HEADER HYDROLASE 05-JAN-16 5HDE TITLE CRYSTAL STRUCTURE OF PTPN12 CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-301; COMPND 5 SYNONYM: PTP-PEST,PROTEIN-TYROSINE PHOSPHATASE G1,PTPG1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PTPN12, PTP, PROTEIN TYROSINE PHOSPHATASE, DEPHOSPHORYLATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DONG,S.LI,J.SHI REVDAT 4 08-NOV-23 5HDE 1 REMARK REVDAT 3 11-OCT-17 5HDE 1 REMARK REVDAT 2 04-OCT-17 5HDE 1 REMARK REVDAT 1 18-JAN-17 5HDE 0 JRNL AUTH H.DONG,J.SHI,J.LI,S.LI JRNL TITL CRYSTAL STRUCTURE OF PTPN12 CATALYTIC DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2593 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.459 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;34.281 ;23.504 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;12.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.618 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1996 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 1.991 ; 1.517 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1511 ; 2.457 ; 2.272 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 2.566 ; 1.827 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4459 ; 4.416 ;15.036 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2591 ; 1.684 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 88 ;28.796 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2795 ;20.353 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0853 0.9782 12.9253 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0428 REMARK 3 T33: 0.0684 T12: 0.0025 REMARK 3 T13: 0.0045 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0784 L22: 0.1183 REMARK 3 L33: 0.1042 L12: 0.0099 REMARK 3 L13: 0.0467 L23: -0.0680 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.0083 S13: -0.0053 REMARK 3 S21: 0.0038 S22: 0.0078 S23: 0.0017 REMARK 3 S31: -0.0073 S32: -0.0272 S33: -0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M POTASSIUM PHOSPHATE, 16% W/V PEG REMARK 280 8000, 20% V/V GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 42 O HOH A 501 1.92 REMARK 500 N LYS A 46 O HOH A 501 1.97 REMARK 500 O SER A 39 O HOH A 502 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 98 O HOH A 576 1545 1.78 REMARK 500 OH TYR A 48 OH TYR A 48 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 -17.49 -140.04 REMARK 500 ASP A 172 -2.42 77.54 REMARK 500 GLN A 183 -124.67 58.86 REMARK 500 CSP A 231 -128.79 -120.48 REMARK 500 CSP A 231 -117.56 -131.49 REMARK 500 CYS A 235 -60.39 -127.91 REMARK 500 VAL A 277 97.11 66.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 854 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 DBREF 5HDE A 1 301 UNP Q05209 PTN12_HUMAN 1 301 SEQADV 5HDE GLY A -5 UNP Q05209 EXPRESSION TAG SEQADV 5HDE SER A -4 UNP Q05209 EXPRESSION TAG SEQADV 5HDE HIS A -3 UNP Q05209 EXPRESSION TAG SEQADV 5HDE MET A -2 UNP Q05209 EXPRESSION TAG SEQADV 5HDE ALA A -1 UNP Q05209 EXPRESSION TAG SEQADV 5HDE SER A 0 UNP Q05209 EXPRESSION TAG SEQRES 1 A 307 GLY SER HIS MET ALA SER MET GLU GLN VAL GLU ILE LEU SEQRES 2 A 307 ARG LYS PHE ILE GLN ARG VAL GLN ALA MET LYS SER PRO SEQRES 3 A 307 ASP HIS ASN GLY GLU ASP ASN PHE ALA ARG ASP PHE MET SEQRES 4 A 307 ARG LEU ARG ARG LEU SER THR LYS TYR ARG THR GLU LYS SEQRES 5 A 307 ILE TYR PRO THR ALA THR GLY GLU LYS GLU GLU