data_5HBX # _entry.id 5HBX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5HBX pdb_00005hbx 10.2210/pdb5hbx/pdb WWPDB D_1000216803 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5HBW PDB . unspecified 5HBY PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HBX _pdbx_database_status.recvd_initial_deposition_date 2016-01-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Tam, C.P.' 2 ? 'Szostak, J.W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Cent Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2374-7943 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 916 _citation.page_last 926 _citation.title 'Unusual Base-Pairing Interactions in Monomer-Template Complexes.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acscentsci.6b00278 _citation.pdbx_database_id_PubMed 28058281 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Wang, J.' 3 ? primary 'Szostak, J.W.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5HBX _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.545 _cell.length_a_esd ? _cell.length_b 43.545 _cell.length_b_esd ? _cell.length_c 83.996 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') ; 4483.762 4 ? ? ? ? 2 non-polymer syn ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; 427.309 8 ? ? ? ? 3 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCA)(LCG)ACUUAAGUCU' _entity_poly.pdbx_seq_one_letter_code_can NNAGACUUAAGUCU _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCA n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5HBX _struct_ref.pdbx_db_accession 5HBX _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HBX A 1 ? 14 ? 5HBX 1 ? 14 ? 1 14 2 1 5HBX B 1 ? 14 ? 5HBX 1 ? 14 ? 1 14 3 1 5HBX C 1 ? 14 ? 5HBX 1 ? 14 ? 1 14 4 1 5HBX D 1 ? 14 ? 5HBX 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCA 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(ADENIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O7 P' 359.232 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 PZG 'DNA linking' n ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; ? 'C14 H18 N7 O7 P' 427.309 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HBX _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.02 _exptl_crystal.description 'a diamond shape crystal' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Ammonium acetate, Magnesium chloride hexahydrate,0.05 M TRIS hydrochloride pH 7.5,10% v/v (+/-)-2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range 7.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator none _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5HBX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 19566 _reflns.number_obs 19566 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0.05 _reflns.observed_criterion_sigma_I 0.05 _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.4 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 14.6 _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.64 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.488 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.00 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.00 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] 0.01 _refine.B_iso_max ? _refine.B_iso_mean 29.324 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5HBX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18463 _refine.ls_number_reflns_R_free 1103 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.82 _refine.ls_percent_reflns_R_free 5.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21478 _refine.ls_R_factor_R_free 0.24899 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21292 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.05 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5DHC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.567 _refine.overall_SU_ML 0.083 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1188 _refine_hist.pdbx_number_atoms_ligand 232 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1511 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.026 0.018 1576 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.041 