HEADER TRANSFERASE 06-JAN-16 5HES TITLE HUMAN LEUCINE ZIPPER- AND STERILE ALPHA MOTIF-CONTAINING KINASE (ZAK, TITLE 2 MLT, HCCS-4, MRK, AZK, MLTK) IN COMPLEX WITH VEMURAFENIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE MLT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 5-309; COMPND 5 SYNONYM: HUMAN CERVICAL CANCER SUPPRESSOR GENE 4 PROTEIN,HCCS-4, COMPND 6 LEUCINE ZIPPER- AND STERILE ALPHA MOTIF-CONTAINING KINASE,MLK-LIKE COMPND 7 MITOGEN-ACTIVATED PROTEIN TRIPLE KINASE,MIXED LINEAGE KINASE-RELATED COMPND 8 KINASE,MRK,STERILE ALPHA MOTIF- AND LEUCINE ZIPPER-CONTAINING KINASE COMPND 9 AZK; COMPND 10 EC: 2.7.11.25; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZAK, MLTK, HCCS4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHEA,E.SALAH,K.R.ABDUL AZEEZ,C.TALLANT,M.SZKLARZ,A.CHAIKUAD, AUTHOR 2 B.SHRESTHA,F.J.SORRELL,J.M.ELKINS,L.SHRESTHA,N.BURGESS-BROWN,F.VON AUTHOR 3 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP REVDAT 5 10-JAN-24 5HES 1 HETSYN REVDAT 4 25-OCT-17 5HES 1 HETSYN REVDAT 3 29-JUN-16 5HES 1 JRNL REVDAT 2 06-APR-16 5HES 1 JRNL REVDAT 1 30-MAR-16 5HES 0 JRNL AUTH S.MATHEA,K.R.ABDUL AZEEZ,E.SALAH,C.TALLANT,F.WOLFREYS, JRNL AUTH 2 R.KONIETZNY,R.FISCHER,H.J.LOU,P.E.BRENNAN,G.SCHNAPP, JRNL AUTH 3 A.PAUTSCH,B.M.KESSLER,B.E.TURK,S.KNAPP JRNL TITL STRUCTURE OF THE HUMAN PROTEIN KINASE ZAK IN COMPLEX WITH JRNL TITL 2 VEMURAFENIB. JRNL REF ACS CHEM.BIOL. V. 11 1595 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 26999302 JRNL DOI 10.1021/ACSCHEMBIO.6B00043 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 44222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE PH 6.5, 200 MM REMARK 280 SODIUM MALONATE, 20% PEG3350, 10% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.67250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.33625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.00875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 THR A 162 REMARK 465 HIS A 163 REMARK 465 MET A 164 REMARK 465 SER A 165 REMARK 465 LEU A 166 REMARK 465 VAL A 167 REMARK 465 ASP A 300 REMARK 465 LEU A 301 REMARK 465 SER A 302 REMARK 465 PHE A 303 REMARK 465 LYS A 304 REMARK 465 GLU A 305 REMARK 465 GLN A 306 REMARK 465 GLU A 307 REMARK 465 LEU A 308 REMARK 465 LYS A 309 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 154 REMARK 465 SER B 155 REMARK 465 ARG B 156 REMARK 465 PHE B 157 REMARK 465 HIS B 158 REMARK 465 ASN B 159 REMARK 465 HIS B 160 REMARK 465 TPO B 161 REMARK 465 THR B 162 REMARK 465 HIS B 163 REMARK 465 MET B 164 REMARK 465 SER B 165 REMARK 465 LEU B 166 REMARK 465 VAL B 167 REMARK 465 ARG B 299 REMARK 465 ASP B 300 REMARK 465 LEU B 301 REMARK 465 SER B 302 REMARK 465 PHE B 303 REMARK 465 LYS B 304 REMARK 465 GLU B 305 REMARK 465 GLN B 306 REMARK 465 GLU B 307 REMARK 