ASN VAL SEQRES 6 A 307 LYS LYS ASN ARG TYR LYS ASP ILE LEU PRO PHE ASP HIS SEQRES 7 A 307 SER ARG VAL LYS LEU THR LEU LYS THR PRO SER GLN ASP SEQRES 8 A 307 SER ASP TYR ILE ASN ALA ASN PHE ILE LYS GLY VAL TYR SEQRES 9 A 307 GLY PRO LYS ALA TYR VAL ALA THR GLN GLY PRO LEU ALA SEQRES 10 A 307 ASN THR VAL ILE ASP PHE TRP ARG MET ILE TRP GLU TYR SEQRES 11 A 307 ASN VAL VAL ILE ILE VAL MET ALA CYS ARG GLU PHE GLU SEQRES 12 A 307 MET GLY ARG LYS LYS CYS GLU ARG TYR TRP PRO LEU TYR SEQRES 13 A 307 GLY GLU ASP PRO ILE THR PHE ALA PRO PHE LYS ILE SER SEQRES 14 A 307 CYS GLU ASP GLU GLN ALA ARG THR ASP TYR PHE ILE ARG SEQRES 15 A 307 THR LEU LEU LEU GLU PHE GLN ASN GLU SER ARG ARG LEU SEQRES 16 A 307 TYR GLN PHE HIS TYR VAL ASN TRP PRO ASP HIS ASP VAL SEQRES 17 A 307 PRO SER SER PHE ASP SER ILE LEU ASP MET ILE SER LEU SEQRES 18 A 307 MET ARG LYS TYR GLN GLU HIS GLU ASP VAL PRO ILE CYS SEQRES 19 A 307 ILE HIS CSP SER ALA GLY CYS GLY ARG THR GLY ALA ILE SEQRES 20 A 307 CYS ALA ILE ASP TYR THR TRP ASN LEU LEU LYS ALA GLY SEQRES 21 A 307 LYS ILE PRO GLU GLU PHE ASN VAL PHE ASN LEU ILE GLN SEQRES 22 A 307 GLU MET ARG THR GLN ARG HIS SER ALA VAL GLN THR LYS SEQRES 23 A 307 GLU GLN TYR GLU LEU VAL HIS ARG ALA ILE ALA GLN LEU SEQRES 24 A 307 PHE GLU LYS GLN LEU GLN LEU TYR MODRES 5HDE CSP A 231 CYS MODIFIED RESIDUE HET CSP A 231 16 HET PO4 A 401 5 HETNAM CSP S-PHOSPHOCYSTEINE HETNAM PO4 PHOSPHATE ION FORMUL 1 CSP C3 H8 N O5 P S FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *354(H2 O) HELIX 1 AA1 GLU A 2 LYS A 18 1 17 HELIX 2 AA2 ASP A 26 ARG A 43 1 18 HELIX 3 AA3 THR A 50 LYS A 55 1 6 HELIX 4 AA4 GLU A 56 ASN A 62 5 7 HELIX 5 AA5 PHE A 70 ARG A 74 5 5 HELIX 6 AA6 THR A 113 TYR A 124 1 12 HELIX 7 AA7 PHE A 206 GLN A 220 1 15 HELIX 8 AA8 CYS A 235 ALA A 253 1 19 HELIX 9 AA9 ASN A 261 ARG A 270 1 10 HELIX 10 AB1 THR A 279 GLN A 299 1 21 SHEET 1 AA1 8 ALA A 91 ILE A 94 0 SHEET 2 AA1 8 TYR A 103 THR A 106 -1 O ALA A 105 N ASN A 92 SHEET 3 AA1 8 ILE A 227 HIS A 230 1 O ILE A 229 N VAL A 104 SHEET 4 AA1 8 ILE A 128 MET A 131 1 N VAL A 130 O CYS A 228 SHEET 5 AA1 8 GLU A 185 TYR A 194 1 O PHE A 192 N ILE A 129 SHEET 6 AA1 8 TYR A 173 PHE A 182 -1 N LEU A 180 O ARG A 187 SHEET 7 AA1 8 PHE A 160 ARG A 170 -1 N ARG A 170 O TYR A 173 SHEET 8 AA1 8 ILE A 155 PHE A 157 -1 N PHE A 157 O PHE A 160 SHEET 1 AA2 2 PHE A 136 GLU A 137 0 SHEET 2 AA2 2 ARG A 140 LYS A 141 -1 O ARG A 140 N GLU A 137 LINK C HIS A 230 N ACSP A 231 1555 1555 1.33 LINK C HIS A 230 N BCSP A 231 1555 1555 1.33 LINK C ACSP A 231 N SER A 232 1555 1555 1.33 LINK C BCSP A 231 N SER A 232 1555 1555 1.34 LINK P ACSP A 231 O1 PO4 A 401 1555 1555 1.51 LINK P ACSP A 231 O2 PO4 A 401 1555 1555 1.60 LINK P ACSP A 231 O3 PO4 A 401 1555 1555 1.43 LINK P ACSP A 231 O4 PO4 A 401 1555 1555 1.51 LINK O1PACSP A 231 P PO4 A 401 1555 1555 1.53 LINK O2PACSP A 231 P PO4 A 401 1555 1555 1.63 LINK O3PACSP A 231 P PO4 A 401 1555 1555 1.70 CISPEP 1 ALA A 158 PRO A 159 0 6.09 SITE 1 AC1 11 CSP A 231 SER A 232 ALA A 233 GLY A 234 SITE 2 AC1 11 CYS A 235 GLY A 236 ARG A 237 THR A 238 SITE 3 AC1 11 GLN A 278 HOH A 563 HOH A 598 CRYST1 136.010 40.967 75.686 90.00 116.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007352 0.000000 0.003687 0.00000 SCALE2 0.000000 0.024410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014780 0.00000