0.024 708 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.770 2.030 2432 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.869 3.269 1700 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.122 0.200 272 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.018 0.021 816 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.022 296 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.730 3.030 1576 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.729 3.035 1577 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.728 4.529 2433 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 8.675 28.276 2244 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 8.695 28.303 2231 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.702 _refine_ls_shell.d_res_low 1.746 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.number_reflns_R_work 1361 _refine_ls_shell.percent_reflns_obs 99.19 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.223 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.223 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5HBX _struct.title 'RNA primer-template complex with 2-methylimidazole-activated monomer analogue-2 binding sites' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HBX _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.690 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCA 3 P ? ? A LCC 2 A LCA 3 1_555 ? ? ? ? ? ? ? 1.666 ? ? covale3 covale one ? A LCA 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCA 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.671 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.696 ? ? covale5 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.671 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCA 3 P ? ? B LCC 2 B LCA 3 1_555 ? ? ? ? ? ? ? 1.679 ? ? covale7 covale one ? B LCA 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCA 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.672 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale9 covale both ? C LCC 1 "O3'" ? ? ? 1_555 C LCC 2 P ? ? C LCC 1 C LCC 2 1_555 ? ? ? ? ? ? ? 1.655 ? ? covale10 covale both ? C LCC 2 "O3'" ? ? ? 1_555 C LCA 3 P ? ? C LCC 2 C LCA 3 1_555 ? ? ? ? ? ? ? 1.697 ? ? covale11 covale one ? C LCA 3 "O3'" ? ? ? 1_555 C LCG 4 P ? ? C LCA 3 C LCG 4 1_555 ? ? ? ? ? ? ? 1.653 ? ? covale12 covale both ? C LCG 4 "O3'" ? ? ? 1_555 C A 5 P ? ? C LCG 4 C A 5 1_555 ? ? ? ? ? ? ? 1.665 ? ? covale13 covale both ? D LCC 1 "O3'" ? ? ? 1_555 D LCC 2 P ? ? D LCC 1 D LCC 2 1_555 ? ? ? ? ? ? ? 1.699 ? ? covale14 covale both ? D LCC 2 "O3'" ? ? ? 1_555 D LCA 3 P ? ? D LCC 2 D LCA 3 1_555 ? ? ? ? ? ? ? 1.674 ? ? covale15 covale one ? D LCA 3 "O3'" ? ? ? 1_555 D LCG 4 P ? ? D LCA 3 D LCG 4 1_555 ? ? ? ? ? ? ? 1.707 ? ? covale16 covale both ? D LCG 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D LCG 4 D A 5 1_555 ? ? ? ? ? ? ? 1.645 ? ? hydrog1 hydrog ? ? A LCA 3 N1 ? ? ? 1_555 B U 14 N3 ? ? A LCA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCA 3 N6 ? ? ? 1_555 B U 14 O4 ? ? A LCA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 14 N3 ? ? ? 1_555 B LCA 3 N1 ? ? A U 14 B LCA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 O4 ? ? ? 1_555 B LCA 3 N6 ? ? A U 14 B LCA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C LCA 3 N1 ? ? ? 1_555 D U 14 N3 ? ? C LCA 3 D U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C LCA 3 N6 ? ? ? 1_555 D U 14 O4 ? ? C LCA 3 D U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C LCG 4 N1 ? ? ? 1_555 D C 13 N3 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C LCG 4 N2 ? ? ? 1_555 D C 13 O2 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C LCG 4 O6 ? ? ? 1_555 D C 13 N4 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C U 7 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C U 7 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C A 9 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C A 9 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C A 10 N1 ? ? ? 1_555 D U 7 N3 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C A 10 N6 ? ? ? 