HEADER RNA 03-JAN-16 5HBY TITLE RNA PRIMER-TEMPLATE COMPLEX WITH 2-METHYLIMIDAZOLE-ACTIVATED MONOMER TITLE 2 ANALOGUE-3 BINDING SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.WANG,J.W.SZOSTAK REVDAT 4 06-MAR-24 5HBY 1 LINK REVDAT 3 20-NOV-19 5HBY 1 REMARK REVDAT 2 18-JAN-17 5HBY 1 JRNL REVDAT 1 07-DEC-16 5HBY 0 JRNL AUTH W.ZHANG,C.P.TAM,J.WANG,J.W.SZOSTAK JRNL TITL UNUSUAL BASE-PAIRING INTERACTIONS IN MONOMER-TEMPLATE JRNL TITL 2 COMPLEXES. JRNL REF ACS CENT SCI V. 2 916 2016 JRNL REFN ESSN 2374-7943 JRNL PMID 28058281 JRNL DOI 10.1021/ACSCENTSCI.6B00278 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 12091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 276 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 370 ; 0.035 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 170 ; 0.050 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 571 ; 3.036 ; 2.058 REMARK 3 BOND ANGLES OTHERS (DEGREES): 406 ; 3.705 ; 3.285 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 65 ; 0.709 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 194 ; 0.038 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 70 ; 0.006 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 369 ; 1.121 ; 1.258 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 370 ; 1.121 ; 1.260 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 572 ; 1.488 ; 1.898 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 570 ; 2.455 ;13.114 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 538 ; 2.129 ;12.763 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NONE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12711 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.050 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BOAT SHAPE CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM THIOCYANATE,MAGNESIUM REMARK 280 CHLORIDE,30% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000, PH REMARK 280 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.93650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.99350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.93650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.99350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 254 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 267 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A A 5 P A A 5 OP2 -0.125 REMARK 500 C A 6 O3' U A 7 P -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A A 5 0.06 SIDE CHAIN REMARK 500 U A 7 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 211 O REMARK 620 2 HOH A 219 O 89.5 REMARK 620 3 HOH A 220 O 89.8 91.1 REMARK 620 4 HOH A 230 O 89.9 88.0 179.0 REMARK 620 5 HOH A 239 O 177.7 92.0 88.4 92.0 REMARK 620 6 HOH A 263 O 85.2 174.6 89.9 91.0 93.