HEADER TRANSPORT PROTEIN/IMMUNE SYSTEM 05-JAN-16 5HDQ TITLE MNTC CO-STRUCTURE WITH MAB 305-78-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, COMPND 5 MN2+/ZN2+ ABC TRANSPORTER PERIPLASMIC PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: PSAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPARG4; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS TRANSPORT PROTEIN, MONOCLONAL ANTIBODY, TRANSPORT PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.PARRIS,L.MOSYAK REVDAT 3 27-SEP-23 5HDQ 1 REMARK REVDAT 2 12-OCT-16 5HDQ 1 JRNL REVDAT 1 21-SEP-16 5HDQ 0 JRNL AUTH A.V.GRIBENKO,K.PARRIS,L.MOSYAK,S.LI,L.HANDKE,J.C.HAWKINS, JRNL AUTH 2 E.SEVERINA,Y.V.MATSUKA,A.S.ANDERSON JRNL TITL HIGH RESOLUTION MAPPING OF BACTERICIDAL MONOCLONAL ANTIBODY JRNL TITL 2 BINDING EPITOPES ON STAPHYLOCOCCUS AUREUS ANTIGEN MNTC. JRNL REF PLOS PATHOG. V. 12 05908 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27689696 JRNL DOI 10.1371/JOURNAL.PPAT.1005908 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.9.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.6 REMARK 3 NUMBER OF REFLECTIONS : 43860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2236 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 83 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3896 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3956 REMARK 3 BIN FREE R VALUE : 0.2392 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.82 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 4 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.89100 REMARK 3 B22 (A**2) : 2.89020 REMARK 3 B33 (A**2) : 1.00080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.17300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.285 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.224 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.178 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.181 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5525 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7511 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1831 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 126 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 795 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5525 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 747 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6183 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA COMPLETENESS IS 91% 2.2A REMARK 4 REMARK 4 5HDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 61.6 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QGC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN COMPLEX (10 MM HEPES PH 7.5 REMARK 280 AND 150 MM NACL) WAS CONCENTRATED TO 5.16 MG/ML AND CRYSTALS REMARK 280 GROWN BY THE HANGING DROP METHOD USING 1 M LICL, 0.1 M MES, PH REMARK 280 6.0 AND 20% PEG 6K AS THE PRECIPITATING REAGENTS., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.85600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.86650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.85600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.86650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 ASN A 13 REMARK 465 GLY A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 ASN A 116 REMARK 465 LYS A 117 REMARK 465 GLY H 127 REMARK 465 CYS H 128 REMARK 465 GLY H 129 REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 465 THR H 132 REMARK 465 GLY H 133 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 ASN A 79 CG OD1 ND2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 GLN A 182 CG CD OE1 NE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 GLU H 211 CG CD OE1 OE2 REMARK 470 ARG L 155 CG CD NE CZ NH1 NH2 REMARK 470 ASN L 212 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 74.89 -66.86 REMARK 500 LYS A 57 -31.32 -169.61 REMARK 500 GLU A 76 44.00 -83.90 REMARK 500 ASN A 111 82.14 -19.65 REMARK 500 HIS A 123 39.40 -68.95 REMARK 500 ASP A 146 81.82 -157.95 REMARK 500 LYS A 174 -52.25 -29.22 REMARK 500 LYS A 180 -33.67 -36.22 REMARK 500 ARG A 183 69.85 -106.08 REMARK 500 THR A 263 -85.63 -104.43 REMARK 500 ASP A 274 20.68 -77.00 REMARK 500 SER H 156 29.83 47.27 REMARK 500 SER H 160 -40.16 -28.52 REMARK 500 GLN H 171 86.94 -164.85 REMARK 500 SER H 172 87.87 -171.19 REMARK 500 ALA L 51 -34.29 63.