1_555 D U 7 O4 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 13 N3 ? ? ? 1_555 D LCG 4 N1 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 13 N4 ? ? ? 1_555 D LCG 4 O6 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 13 O2 ? ? ? 1_555 D LCG 4 N2 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C U 14 N3 ? ? ? 1_555 D LCA 3 N1 ? ? C U 14 D LCA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C U 14 O4 ? ? ? 1_555 D LCA 3 N6 ? ? C U 14 D LCA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PZG 101 ? 7 'binding site for residue PZG A 101' AC2 Software A PZG 102 ? 8 'binding site for residue PZG A 102' AC3 Software B PZG 101 ? 7 'binding site for residue PZG B 101' AC4 Software B PZG 102 ? 8 'binding site for residue PZG B 102' AC5 Software C PZG 101 ? 7 'binding site for residue PZG C 101' AC6 Software C PZG 102 ? 9 'binding site for residue PZG C 102' AC7 Software D PZG 101 ? 7 'binding site for residue PZG D 101' AC8 Software D PZG 102 ? 8 'binding site for residue PZG D 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LCC A 2 ? LCC A 2 . ? 1_555 ? 2 AC1 7 LCA A 3 ? LCA A 3 . ? 1_555 ? 3 AC1 7 PZG F . ? PZG A 102 . ? 1_555 ? 4 AC1 7 PZG F . ? PZG A 102 . ? 3_575 ? 5 AC1 7 U B 14 ? U B 14 . ? 1_555 ? 6 AC1 7 U B 14 ? U B 14 . ? 2_775 ? 7 AC1 7 LCC C 1 ? LCC C 1 . ? 3_674 ? 8 AC2 8 LCC A 1 ? LCC A 1 . ? 1_555 ? 9 AC2 8 LCC A 2 ? LCC A 2 . ? 1_555 ? 10 AC2 8 PZG E . ? PZG A 101 . ? 2_775 ? 11 AC2 8 PZG E . ? PZG A 101 . ? 1_555 ? 12 AC2 8 HOH M . ? HOH A 201 . ? 1_555 ? 13 AC2 8 U B 14 ? U B 14 . ? 1_555 ? 14 AC2 8 U B 14 ? U B 14 . ? 2_775 ? 15 AC2 8 LCC C 1 ? LCC C 1 . ? 1_564 ? 16 AC3 7 U A 14 ? U A 14 . ? 3_575 ? 17 AC3 7 U A 14 ? U A 14 . ? 1_555 ? 18 AC3 7 LCC B 2 ? LCC B 2 . ? 1_555 ? 19 AC3 7 LCA B 3 ? LCA B 3 . ? 1_555 ? 20 AC3 7 PZG H . ? PZG B 102 . ? 2_775 ? 21 AC3 7 PZG H . ? PZG B 102 . ? 1_555 ? 22 AC3 7 C C 13 ? C C 13 . ? 1_565 ? 23 AC4 8 U A 14 ? U A 14 . ? 3_575 ? 24 AC4 8 LCC B 1 ? LCC B 1 . ? 1_555 ? 25 AC4 8 LCC B 2 ? LCC B 2 . ? 1_555 ? 26 AC4 8 PZG G . ? PZG B 101 . ? 1_555 ? 27 AC4 8 PZG G . ? PZG B 101 . ? 3_575 ? 28 AC4 8 U C 12 ? U C 12 . ? 1_565 ? 29 AC4 8 C C 13 ? C C 13 . ? 1_565 ? 30 AC4 8 LCC D 1 ? LCC D 1 . ? 2_565 ? 31 AC5 7 LCC A 1 ? LCC A 1 . ? 2_656 ? 32 AC5 7 LCC C 2 ? LCC C 2 . ? 1_555 ? 33 AC5 7 LCA C 3 ? LCA C 3 . ? 1_555 ? 34 AC5 7 PZG J . ? PZG C 102 . ? 2_545 ? 35 AC5 7 PZG J . ? PZG C 102 . ? 1_555 ? 36 AC5 7 U D 14 ? U D 14 . ? 1_555 ? 37 AC5 7 U D 14 ? U D 14 . ? 3_655 ? 38 AC6 9 LCC A 1 ? LCC A 1 . ? 1_546 ? 39 AC6 9 LCC C 1 ? LCC C 1 . ? 1_555 ? 40 AC6 9 LCC C 2 ? LCC C 2 . ? 1_555 ? 41 AC6 9 PZG I . ? PZG C 101 . ? 1_555 ? 42 AC6 9 PZG I . ? PZG C 101 . ? 3_655 ? 43 AC6 9 HOH O . ? HOH C 202 . ? 1_555 ? 44 AC6 9 C D 13 ? C D 13 . ? 1_555 ? 45 AC6 9 U D 14 ? U D 14 . ? 1_555 ? 46 AC6 9 U D 14 ? U D 14 . ? 3_655 ? 47 AC7 7 C A 13 ? C A 13 . ? 1_545 ? 48 AC7 7 U C 14 ? U C 14 . ? 2_545 ? 49 AC7 7 U C 14 ? U C 14 . ? 1_555 ? 50 AC7 7 LCC D 2 ? LCC D 2 . ? 1_555 ? 51 AC7 7 LCA D 3 ? LCA D 3 . ? 1_555 ? 52 AC7 7 PZG L . ? PZG D 102 . ? 3_655 ? 53 AC7 7 PZG L . ? PZG D 102 . ? 1_555 ? 54 AC8 8 U A 12 ? U A 12 . ? 1_545 ? 55 AC8 8 C A 13 ? C A 13 . ? 1_545 ? 56 AC8 8 LCC B 1 ? LCC B 1 . ? 3_455 ? 57 AC8 8 U C 14 ? U C 14 . ? 2_545 ? 58 AC8 8 LCC D 1 ? LCC D 1 . ? 1_555 ? 59 AC8 8 LCC D 2 ? LCC D 2 . ? 1_555 ? 60 AC8 8 PZG K . ? PZG D 101 . ? 2_545 ? 61 AC8 8 PZG K . ? PZG D 101 . ? 1_555 ? # _atom_sites.entry_id 5HBX _atom_sites.fract_transf_matrix[1][1] 0.022965 _atom_sites.fract_transf_matrix[1][2] 0.013259 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026517 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011905 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCA 3 3 3 LCA LCA A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCA 3 3 3 LCA LCA B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n C 1 1 LCC 1 1 1 LCC LCC C . n C 1 2 LCC 2 2 2 LCC LCC C . n C 1 3 LCA 3 3 3 LCA LCA C . n C 1 4 LCG 4 4 4 LCG LCG C . n C 1 5 A 5 5 5 A A C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 U 14 14 14 U U C . n D 1 1 LCC 1 1 1 LCC LCC D . n D 1 2 