'1" sing N N 81 LCC "C5'" "H5'2" sing N N 82 LCC "C4'" "O4'" sing N N 83 LCC "C4'" "C3'" sing N N 84 LCC "C4'" "C6'" sing N N 85 LCC "O4'" "C1'" sing N N 86 LCC "C1'" N1 sing N N 87 LCC "C1'" "C2'" sing N N 88 LCC "C1'" "H1'" sing N N 89 LCC N1 C6 sing N N 90 LCC N1 C2 sing N N 91 LCC C6 C5 doub N N 92 LCC C6 H6 sing N N 93 LCC C5 C5M sing N N 94 LCC C5 C4 sing N N 95 LCC C5M H5M1 sing N N 96 LCC C5M H5M2 sing N N 97 LCC C5M H5M3 sing N N 98 LCC C4 N4 sing N N 99 LCC C4 N3 doub N N 100 LCC N4 H41 sing N N 101 LCC N4 H42 sing N N 102 LCC N3 C2 sing N N 103 LCC C2 O2 doub N N 104 LCC "C3'" "C2'" sing N N 105 LCC "C3'" "O3'" sing N N 106 LCC "C3'" "H3'" sing N N 107 LCC "C2'" "O2'" sing N N 108 LCC "C2'" "H2'1" sing N N 109 LCC "O2'" "C6'" sing N N 110 LCC "O3'" H3T sing N N 111 LCC "C6'" "H6'1" sing N N 112 LCC "C6'" "H6'2" sing N N 113 LCC P O1P sing N N 114 LCC P O2P doub N N 115 LCC P OXT sing N N 116 LCC O1P H1P sing N N 117 LCC OXT HXT sing N N 118 LCG P OP1 doub N N 119 LCG P "O5'" sing N N 120 LCG P OP2 sing N N 121 LCG P OP3 sing N N 122 LCG "O5'" "C5'" sing N N 123 LCG "C5'" "C4'" sing N N 124 LCG "C5'" "H5'" sing N N 125 LCG "C5'" "H5''" sing N N 126 LCG "C3'" "C2'" sing N N 127 LCG "C3'" "C4'" sing N N 128 LCG "C3'" "O3'" sing N N 129 LCG "C3'" "H3'" sing N N 130 LCG "C6'" "C4'" sing N N 131 LCG "C6'" "O2'" sing N N 132 LCG "C6'" "H6'1" sing N N 133 LCG "C6'" "H6'2" sing N N 134 LCG N9 C8 sing Y N 135 LCG N9 C4 sing Y N 136 LCG N9 "C1'" sing N N 137 LCG C8 N7 doub Y N 138 LCG C8 H8 sing N N 139 LCG C4 C5 doub Y N 140 LCG C4 N3 sing N N 141 LCG N7 C5 sing Y N 142 LCG C5 C6 sing N N 143 LCG C6 O6 doub N N 144 LCG C6 N1 sing N N 145 LCG "C2'" "C1'" sing N N 146 LCG "C2'" "O2'" sing N N 147 LCG "C2'" "H2'" sing N N 148 LCG "C4'" "O4'" sing N N 149 LCG "C1'" "O4'" sing N N 150 LCG "C1'" "H1'" sing N N 151 LCG C2 N1 sing N N 152 LCG C2 N2 sing N N 153 LCG C2 N3 doub N N 154 LCG N1 H1 sing N N 155 LCG OP2 HOP2 sing N N 156 LCG N2 H21 sing N N 157 LCG N2 H22 sing N N 158 LCG "O3'" "HO3'" sing N N 159 LCG OP3 HOP3 sing N N 160 PZG O4 C8 sing N N 161 PZG C8 C9 sing N N 162 PZG C8 C7 sing N N 163 PZG C9 C10 sing N N 164 PZG C9 O2 sing N N 165 PZG C10 O5 sing N N 166 PZG O3 C7 sing N N 167 PZG O6 P1 doub N N 168 PZG C12 N6 sing Y N 169 PZG C12 C11 doub Y N 170 PZG C7 C6 sing N N 171 PZG N6 N7 sing Y N 172 PZG O2 C6 sing N N 173 PZG O5 P1 sing N N 174 PZG C6 N5 sing N N 175 PZG P1 C11 sing N N 176 PZG P1 O7 sing N N 177 PZG C11 C13 sing Y N 178 PZG N7 C13 doub Y N 179 PZG C13 C14 sing N N 180 PZG N5 C3 sing Y N 181 PZG N5 C5 sing Y N 182 PZG N3 C3 sing N N 183 PZG N3 C2 doub N N 184 PZG C3 C4 doub Y N 185 PZG C5 N4 doub Y N 186 PZG N2 C2 sing N N 187 PZG C2 N1 sing N N 188 PZG C4 N4 sing Y N 189 PZG C4 C1 sing N N 190 PZG N1 C1 sing N N 191 PZG C1 O1 doub N N 192 PZG N1 H1 sing N N 193 PZG N2 H2 sing N N 194 PZG N2 H3 sing N N 195 PZG C5 H4 sing N N 196 PZG C6 H5 sing N N 197 PZG C7 H6 sing N N 198 PZG O3 H7 sing N N 199 PZG C8 H8 sing N N 200 PZG O4 H9 sing N N 201 PZG C9 H10 sing N N 202 PZG C10 H11 sing N N 203 PZG C10 H12 sing N N 204 PZG O7 H13 sing N N 205 PZG C12 H14 sing N N 206 PZG N6 H15 sing N N 207 PZG C14 H16 sing N N 208 PZG C14 H17 sing N N 209 PZG C14 H18 sing N N 210 TLN P OP1 doub N N 211 TLN P OP2 sing N N 212 TLN P OP3 sing N N 213 TLN P "O5'" sing N N 214 TLN OP2 HOP2 sing N N 215 TLN OP3 HOP3 sing N N 216 TLN "O5'" "C5'" sing N N 217 TLN "C5'" "C4'" sing N N 218 TLN "C5'" "H5'" sing N N 219 TLN "C5'" "H5''" sing