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HBW RELATED DB: PDB REMARK 900 RELATED ID: 5HBX RELATED DB: PDB DBREF 5HBY A 1 13 PDB 5HBY 5HBY 1 13 SEQRES 1 A 13 LCC LCC LCC LCG A C U U A A G U C HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET PZG A 101 29 HET PZG A 102 29 HET MG A 103 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM PZG [(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE- HETNAM 2 PZG 1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2- HETNAM 3 PZG YL]METHOXY-(3-METHYL-1~{H}-PYRAZOL-4-YL)PHOSPHINIC HETNAM 4 PZG ACID HETNAM MG MAGNESIUM ION FORMUL 1 LCC 3(C11 H16 N3 O8 P) FORMUL 1 LCG C11 H14 N5 O8 P FORMUL 2 PZG 2(C14 H18 N7 O7 P) FORMUL 4 MG MG 2+ FORMUL 5 HOH *67(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.67 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.62 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.66 LINK O3' LCG A 4 P A A 5 1555 1555 1.62 LINK MG MG A 103 O HOH A 211 1555 2555 2.08 LINK MG MG A 103 O HOH A 219 1555 2555 2.08 LINK MG MG A 103 O HOH A 220 1555 2454 2.06 LINK MG MG A 103 O HOH A 230 1555 2555 2.06 LINK MG MG A 103 O HOH A 239 1555 2555 2.00 LINK MG MG A 103 O HOH A 263 1555 2454 2.07 SITE 1 AC1 15 LCC A 1 LCC A 3 LCG A 4 G A 11 SITE 2 AC1 15 U A 12 C A 13 PZG A 102 HOH A 205 SITE 3 AC1 15 HOH A 211 HOH A 213 HOH A 217 HOH A 220 SITE 4 AC1 15 HOH A 226 HOH A 228 HOH A 235 SITE 1 AC2 11 LCC A 1 LCC A 2 LCC A 3 U A 7 SITE 2 AC2 11 G A 11 U A 12 PZG A 101 HOH A 201 SITE 3 AC2 11 HOH A 202 HOH A 214 HOH A 231 SITE 1 AC3 6 HOH A 211 HOH A 219 HOH A 220 HOH A 230 SITE 2 AC3 6 HOH A 239 HOH A 263 CRYST1 45.873 31.987 33.426 90.00 122.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021799 0.000000 0.013640 0.00000 SCALE2 0.000000 0.031263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035290 0.00000 HETATM 1 O5' LCC A 1 -20.762 -11.658 -8.783 1.00 14.91 O HETATM 2 C5' LCC A 1 -21.950 -12.391 -8.483 1.00 13.50 C HETATM 3 C4' LCC A 1 -21.721 -13.886 -8.819 1.00 12.22 C HETATM 4 O4' LCC A 1 -21.516 -13.985 -10.266 1.00 11.66 O HETATM 5 C1' LCC A 1 -20.895 -15.301 -10.492 1.00 11.80 C HETATM 6 N1 LCC A 1 -19.639 -15.133 -11.223 1.00 10.16 N HETATM 7 C6 LCC A 1 -19.023 -13.907 -11.405 1.00 10.73 C HETATM 8 C5 LCC A 1 -17.911 -13.804 -12.192 1.00 11.73 C HETATM 9 C5M LCC A 1 -17.210 -12.468 -12.370 1.00 12.97 C HETATM 10 C4 LCC A 1 -17.462 -14.983 -12.805 1.00 10.99 C HETATM 11 N4 LCC A 1 -16.360 -14.924 -13.579 1.00 11.28 N HETATM 12 N3 LCC A 1 -18.030 -16.159 -12.624 1.00 11.08 N HETATM 13 C2 LCC A 1 -19.125 -16.281 -11.826 1.00 10.72 C HETATM 14 O2 LCC A 1 -19.663 -17.368 -11.607 1.00 11.74 O HETATM 15 C3' LCC A 1 -20.454 -14.579 -8.336 1.00 11.24 C HETATM 16 C2' LCC A 1 -20.787 -15.848 -9.072 1.00 11.37 C HETATM 17 O2' LCC A 1 -22.113 -16.130 -8.632 1.00 11.78 O HETATM 18 O3' LCC A 1 -20.606 -14.696 -6.908 1.00 12.25 O HETATM 19 C6' LCC A 1 -22.825 -14.830 -8.454 1.00 13.41 C HETATM 20 O5' LCC A 2 -18.820 -16.454 -6.336 1.00 11.52 O HETATM 21 C5' LCC A 2 -19.699 -17.544 -5.941 1.00 11.79 C HETATM 22 C4' LCC A 2 -19.148 -18.722 -6.708 1.00 9.85 C HETATM 23 O4' LCC A 2 -19.193 -18.508 -8.123 1.00 10.95 O HETATM 24 C1' LCC A 2 -18.224 -19.428 -8.735 1.00 10.94 C HETATM 25 N1 LCC A 2 -17.173 -18.577 -9.381 1.00 10.43 N HETATM 26 C6 LCC A 2 -17.110 -17.213 -9.151 1.00 11.43 C HETATM 27 C5 LCC A 2 -16.138 -16.413 -9.733 1.00 10.49 C HETATM 28 C5M LCC A 2 -16.051 -15.002 -9.477 1.00 11.32 C HETATM 29 C4 LCC A 2 -15.295 -17.087 -10.648 1.00 10.97 C HETATM 30 N4 LCC A 2 -14.338 -16.431 -11.333 1.00 10.80 N HETATM 31 N3 LCC A 2 -15.388 -18.413 -10.823 1.00 10.57 N HETATM 32 C2 LCC A 