LCC 2 2 2 LCC LCC D . n D 1 3 LCA 3 3 3 LCA LCA D . n D 1 4 LCG 4 4 4 LCG LCG D . n D 1 5 A 5 5 5 A A D . n D 1 6 C 6 6 6 C C D . n D 1 7 U 7 7 7 U U D . n D 1 8 U 8 8 8 U U D . n D 1 9 A 9 9 9 A A D . n D 1 10 A 10 10 10 A A D . n D 1 11 G 11 11 11 G G D . n D 1 12 U 12 12 12 U U D . n D 1 13 C 13 13 13 C C D . n D 1 14 U 14 14 14 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PZG 1 101 3 PZG PZG A . F 2 PZG 1 102 4 PZG PZG A . G 2 PZG 1 101 1 PZG PZG B . H 2 PZG 1 102 2 PZG PZG B . I 2 PZG 1 101 7 PZG PZG C . J 2 PZG 1 102 8 PZG PZG C . K 2 PZG 1 101 5 PZG PZG D . L 2 PZG 1 102 6 PZG PZG D . M 3 HOH 1 201 1 HOH HOH A . M 3 HOH 2 202 54 HOH HOH A . M 3 HOH 3 203 13 HOH HOH A . M 3 HOH 4 204 62 HOH HOH A . M 3 HOH 5 205 64 HOH HOH A . M 3 HOH 6 206 61 HOH HOH A . M 3 HOH 7 207 3 HOH HOH A . M 3 HOH 8 208 55 HOH HOH A . M 3 HOH 9 209 12 HOH HOH A . M 3 HOH 10 210 63 HOH HOH A . M 3 HOH 11 211 9 HOH HOH A . M 3 HOH 12 212 8 HOH HOH A . M 3 HOH 13 213 14 HOH HOH A . M 3 HOH 14 214 2 HOH HOH A . M 3 HOH 15 215 4 HOH HOH A . M 3 HOH 16 216 60 HOH HOH A . M 3 HOH 17 217 5 HOH HOH A . M 3 HOH 18 218 67 HOH HOH A . M 3 HOH 19 219 66 HOH HOH A . M 3 HOH 20 220 10 HOH HOH A . M 3 HOH 21 221 89 HOH HOH A . N 3 HOH 1 201 68 HOH HOH B . N 3 HOH 2 202 65 HOH HOH B . N 3 HOH 3 203 56 HOH HOH B . N 3 HOH 4 204 22 HOH HOH B . N 3 HOH 5 205 23 HOH HOH B . N 3 HOH 6 206 57 HOH HOH B . N 3 HOH 7 207 6 HOH HOH B . N 3 HOH 8 208 7 HOH HOH B . N 3 HOH 9 209 24 HOH HOH B . N 3 HOH 10 210 16 HOH HOH B . N 3 HOH 11 211 90 HOH HOH B . N 3 HOH 12 212 15 HOH HOH B . N 3 HOH 13 213 17 HOH HOH B . N 3 HOH 14 214 25 HOH HOH B . N 3 HOH 15 215 18 HOH HOH B . N 3 HOH 16 216 92 HOH HOH B . N 3 HOH 17 217 58 HOH HOH B . N 3 HOH 18 218 21 HOH HOH B . N 3 HOH 19 219 11 HOH HOH B . N 3 HOH 20 220 20 HOH HOH B . N 3 HOH 21 221 69 HOH HOH B . N 3 HOH 22 222 91 HOH HOH B . N 3 HOH 23 223 70 HOH HOH B . N 3 HOH 24 224 19 HOH HOH B . O 3 HOH 1 201 81 HOH HOH C . O 3 HOH 2 202 26 HOH HOH C . O 3 HOH 3 203 79 HOH HOH C . O 3 HOH 4 204 71 HOH HOH C . O 3 HOH 5 205 36 HOH HOH C . O 3 HOH 6 206 44 HOH HOH C . O 3 HOH 7 207 76 HOH HOH C . O 3 HOH 8 208 73 HOH HOH C . O 3 HOH 9 209 29 HOH HOH C . O 3 HOH 10 210 82 HOH HOH C . O 3 HOH 11 211 72 HOH HOH C . O 3 HOH 12 212 27 HOH HOH C . O 3 HOH 13 213 78 HOH HOH C . O 3 HOH 14 214 35 HOH HOH C . O 3 HOH 15 215 28 HOH HOH C . O 3 HOH 16 216 37 HOH HOH C . O 3 HOH 17 217 33 HOH HOH C . O 3 HOH 18 218 34 HOH HOH C . O 3 HOH 19 219 39 HOH HOH C . O 3 HOH 20 220 32 HOH HOH C . O 3 HOH 21 221 31 HOH HOH C . O 3 HOH 22 222 43 HOH HOH C . O 3 HOH 23 223 30 HOH HOH C . O 3 HOH 24 224 74 HOH HOH C . P 3 HOH 1 201 83 HOH HOH D . P 3 HOH 2 202 52 HOH HOH D . P 3 HOH 3 203 84 HOH HOH D . P 3 HOH 4 204 50 HOH HOH D . P 3 HOH 5 205 53 HOH HOH D . P 3 HOH 6 206 88 HOH HOH D . P 3 HOH 7 207 47 HOH HOH D . P 3 HOH 8 208 48 HOH HOH D . P 3 HOH 9 209 87 HOH HOH D . P 3 HOH 10 210 41 HOH HOH D . P 3 HOH 11 211 49 HOH HOH D . P 3 HOH 12 212 85 HOH HOH D . P 3 HOH 13 213 45 HOH HOH D . P 3 HOH 14 214 75 HOH HOH D . P 3 HOH 15 215 51 HOH HOH D . P 3 HOH 16 216 40 HOH HOH D . P 3 HOH 17 217 42 HOH HOH D . P 3 HOH 18 218 77 HOH HOH D . P 3 HOH 19 219 80 HOH HOH D . P 3 HOH 20 220 46 HOH HOH D . P 3 HOH 21 221 38 HOH HOH D . P 3 HOH 22 222 86 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,M,N 2 1 C,D,I,J,K,L,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2690 ? 1 MORE 4 ? 1 'SSA (A^2)' 5910 ? 2 'ABSA (A^2)' 2710 ? 2 MORE 4 ? 2 'SSA (A^2)' 5910 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 203 ? M HOH . 2 1 A HOH 213 ? M HOH . 3 1 A HOH 220 ? M HOH . 4 1 A HOH 221 ? M HOH . 5 1 B HOH 204 ? N HOH . 6 1 B HOH 205 ? N HOH . 7 1 B HOH 222 ? N HOH . 8 1 C HOH 205 ? O HOH . 9 1 C HOH 216 ? O HOH . 10 1 C HOH 223 ? O HOH . 11 1 D HOH 204 ? P HOH . 12 1 D HOH 211 ? P HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-01-18 3 'Structure model' 1 2 2017-09-27 4 'Structure model' 1 3 2019-11-20 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_audit_support 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 220 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 224 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_775 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? 