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 50 NE2 REMARK 620 2 HIS A 123 NE2 102.2 REMARK 620 3 GLU A 189 OE1 130.7 98.1 REMARK 620 4 GLU A 189 OE2 79.3 99.0 53.2 REMARK 620 5 ASP A 264 OD1 110.7 80.9 116.6 169.8 REMARK 620 6 ASP A 264 OD2 97.8 137.6 96.5 121.4 57.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 DBREF 5HDQ A 2 292 UNP W8TNQ9 W8TNQ9_STAAU 19 309 DBREF 5HDQ H 1 213 PDB 5HDQ 5HDQ 1 213 DBREF 5HDQ L 1 214 PDB 5HDQ 5HDQ 1 214 SEQADV 5HDQ MET A 1 UNP W8TNQ9 INITIATING METHIONINE SEQRES 1 A 292 MET GLY THR GLY GLY LYS GLN SER SER ASP LYS SER ASN SEQRES 2 A 292 GLY LYS LEU LYS VAL VAL THR THR ASN SER ILE LEU TYR SEQRES 3 A 292 ASP MET ALA LYS ASN VAL GLY GLY ASP ASN VAL ASP ILE SEQRES 4 A 292 HIS SER ILE VAL PRO VAL GLY GLN ASP PRO HIS GLU TYR SEQRES 5 A 292 GLU VAL LYS PRO LYS ASP ILE LYS LYS LEU THR ASP ALA SEQRES 6 A 292 ASP VAL ILE LEU TYR ASN GLY LEU ASN LEU GLU THR GLY SEQRES 7 A 292 ASN GLY TRP PHE GLU LYS ALA LEU GLU GLN ALA GLY LYS SEQRES 8 A 292 SER LEU LYS ASP LYS LYS VAL ILE ALA VAL SER LYS ASP SEQRES 9 A 292 VAL LYS PRO ILE TYR LEU ASN GLY GLU GLU GLY ASN LYS SEQRES 10 A 292 ASP LYS GLN ASP PRO HIS ALA TRP LEU SER LEU ASP ASN SEQRES 11 A 292 GLY ILE LYS TYR VAL LYS THR ILE GLN GLN THR PHE ILE SEQRES 12 A 292 ASP ASN ASP LYS LYS HIS LYS ALA ASP TYR GLU LYS GLN SEQRES 13 A 292 GLY ASN LYS TYR ILE ALA GLN LEU GLU LYS LEU ASN ASN SEQRES 14 A 292 ASP SER LYS ASP LYS PHE ASN ASP ILE PRO LYS GLU GLN SEQRES 15 A 292 ARG ALA MET ILE THR SER GLU GLY ALA PHE LYS TYR PHE SEQRES 16 A 292 SER LYS GLN TYR GLY ILE THR PRO GLY TYR ILE TRP GLU SEQRES 17 A 292 ILE ASN THR GLU LYS GLN GLY THR PRO GLU GLN MET ARG SEQRES 18 A 292 GLN ALA ILE GLU PHE VAL LYS LYS HIS LYS LEU LYS HIS SEQRES 19 A 292 LEU LEU VAL GLU THR SER VAL ASP LYS LYS ALA MET GLU SEQRES 20 A 292 SER LEU SER GLU GLU THR LYS LYS ASP ILE PHE GLY GLU SEQRES 21 A 292 VAL TYR THR ASP SER ILE GLY LYS GLU GLY THR LYS GLY SEQRES 22 A 292 ASP SER TYR TYR LYS MET MET LYS SER ASN ILE GLU THR SEQRES 23 A 292 VAL HIS GLY SER MET LYS SEQRES 1 H 220 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU ALA ARG SEQRES 2 H 220 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR PHE THR ARG TYR THR MET HIS TRP VAL GLN GLN SEQRES 4 H 220 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 220 PRO SER SER ASP TYR THR LYS TYR ASN GLN LYS PHE LYS SEQRES 6 H 220 ASP LYS ALA THR MET THR ALA ASP LYS SER SER SER THR SEQRES 7 H 220 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 220 ALA VAL TYR TYR CYS ALA ARG LYS GLU ASP VAL GLY TYR SEQRES 9 H 220 TRP TYR PHE ASP PHE TRP GLY THR GLY THR THR VAL THR SEQRES 10 H 220 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 220 LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER SEQRES 13 H 220 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SER SEQRES 14 H 220 VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR SEQRES 15 H 220 THR MET SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 220 PRO SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SEQRES 17 H 220 SER SER THR THR VAL ASP LYS LYS LEU GLU PRO SER SEQRES 1 L 220 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 220 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU TYR SER SER ASN GLU LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR SER TYR PRO TYR THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS HET FE A 301 1 HET GOL H 301 6 HETNAM FE FE (III) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 FE FE 3+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *197(H2 O) HELIX 1 AA1 ASN A 22 GLY A 33 1 12 HELIX 2 AA2 LYS A 57 ALA A 65 1 9 HELIX 3 AA3 THR A 77 ASN A 79 5 3 HELIX 4 AA4 GLY A 80 GLY A 90 1 11 HELIX 5 AA5 HIS A 123 LEU A 126 5 4 HELIX 6 AA6 SER A 127 ASP A 146 1 20 HELIX 7 AA7 HIS A 149 LYS A 172 1 24 HELIX 8 AA8 ASP A 173 ILE A 178 5 6 HELIX 9 AA9 PHE A 192 GLY A 200 1 9 HELIX 10 AB1 THR A 216 LYS A 231 