N N 220 TLN "C4'" "O4'" sing N N 221 TLN "C4'" "C3'" sing N N 222 TLN "C4'" "C6'" sing N N 223 TLN "O4'" "C1'" sing N N 224 TLN "C1'" N1 sing N N 225 TLN "C1'" "C2'" sing N N 226 TLN "C1'" "H1'" sing N N 227 TLN N1 C6 sing N N 228 TLN N1 C2 sing N N 229 TLN C6 C5 doub N N 230 TLN C6 H6 sing N N 231 TLN C5 C5M sing N N 232 TLN C5 C4 sing N N 233 TLN C5M H71 sing N N 234 TLN C5M H72 sing N N 235 TLN C5M H73 sing N N 236 TLN C4 O4 doub N N 237 TLN C4 N3 sing N N 238 TLN N3 C2 sing N N 239 TLN N3 H3 sing N N 240 TLN C2 O2 doub N N 241 TLN "C3'" "C2'" sing N N 242 TLN "C3'" "O3'" sing N N 243 TLN "C3'" "H3'" sing N N 244 TLN "C2'" "O2'" sing N N 245 TLN "C2'" "H2'" sing N N 246 TLN "O2'" "C6'" sing N N 247 TLN "O3'" "HO3'" sing N N 248 TLN "C6'" "H6'1" sing N N 249 TLN "C6'" "H6'2" sing N N 250 U OP3 P sing N N 251 U OP3 HOP3 sing N N 252 U P OP1 doub N N 253 U P OP2 sing N N 254 U P "O5'" sing N N 255 U OP2 HOP2 sing N N 256 U "O5'" "C5'" sing N N 257 U "C5'" "C4'" sing N N 258 U "C5'" "H5'" sing N N 259 U "C5'" "H5''" sing N N 260 U "C4'" "O4'" sing N N 261 U "C4'" "C3'" sing N N 262 U "C4'" "H4'" sing N N 263 U "O4'" "C1'" sing N N 264 U "C3'" "O3'" sing N N 265 U "C3'" "C2'" sing N N 266 U "C3'" "H3'" sing N N 267 U "O3'" "HO3'" sing N N 268 U "C2'" "O2'" sing N N 269 U "C2'" "C1'" sing N N 270 U "C2'" "H2'" sing N N 271 U "O2'" "HO2'" sing N N 272 U "C1'" N1 sing N N 273 U "C1'" "H1'" sing N N 274 U N1 C2 sing N N 275 U N1 C6 sing N N 276 U C2 O2 doub N N 277 U C2 N3 sing N N 278 U N3 C4 sing N N 279 U N3 H3 sing N N 280 U C4 O4 doub N N 281 U C4 C5 sing N N 282 U C5 C6 doub N N 283 U C5 H5 sing N N 284 U C6 H6 sing N N 285 # _ndb_struct_conf_na.entry_id 5HBW _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A TLN 2 1_555 B A 7 1_555 -0.079 -0.065 0.143 -2.521 -10.003 3.393 1 A_TLN2:A7_B A 2 ? B 7 ? 20 1 1 A LCG 3 1_555 B C 6 1_555 -0.411 -0.131 -0.032 -4.333 -16.933 0.480 2 A_LCG3:C6_B A 3 ? B 6 ? 19 1 1 A U 4 1_555 B A 5 1_555 0.084 -0.155 0.224 -4.909 -16.471 -0.481 3 A_U4:A5_B A 4 ? B 5 ? 20 1 1 A A 5 1_555 B U 4 1_555 0.013 -0.154 -0.015 1.198 -10.587 0.973 4 A_A5:U4_B A 5 ? B 4 ? 20 1 1 A C 6 1_555 B LCG 3 1_555 0.413 -0.269 -0.075 7.750 -16.725 -2.129 5 A_C6:LCG3_B A 6 ? B 3 ? 19 1 1 A A 7 1_555 B TLN 2 1_555 0.045 0.009 -0.046 4.373 -13.206 1.929 6 A_A7:TLN2_B A 7 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A TLN 2 1_555 B A 7 1_555 A LCG 3 1_555 B C 6 1_555 -0.223 -1.871 3.221 0.271 8.970 27.102 -5.630 0.507 2.484 18.509 -0.560 28.523 1 AA_TLN2LCG3:C6A7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A LCG 3 1_555 B C 6 1_555 A U 4 1_555 B A 5 1_555 -0.322 -1.438 3.259 -3.361 5.140 34.347 -3.156 0.043 3.036 8.619 5.636 34.876 2 AA_LCG3U4:A5C6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A U 4 1_555 B A 5 1_555 A A 5 1_555 B U 4 1_555 -0.231 -1.250 3.040 0.657 6.576 31.866 -3.256 0.515 2.729 11.819 -1.181 32.527 3 AA_U4A5:U4A5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A A 5 1_555 B U 4 1_555 A C 6 1_555 B LCG 3 1_555 -0.136 -0.931 3.087 0.660 8.112 33.142 -2.761 0.327 2.785 13.961 -1.135 34.100 4 AA_A5C6:LCG3U4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A C 6 1_555 B LCG 3 1_555 A A 7 1_555 B TLN 2 1_555 -0.091 -1.530 3.311 -0.440 14.636 28.272 -5.223 0.094 2.265 27.735 0.834 31.770 5 AA_C6A7:TLN2LCG3_BB A 6 ? B 3 ? A 7 ? B 2 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; PZG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DNS _pdbx_initial_refinement_model.details ? #