1.690 1.607 0.083 0.012 Y 2 1 "O3'" A LCG 4 ? ? P A A 5 ? ? 1.696 1.607 0.089 0.012 Y 3 1 "O3'" B LCC 2 ? ? P B LCA 3 ? ? 1.679 1.607 0.072 0.012 Y 4 1 "O3'" C LCC 2 ? ? P C LCA 3 ? ? 1.697 1.607 0.090 0.012 Y 5 1 "O3'" D LCC 1 ? ? P D LCC 2 ? ? 1.699 1.607 0.092 0.012 Y 6 1 "O3'" D LCA 3 ? ? P D LCG 4 ? ? 1.707 1.607 0.100 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A LCC 1 ? ? "O3'" A LCC 1 ? ? P A LCC 2 ? ? 127.99 119.70 8.29 1.20 Y 2 1 "C3'" A LCA 3 ? ? "O3'" A LCA 3 ? ? P A LCG 4 ? ? 127.44 119.70 7.74 1.20 Y 3 1 "O3'" A LCG 4 ? ? P A A 5 ? ? OP2 A A 5 ? ? 119.56 110.50 9.06 1.10 Y 4 1 "C3'" B LCA 3 ? ? "O3'" B LCA 3 ? ? P B LCG 4 ? ? 129.28 119.70 9.58 1.20 Y 5 1 "C3'" B LCG 4 ? ? "O3'" B LCG 4 ? ? P B A 5 ? ? 127.41 119.70 7.71 1.20 Y 6 1 "O5'" B A 10 ? ? P B A 10 ? ? OP2 B A 10 ? ? 100.21 105.70 -5.49 0.90 N 7 1 "O5'" B G 11 ? ? P B G 11 ? ? OP2 B G 11 ? ? 98.93 105.70 -6.77 0.90 N 8 1 "C3'" C LCA 3 ? ? "O3'" C LCA 3 ? ? P C LCG 4 ? ? 127.47 119.70 7.77 1.20 Y 9 1 "O5'" D G 11 ? ? P D G 11 ? ? OP2 D G 11 ? ? 97.11 105.70 -8.59 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LCA P P N N 114 LCA O1P O N N 115 LCA "O5'" O N N 116 LCA "C5'" C N N 117 LCA "C3'" C N S 118 LCA "C6'" C N N 119 LCA N9 N Y N 120 LCA C8 C Y N 121 LCA C4 C Y N 122 LCA N7 N Y N 123 LCA C5 C Y N 124 LCA C6 C Y N 125 LCA "C2'" C N R 126 LCA N6 N N N 127 LCA "C4'" C N R 128 LCA "C1'" C N R 129 LCA C2 C Y N 130 LCA N1 N Y N 131 LCA "O4'" O N N 132 LCA O2P O N N 133 LCA N3 N Y N 134 LCA "O3'" O N N 135 LCA OXT O N N 136 LCA "O2'" O N N 137 LCA H1P H N N 138 LCA "H5'1" H N N 139 LCA "H5'2" H N N 140 LCA "H3'" H N N 141 LCA "H6'1" H N N 142 LCA "H6'2" H N N 143 LCA H8 H N N 144 LCA "H2'1" H N N 145 LCA H61 H N N 146 LCA H62 H N N 147 LCA "H1'" H N N 148 LCA H2 H N N 149 LCA HB H N N 150 LCA HA H N N 151 LCC "O5'" O N N 152 LCC "C5'" C N N 153 LCC "C4'" C N R 154 LCC "O4'" O N N 155 LCC "C1'" C N R 156 LCC N1 N N N 157 LCC C6 C N N 158 LCC C5 C N N 159 LCC C5M C N N 160 LCC C4 C N N 161 LCC N4 N N N 162 LCC N3 N N N 163 LCC C2 C N N 164 LCC O2 O N N 165 LCC "C3'" C N S 166 LCC "C2'" C N R 167 LCC "O2'" O N N 168 LCC "O3'" O N N 169 LCC "C6'" C N N 170 LCC P P N N 171 LCC O1P O N N 172 LCC O2P O N N 173 LCC OXT O N N 174 LCC "H5'1" H N N 175 LCC "H5'2" H N N 176 LCC "H1'" H N N 177 LCC H6 H N N 178 LCC H5M1 H N N 179 LCC H5M2 H N N 180 LCC H5M3 H N N 181 LCC H41 H N N 182 LCC H42 H N N 183 LCC "H3'" H N N 184 LCC "H2'1" H N N 185 LCC H3T H N N 186 LCC "H6'1" H N N 187 LCC "H6'2" H N N 188 LCC H1P H N N 189 LCC HXT H N N 190 LCG P P N N 191 LCG OP1 O N N 192 LCG "O5'" O N N 193 LCG "C5'" C N N 194 LCG "C3'" C N S 195 LCG "C6'" C N N 196 LCG N9 N Y N 197 LCG C8 C Y N 198 LCG C4 C Y N 199 LCG N7 N Y N 200 LCG C5 C Y N 201 LCG C6 C N N 202 LCG "C2'" C N R 203 LCG O6 O N N 204 LCG "C4'" C N R 205 LCG "C1'" C N R 206 LCG C2 C N N 207 LCG N1 N N N 208 LCG "O4'" O N N 209 LCG OP2 O N N 210 LCG N2 N N N 211 LCG N3 N N N 212 LCG "O2'" O N N 213 LCG "O3'" O N N 214 LCG OP3 O N N 215 LCG "H5'" H N N 216 LCG "H5''" H N N 217 LCG "H3'" H N N 218 LCG "H6'1" H N N 219 LCG "H6'2" H N N 220 LCG H8 H N N 221 LCG "H2'" H N N 222 LCG "H1'" H N N 223 LCG H1 H N N 224 LCG HOP2 H N N 225 LCG H21 H N N 226 LCG H22 H N N 227 LCG "HO3'" H N N 228 LCG HOP3 H N N 229 PZG O1 O N N 230 PZG C1 C N N 231 PZG N1 N N N 232 PZG C2 C N N 233 PZG N2 N N N 234 PZG N3 N N N 235 PZG C3 C Y N 236 PZG C4 C Y N 237 PZG N4 N Y N 238 PZG C5 C Y N 239 PZG N5 N Y N 240 PZG C6 C N R 241 PZG O2 O N N 242 PZG C7 C N R 243 PZG O3 O N N 244 PZG C8 C N S 245 PZG O4 O N N 246 PZG C9 C N R 247 PZG C10 C N N 248 PZG O5 O N N 249 PZG P1 P N N 250 PZG O6 O N N 251 PZG O7 O N N 252 PZG C11 C Y N 253 PZG C12 C Y N 254 PZG N6 N Y N 255 PZG N7 N Y N 256 PZG C13 C Y N 257 PZG C14 C N N 258 PZG H1 H N N 259 PZG H2 H N N 260 PZG H3 H N N 261 PZG H4 H N N 262 PZG H5 H N N 263 PZG H6 H N N 264 PZG H7 H N N 265 PZG H8 H N N 266 PZG H9 H N N 267 