1 16 HELIX 11 AB2 LYS A 243 LYS A 254 1 12 HELIX 12 AB3 SER A 275 LYS A 292 1 18 HELIX 13 AB4 THR H 28 THR H 30 5 3 HELIX 14 AB5 GLN H 61 LYS H 64 5 4 HELIX 15 AB6 THR H 83 SER H 87 5 5 HELIX 16 AB7 SER H 156 SER H 158 5 3 HELIX 17 AB8 LEU H 159 SER H 161 5 3 HELIX 18 AB9 SER H 186 TRP H 188 5 3 HELIX 19 AC1 PRO H 200 SER H 203 5 4 HELIX 20 AC2 LYS L 79 LEU L 83 5 5 HELIX 21 AC3 SER L 121 THR L 126 1 6 HELIX 22 AC4 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 ASP A 38 SER A 41 0 SHEET 2 AA1 4 LYS A 17 THR A 20 1 N VAL A 18 O ASP A 38 SHEET 3 AA1 4 VAL A 67 TYR A 70 1 O LEU A 69 N VAL A 19 SHEET 4 AA1 4 VAL A 98 ALA A 100 1 O ILE A 99 N ILE A 68 SHEET 1 AA2 2 ALA A 184 GLU A 189 0 SHEET 2 AA2 2 THR A 202 TRP A 207 1 O TRP A 207 N SER A 188 SHEET 1 AA3 2 LEU A 235 GLU A 238 0 SHEET 2 AA3 2 ILE A 257 VAL A 261 1 O VAL A 261 N VAL A 237 SHEET 1 AA4 4 GLN H 3 GLN H 6 0 SHEET 2 AA4 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA4 4 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 4 AA4 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA5 6 GLU H 10 ALA H 12 0 SHEET 2 AA5 6 THR H 107 VAL H 111 1 O THR H 110 N ALA H 12 SHEET 3 AA5 6 ALA H 88 GLU H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA5 6 TYR H 32 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA5 6 LEU H 45 ILE H 51 -1 O GLU H 46 N GLN H 38 SHEET 6 AA5 6 THR H 57 TYR H 59 -1 O LYS H 58 N TYR H 50 SHEET 1 AA6 4 GLU H 10 ALA H 12 0 SHEET 2 AA6 4 THR H 107 VAL H 111 1 O THR H 110 N ALA H 12 SHEET 3 AA6 4 ALA H 88 GLU H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA6 4 PHE H 102 TRP H 103 -1 O PHE H 102 N ARG H 94 SHEET 1 AA7 4 SER H 120 LEU H 124 0 SHEET 2 AA7 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AA7 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 AA7 4 VAL H 163 LEU H 170 -1 N PHE H 166 O SER H 178 SHEET 1 AA8 3 THR H 151 TRP H 154 0 SHEET 2 AA8 3 THR H 194 HIS H 199 -1 O SER H 196 N THR H 153 SHEET 3 AA8 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AA9 4 MET L 4 SER L 7 0 SHEET 2 AA9 4 VAL L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA9 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA9 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AB1 6 SER L 10 SER L 14 0 SHEET 2 AB1 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AB1 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB1 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB1 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AB2 4 SER L 10 SER L 14 0 SHEET 2 AB2 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AB2 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AB2 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB3 4 THR L 114 PHE L 118 0 SHEET 2 AB3 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 AB3 4 TYR L 173 THR L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB3 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AB4 4 SER L 153 ARG L 155 0 SHEET 2 AB4 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB4 4 SER L 191 HIS L 198 -1 O THR L 193 N LYS L 149 SHEET 4 AB4 4 SER L 201 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK NE2 HIS A 50 FE FE A 301 1555 1555 2.29 LINK NE2 HIS A 123 FE FE A 301 1555 1555 2.01 LINK OE1 GLU A 189 FE FE A 301 1555 1555 2.34 LINK OE2 GLU A 189 FE FE A 301 1555 1555 2.56 LINK OD1 ASP A 264 FE FE A 301 1555 1555 2.41 LINK OD2 ASP A 264 FE FE A 301 1555 1555 2.13 CISPEP 1 GLY A 112 GLU A 113 0 -2.17 CISPEP 2 GLU A 181 GLN A 182 0 9.12 CISPEP 3 PHE H 146 PRO H 147 0 -3.86 CISPEP 4 GLU H 148 SER H 149 0 5.56 CISPEP 5 GLN H 171 SER H 172 0 -8.00 CISPEP 6 SER H 172 GLY H 173 0 9.60 CISPEP 7 TRP H 188 PRO H 189 0 5.20 CISPEP 8 SER L 7 PRO L 8 0 -9.77 CISPEP 9 TYR L 94 PRO L 95 0 -5.19 CISPEP 10 TYR L 140 PRO L 141 0 -2.27 SITE 1 AC1 4 HIS A 50 HIS A 123 GLU A 189 ASP A 264 SITE 1 AC2 5 TYR H 91 THR H 105 GLY H 106 HOH H 438 SITE 2 AC2 5 GLN L 42 CRYST1 179.712 41.733 108.404 90.00 97.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005564 0.000000 0.000692 0.00000 SCALE2 0.000000 0.023962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009296 0.00000