2 -16.303 -19.177 -10.212 1.00 10.92 C HETATM 33 O2 LCC A 2 -16.303 -20.413 -10.364 1.00 11.49 O HETATM 34 C3' LCC A 2 -17.685 -19.074 -6.515 1.00 10.57 C HETATM 35 C2' LCC A 2 -17.750 -20.167 -7.530 1.00 10.99 C HETATM 36 O2' LCC A 2 -18.826 -20.972 -7.110 1.00 10.96 O HETATM 37 O3' LCC A 2 -17.505 -19.550 -5.201 1.00 11.15 O HETATM 38 C6' LCC A 2 -19.794 -20.084 -6.409 1.00 11.19 C HETATM 39 P LCC A 2 -19.239 -14.954 -5.990 1.00 12.44 P HETATM 40 O1P LCC A 2 -19.732 -14.839 -4.582 1.00 14.02 O HETATM 41 O2P LCC A 2 -18.158 -14.167 -6.466 1.00 13.32 O HETATM 42 O5' LCC A 3 -15.061 -20.115 -5.152 1.00 11.85 O HETATM 43 C5' LCC A 3 -15.188 -21.534 -5.276 1.00 12.18 C HETATM 44 C4' LCC A 3 -14.214 -22.037 -6.284 1.00 11.12 C HETATM 45 O4' LCC A 3 -14.410 -21.352 -7.548 1.00 11.60 O HETATM 46 C1' LCC A 3 -13.178 -21.529 -8.294 1.00 11.11 C HETATM 47 N1 LCC A 3 -12.626 -20.230 -8.689 1.00 9.68 N HETATM 48 C6 LCC A 3 -13.044 -19.069 -8.127 1.00 10.37 C HETATM 49 C5 LCC A 3 -12.511 -17.878 -8.509 1.00 10.19 C HETATM 50 C5M LCC A 3 -12.906 -16.566 -7.934 1.00 10.53 C HETATM 51 C4 LCC A 3 -11.514 -17.957 -9.544 1.00 10.21 C HETATM 52 N4 LCC A 3 -10.979 -16.804 -10.024 1.00 10.15 N HETATM 53 N3 LCC A 3 -11.064 -19.108 -10.061 1.00 10.24 N HETATM 54 C2 LCC A 3 -11.591 -20.246 -9.608 1.00 10.62 C HETATM 55 O2 LCC A 3 -11.209 -21.341 -10.038 1.00 11.88 O HETATM 56 C3' LCC A 3 -12.782 -21.691 -6.059 1.00 11.79 C HETATM 57 C2' LCC A 3 -12.329 -22.336 -7.335 1.00 12.66 C HETATM 58 O2' LCC A 3 -12.889 -23.667 -7.291 1.00 13.30 O HETATM 59 O3' LCC A 3 -12.350 -22.467 -4.923 1.00 13.67 O HETATM 60 C6' LCC A 3 -14.186 -23.498 -6.552 1.00 12.66 C HETATM 61 P LCC A 3 -16.134 -19.262 -4.387 1.00 11.33 P HETATM 62 O1P LCC A 3 -16.440 -19.777 -3.002 1.00 12.63 O HETATM 63 O2P LCC A 3 -15.733 -17.893 -4.567 1.00 13.30 O HETATM 64 P LCG A 4 -11.192 -21.768 -3.960 1.00 13.82 P HETATM 65 OP1 LCG A 4 -10.759 -22.846 -3.024 1.00 16.96 O HETATM 66 O5' LCG A 4 -10.058 -21.542 -5.062 1.00 14.41 O HETATM 67 C5' LCG A 4 -9.120 -20.479 -4.885 1.00 14.37 C HETATM 68 C3' LCG A 4 -6.917 -19.831 -5.990 1.00 13.09 C HETATM 69 C6' LCG A 4 -7.799 -21.944 -6.540 1.00 12.60 C HETATM 70 N9 LCG A 4 -7.702 -18.161 -8.332 1.00 13.19 N HETATM 71 C8 LCG A 4 -8.481 -17.179 -7.814 1.00 12.59 C HETATM 72 C4 LCG A 4 -6.883 -17.558 -9.176 1.00 12.57 C HETATM 73 N7 LCG A 4 -8.136 -16.002 -8.221 1.00 14.02 N HETATM 74 C5 LCG A 4 -7.141 -16.204 -9.133 1.00 12.44 C HETATM 75 C6 LCG A 4 -6.430 -15.322 -9.924 1.00 12.34 C HETATM 76 C2' LCG A 4 -6.562 -20.155 -7.394 1.00 13.09 C HETATM 77 O6 LCG A 4 -6.555 -14.058 -10.076 1.00 14.02 O HETATM 78 C4' LCG A 4 -8.180 -20.568 -6.112 1.00 12.92 C HETATM 79 C1' LCG A 4 -7.751 -19.564 -8.130 1.00 13.29 C HETATM 80 C2 LCG A 4 -5.193 -17.244 -10.665 1.00 11.73 C HETATM 81 N1 LCG A 4 -5.462 -15.913 -10.708 1.00 12.23 N HETATM 82 O4' LCG A 4 -8.822 -19.851 -7.211 1.00 13.59 O HETATM 83 OP2 LCG A 4 -11.575 -20.547 -3.478 1.00 14.22 O HETATM 84 N2 LCG A 4 -4.224 -17.740 -11.414 1.00 12.24 N HETATM 85 N3 LCG A 4 -5.900 -18.142 -9.958 1.00 12.49 N HETATM 86 O2' LCG A 4 -6.626 -21.578 -7.507 1.00 13.93 O HETATM 87 O3' LCG A 4 -6.104 -20.513 -5.036 1.00 13.74 O