PZG H10 H N N 268 PZG H11 H N N 269 PZG H12 H N N 270 PZG H13 H N N 271 PZG H14 H N N 272 PZG H15 H N N 273 PZG H16 H N N 274 PZG H17 H N N 275 PZG H18 H N N 276 U OP3 O N N 277 U P P N N 278 U OP1 O N N 279 U OP2 O N N 280 U "O5'" O N N 281 U "C5'" C N N 282 U "C4'" C N R 283 U "O4'" O N N 284 U "C3'" C N S 285 U "O3'" O N N 286 U "C2'" C N R 287 U "O2'" O N N 288 U "C1'" C N R 289 U N1 N N N 290 U C2 C N N 291 U O2 O N N 292 U N3 N N N 293 U C4 C N N 294 U O4 O N N 295 U C5 C N N 296 U C6 C N N 297 U HOP3 H N N 298 U HOP2 H N N 299 U "H5'" H N N 300 U "H5''" H N N 301 U "H4'" H N N 302 U "H3'" H N N 303 U "HO3'" H N N 304 U "H2'" H N N 305 U "HO2'" H N N 306 U "H1'" H N N 307 U H3 H N N 308 U H5 H N N 309 U H6 H N N 310 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LCA P O1P sing N N 118 LCA P "O5'" sing N N 119 LCA P O2P doub N N 120 LCA P OXT sing N N 121 LCA O1P H1P sing N N 122 LCA "O5'" "C5'" sing N N 123 LCA "C5'" "C4'" sing N N 124 LCA "C5'" "H5'1" sing N N 125 LCA "C5'" "H5'2" sing N N 126 LCA "C3'" "C2'" sing N N 127 LCA "C3'" "C4'" sing N N 128 LCA "C3'" "O3'" sing N N 129 LCA "C3'" "H3'" sing N N 130 LCA "C6'" "C4'" sing N N 131 LCA "C6'" "O2'" sing N N 132 LCA "C6'" "H6'1" sing N N 133 LCA "C6'" "H6'2" sing N N 134 LCA N9 C8 sing Y N 135 LCA N9 C4 sing Y N 136 LCA N9 "C1'" sing N N 137 LCA C8 N7 doub Y N 138 LCA C8 H8 sing N N 139 LCA C4 C5 doub Y N 140 LCA C4 N3 sing Y N 141 LCA N7 C5 sing Y N 142 LCA C5 C6 sing Y N 143 LCA C6 N6 sing N N 144 LCA C6 N1 doub Y N 145 LCA "C2'" "C1'" sing N N 146 LCA "C2'" "O2'" sing N N 147 LCA "C2'" "H2'1" sing N N 148 LCA N6 H61 sing N N 149 LCA N6 H62 sing N N 150 LCA "C4'" "O4'" sing N N 151 LCA "C1'" "O4'" sing N N 152 LCA "C1'" "H1'" sing N N 153 LCA C2 N1 sing Y N 154 LCA C2 N3 doub Y N 155 LCA C2 H2 sing N N 156 LCA "O3'" HB sing N N 157 LCA OXT HA sing N N 158 LCC "O5'" "C5'" sing N N 159 LCC "O5'" P sing N N 160 LCC "C5'" "C4'" sing N N 161 LCC "C5'" "H5'1" sing N N 162 LCC "C5'" "H5'2" sing N N 163 LCC "C4'" "O4'" sing N N 164 LCC "C4'" "C3'" sing N N 165 LCC "C4'" "C6'" sing N N 166 LCC "O4'" "C1'" sing N N 167 LCC "C1'" N1 sing N N 168 LCC "C1'" "C2'" sing N N 169 LCC "C1'" "H1'" sing N N 170 LCC N1 C6 sing N N 171 LCC N1 C2 sing N N 172 LCC C6 C5 doub N N 173 LCC C6 H6 sing N N 174 LCC C5 C5M sing N N 175 LCC C5 C4 sing N N 176 LCC C5M H5M1 sing N N 177 LCC C5M H5M2 sing N N 178 LCC C5M H5M3 sing N N 179 LCC C4 N4 sing N N 180 LCC C4 N3 doub N N 181 LCC N4 H41 sing N N 182 LCC N4 H42 sing N N 183 LCC N3 C2 sing N N 184 LCC C2 O2 doub N N 185 LCC "C3'" "C2'" sing N N 186 LCC "C3'" "O3'" sing N N 187 LCC "C3'" "H3'" sing N N 188 LCC "C2'" "O2'" sing N N 189 LCC "C2'" "H2'1" sing N N 190 LCC "O2'" "C6'" sing N N 191 LCC "O3'" H3T sing N N 192 LCC "C6'" "H6'1" sing N N 193 LCC "C6'" "H6'2" sing N N 194 LCC P O1P sing N N 195 LCC P O2P doub N N 196 LCC P OXT sing N N 197 LCC O1P H1P sing N N 198 LCC OXT HXT sing N N 199 LCG P OP1 doub N N 200 LCG P "O5'" sing N N 201 LCG P OP2 sing N N 202 LCG P OP3 sing N N 203 LCG "O5'" "C5'" sing N N 204 LCG "C5'" "C4'" sing N N 205 LCG "C5'" "H5'" sing N N 206 LCG "C5'" "H5''" sing N N 207 LCG "C3'" "C2'" sing N N 208 LCG "C3'" "C4'" sing N N 209 LCG "C3'" "O3'" sing N N 210 LCG "C3'" "H3'" sing N N 211 LCG "C6'" "C4'" sing N N 212 LCG "C6'" "O2'" sing N N 213 LCG "C6'" "H6'1" sing N N 214 LCG "C6'" "H6'2" sing N N 215 LCG N9 C8 sing Y N 216 LCG N9 C4 sing Y N 217 LCG N9 "C1'" sing N N 218 LCG C8 N7 doub Y N 219 LCG C8 H8 sing N N 220 LCG C4 C5 doub Y N 221 LCG C4 N3 sing N N 222 LCG N7 C5 sing Y N 223 LCG C5 C6 sing N N 224 LCG C6 O6 doub N N 225 LCG C6 N1 sing N N 226 LCG "C2'" "C1'" sing N N 227 LCG "C2'" "O2'" sing N N 228 LCG "C2'" "H2'" sing N N 229 LCG "C4'" "O4'" sing N N 230 LCG "C1'" "O4'" sing N N 231 LCG "C1'" "H1'" sing N N 232 LCG C2 N1 sing N N 233 LCG C2 N2 sing N N 234 LCG C2 N3 doub N N 235 LCG N1 H1 sing N N 236 LCG OP2 HOP2 sing N N 237 LCG N2 H21 sing N N 238 LCG N2 H22 sing N N 239 LCG "O3'" "HO3'" sing N N 240 LCG OP3 HOP3 sing N N 241 PZG O4 C8 sing N N 242 PZG C8 C9 sing N N 243 PZG C8 C7 sing N N 244 PZG C9 C10 sing N N 245 PZG C9 O2 sing N N 246 PZG C10 O5 sing N N 247 PZG O3 C7 sing N N 248 PZG O6 P1 doub N N 249 PZG C12 N6 sing Y N 250 PZG C12 C11 doub Y N 251 PZG C7 C6 sing N N 252 PZG N6 N7 sing Y N 253 PZG O2 C6 sing N N 254 PZG O5 P1 sing N N 255 PZG C6 N5 sing N N 256 PZG P1 C11 sing N N 257 PZG P1 O7 sing N N 258 PZG C11 C13 sing Y N 259 PZG N7 C13 doub Y N 260 PZG C13 C14 sing N N 261 PZG N5 C3 sing Y N 262 PZG N5 C5 sing Y N 263 PZG N3 C3 sing N N 264 PZG N3 C2 doub N N 265 PZG C3 C4 doub Y N 266 PZG C5 N4 doub Y N 267 PZG N2 C2 sing N N 268 PZG C2 N1 sing N N 269 PZG C4 N4 sing Y N 270 PZG C4 C1 sing N N 271 PZG N1 C1 sing N N 272 PZG C1 O1 doub N N 273 PZG N1 H1 sing N N 274 PZG N2 H2 sing N N 275 PZG N2 H3 sing N N 276 PZG C5 H4 sing N N 277 PZG C6 H5 sing N N 278 PZG C7 H6 sing N N 279 PZG O3 H7 sing N N 280 PZG C8 H8 sing N N 281 PZG O4 H9 sing N N 282 PZG C9 H10 sing N N 283 PZG C10 H11 sing N N 284 PZG C10 H12 sing N N 285 PZG O7 H13 sing N N 286 PZG C12 H14 sing N N 287 PZG N6 H15 sing N N 288 PZG C14 H16 sing N N 289 PZG C14 H17 sing N N 290 PZG C14 H18 sing N N 291 U OP3 P sing N N 292 U OP3 HOP3 sing N N 293 U P OP1 doub N N 294 U P OP2 sing N N 295 U P "O5'" sing N N 296 U OP2 HOP2 sing N N 297 U "O5'" "C5'" sing N N 298 U "C5'" "C4'" sing N N 299 U "C5'" "H5'" sing N N 300 U "C5'" "H5''" sing N N 301 U "C4'" "O4'" sing N N 302 U "C4'" "C3'" sing N N 303 U "C4'" "H4'" sing N N 304 U "O4'" "C1'" sing N N 305 U "C3'" "O3'" sing N N 306 U "C3'" "C2'" sing N N 307 U "C3'" "H3'" sing N N 308 U "O3'" "HO3'" sing N N 309 U "C2'" "O2'" sing N N 310 U "C2'" "C1'" sing N N 311 U "C2'" "H2'" sing N N 312 U "O2'" "HO2'" sing N N 313 U "C1'" N1 sing N N 314 U "C1'" "H1'" sing N N 315 U N1 C2 sing N N 316 U N1 C6 sing N N 317 U C2 O2 doub N N 318 U C2 N3 sing N N 319 U N3 C4 sing N N 320 U N3 H3 sing N N 321 U C4 O4 doub N N 322 U C4 C5 sing N N 323 U C5 C6 doub N N 324 U C5 H5 sing N N 325 U C6 H6 sing N N 326 # _ndb_struct_conf_na.entry_id 5HBX _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCA 3 1_555 B U 14 1_555 0.010 -0.100 0.006 -6.977 -2.136 -1.327 1 A_LCA3:U14_B A 3 ? B 14 ? 20 1 1 A LCG 4 1_555 B C 13 1_555 -0.392 -0.156 0.048 -3.654 -14.038 1.865 2 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.007 -0.134 0.230 5.707 -9.506 -4.156 3 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.245 -0.146 -0.103 9.788 -15.053 -0.422 4 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.041 -0.129 -0.041 4.424 -16.125 3.384 5 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.033 -0.171 0.109 2.495 -12.685 1.959 6 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.089 -0.139 0.070 -2.832 -18.226 4.937 7 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 -0.011 -0.150 0.038 -5.071 -13.532 1.457 8 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.213 -0.179 0.081 -5.964 -16.629 -0.767 9 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.201 -0.125 0.146 -2.173 -10.632 -2.620 10 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.370 -0.241 0.039 3.366 -13.104 1.085 11 A_C13:LCG4_B A 13 ? B 4 ? 19 1 1 A U 14 1_555 B LCA 3 1_555 0.024 -0.097 0.067 3.690 -9.391 -0.319 12 A_U14:LCA3_B A 14 ? B 3 ? 20 1 1 C LCA 3 1_555 D U 14 1_555 -0.027 -0.078 0.060 -6.066 -2.949 -1.389 13 C_LCA3:U14_D C 3 ? D 14 ? 20 1 1 C LCG 4 1_555 D C 13 1_555 -0.390 -0.130 -0.014 -3.945 -13.885 2.632 14 C_LCG4:C13_D C 4 ? D 13 ? 19 1 1 C A 5 1_555 D U 12 1_555 -0.074 -0.122 0.218 5.227 -9.783 -3.518 15 C_A5:U12_D C 5 ? D 12 ? 20 1 1 C C 6 1_555 D G 11 1_555 0.262 -0.161 -0.076 9.939 -15.319 0.718 16 C_C6:G11_D C 6 ? D 11 ? 19 1 1 C U 7 1_555 D A 10 1_555 0.022 -0.109 -0.061 4.488 -16.613 3.542 17 C_U7:A10_D C 7 ? D 10 ? 20 1 1 C U 8 1_555 D A 9 1_555 0.022 -0.122 0.072 3.000 -12.442 2.996 18 C_U8:A9_D C 8 ? D 9 ? 20 1 1 C A 9 1_555 D U 8 1_555 0.052 -0.137 0.054 -1.881 -18.278 5.039 19 C_A9:U8_D C 9 ? D 8 ? 20 1 1 C A 10 1_555 D U 7 1_555 0.048 -0.174 0.002 -4.729 -12.936 0.399 20 C_A10:U7_D C 10 ? D 7 ? 20 1 1 C G 11 1_555 D C 6 1_555 -0.209 -0.157 0.022 -7.520 -16.846 0.249 21 C_G11:C6_D C 11 ? D 6 ? 19 1 1 C U 12 1_555 D A 5 1_555 0.204 -0.112 0.150 -2.940 -10.622 -2.042 22 C_U12:A5_D C 12 ? D 5 ? 20 1 1 C C 13 1_555 D LCG 4 1_555 0.405 -0.190 0.066 4.167 -12.483 1.722 23 C_C13:LCG4_D C 13 ? D 4 ? 19 1 1 C U 14 1_555 D LCA 3 1_555 -0.084 -0.129 0.108 3.933 -9.357 0.484 24 C_U14:LCA3_D C 14 ? D 3 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCA 3 1_555 B U 14 1_555 A LCG 4 1_555 B C 13 1_555 0.568 -2.103 3.112 1.486 13.914 26.882 -6.301 -0.845 1.851 27.675 -2.956 30.246 1 AA_LCA3LCG4:C13U14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.346 -1.252 3.030 -2.281 3.777 31.954 -2.863 0.254 2.884 6.821 4.118 32.249 2 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.398 -1.530 3.157 2.644 3.563 33.024 -3.230 -0.277 3.002 6.233 -4.626 33.312 3 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.278 -1.743 3.346 -2.642 11.272 30.124 -5.019 0.060 2.560 20.749 4.863 32.224 4 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.402 -1.248 3.301 -2.910 10.609 30.406 -4.039 0.229 2.748 19.444 5.335 32.291 5 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.355 -1.522 3.190 1.274 18.592 32.442 -4.507 -0.410 2.061 30.357 -2.081 37.288 6 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.416 -1.310 3.261 -0.229 6.440 31.610 -3.457 0.709 2.947 11.671 0.414 32.244 7 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.176 -1.622 3.204 1.272 9.400 29.803 -4.630 -0.108 2.590 17.720 -2.398 31.243 8 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.381 -1.363 3.163 -1.408 4.366 34.464 -2.911 0.435 2.986 7.329 2.363 34.759 9 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.460 -1.158 3.086 1.877 6.360 32.190 -3.044 -0.519 2.833 11.320 -3.342 32.849 10 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 A C 13 1_555 B LCG 4 1_555 A U 14 1_555 B LCA 3 1_555 -0.095 -2.070 3.181 -0.790 10.030 27.431 -5.996 0.040 2.299 20.305 1.600 29.185 11 AA_C13U14:LCA3LCG4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 C LCA 3 1_555 D U 14 1_555 C LCG 4 1_555 D C 13 1_555 0.568 -2.082 3.158 2.498 13.414 26.930 -6.276 -0.669 1.966 26.735 -4.979 30.132 12 CC_LCA3LCG4:C13U14_DD C 3 ? D 14 ? C 4 ? D 13 ? 1 C LCG 4 1_555 D C 13 1_555 C A 5 1_555 D U 12 1_555 -0.329 -1.254 3.027 -2.674 4.384 31.737 -2.976 0.162 2.850 7.951 4.851 32.139 13 CC_LCG4A5:U12C13_DD C 4 ? D 13 ? C 5 ? D 12 ? 1 C A 5 1_555 D U 12 1_555 C C 6 1_555 D G 11 1_555 0.398 -1.493 3.144 2.438 3.430 33.212 -3.126 -0.311 3.000 5.971 -4.244 33.470 14 CC_A5C6:G11U12_DD C 5 ? D 12 ? C 6 ? D 11 ? 1 C C 6 1_555 D G 11 1_555 C U 7 1_555 D A 10 1_555 -0.328 -1.730 3.325 -2.240 11.803 29.707 -5.111 0.221 2.491 21.926 4.161 31.994 15 CC_C6U7:A10G11_DD C 6 ? D 11 ? C 7 ? D 10 ? 1 C U 7 1_555 D A 10 1_555 C U 8 1_555 D A 9 1_555 -0.376 -1.212 3.315 -3.104 10.034 30.946 -3.836 0.149 2.818 18.161 5.618 32.639 16 CC_U7U8:A9A10_DD C 7 ? D 10 ? C 8 ? D 9 ? 1 C U 8 1_555 D A 9 1_555 C A 9 1_555 D U 8 1_555 0.340 -1.488 3.183 1.190 18.616 31.251 -4.632 -0.403 2.021 31.309 -2.001 36.276 17 CC_U8A9:U8A9_DD C 8 ? D 9 ? C 9 ? D 8 ? 1 C A 9 1_555 D U 8 1_555 C A 10 1_555 D U 7 1_555 -0.426 -1.333 3.276 0.129 6.592 32.758 -3.370 0.761 2.958 11.542 -0.226 33.397 18 CC_A9A10:U7U8_DD C 9 ? D 8 ? C 10 ? D 7 ? 1 C A 10 1_555 D U 7 1_555 C G 11 1_555 D C 6 1_555 0.246 -1.598 3.266 1.714 10.172 29.523 -4.749 -0.156 2.596 19.236 -3.241 31.235 19 CC_A10G11:C6U7_DD C 10 ? D 7 ? C 11 ? D 6 ? 1 C G 11 1_555 D C 6 1_555 C U 12 1_555 D A 5 1_555 -0.395 -1.322 3.148 -2.005 4.169 34.733 -2.787 0.372 2.992 6.945 3.341 35.030 20 CC_G11U12:A5C6_DD C 11 ? D 6 ? C 12 ? D 5 ? 1 C U 12 1_555 D A 5 1_555 C C 13 1_555 D LCG 4 1_555 0.456 -1.186 3.043 1.403 6.007 31.715 -3.092 -0.596 2.794 10.864 -2.536 32.294 21 CC_U12C13:LCG4A5_DD C 12 ? D 5 ? C 13 ? D 4 ? 1 C C 13 1_555 D LCG 4 1_555 C U 14 1_555 D LCA 3 1_555 -0.087 -2.103 3.154 -0.780 10.664 26.921 -6.210 0.027 2.181 21.843 1.598 28.931 22 CC_C13U14:LCA3LCG4_DD C 13 ? D 4 ? C 14 ? D 3 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid ; PZG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DHC _pdbx_initial_refinement_model.details ? #