465 LEU B 308 REMARK 465 LYS B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 160 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 233 CZ NH1 NH2 REMARK 470 ARG A 284 CZ NH1 NH2 REMARK 470 ARG A 299 NE CZ NH1 NH2 REMARK 470 LYS B 12 CE NZ REMARK 470 LYS B 40 CE NZ REMARK 470 MET B 104 CE REMARK 470 ARG B 233 CZ NH1 NH2 REMARK 470 GLU B 298 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU A 51 O1P TPO A 161 2.09 REMARK 500 NE2 HIS A 158 O2P TPO A 161 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 83 CD GLU A 83 OE2 0.089 REMARK 500 TYR B 78 CZ TYR B 78 CE2 0.095 REMARK 500 GLU B 198 CD GLU B 198 OE1 0.067 REMARK 500 GLU B 198 CD GLU B 198 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 CYS A 150 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 14 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 188 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 19 -135.09 -107.62 REMARK 500 SER A 29 52.66 -99.47 REMARK 500 GLU A 51 -116.66 -99.36 REMARK 500 ASN A 95 32.33 -90.70 REMARK 500 ARG A 132 -14.81 81.63 REMARK 500 HIS A 158 60.72 -155.22 REMARK 500 HIS A 160 -126.53 126.14 REMARK 500 ASN A 279 35.93 -89.38 REMARK 500 PHE B 19 -137.24 -113.67 REMARK 500 SER B 29 49.24 -106.86 REMARK 500 ASN B 95 40.76 -92.61 REMARK 500 ASP B 133 44.87 -152.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 032 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 032 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 DBREF 5HES A 5 309 UNP Q9NYL2 MLTK_HUMAN 5 309 DBREF 5HES B 5 309 UNP Q9NYL2 MLTK_HUMAN 5 309 SEQADV 5HES SER A 3 UNP Q9NYL2 EXPRESSION TAG SEQADV 5HES MET A 4 UNP Q9NYL2 EXPRESSION TAG SEQADV 5HES SER B 3 UNP Q9NYL2 EXPRESSION TAG SEQADV 5HES MET B 4 UNP Q9NYL2 EXPRESSION TAG SEQRES 1 A 307 SER MET GLY ALA SER PHE VAL GLN ILE LYS PHE ASP ASP SEQRES 2 A 307 LEU GLN PHE PHE GLU ASN CYS GLY GLY GLY SER PHE GLY SEQRES 3 A 307 SER VAL TYR ARG ALA LYS TRP ILE SER GLN ASP LYS GLU SEQRES 4 A 307 VAL ALA VAL LYS LYS LEU LEU LYS ILE GLU LYS GLU ALA SEQRES 5 A 307 GLU ILE LEU SER VAL LEU SER HIS ARG ASN ILE ILE GLN SEQRES 6 A 307 PHE TYR GLY VAL ILE LEU GLU PRO PRO ASN TYR GLY ILE SEQRES 7 A 307 VAL THR GLU TYR ALA SER LEU GLY SER LEU TYR ASP TYR SEQRES 8 A 307 ILE ASN SER ASN ARG SER GLU GLU MET ASP MET ASP HIS SEQRES 9 A 307 ILE MET THR TRP ALA THR ASP VAL ALA LYS GLY MET HIS SEQRES 10 A 307 TYR LEU HIS MET GLU ALA PRO VAL LYS VAL ILE HIS ARG SEQRES 11 A 307 ASP LEU LYS SER ARG ASN VAL VAL ILE ALA ALA ASP GLY SEQRES 12 A 307 VAL LEU LYS ILE CYS ASP PHE GLY ALA SER ARG PHE HIS SEQRES 13 A 307 ASN HIS TPO THR HIS MET SER LEU VAL GLY THR PHE PRO SEQRES 14 A 307 TRP MET ALA PRO GLU VAL ILE GLN SER LEU PRO VAL SER SEQRES 15 A 307 GLU THR CYS ASP THR TYR SER TYR GLY VAL VAL LEU TRP SEQRES 16 A 307 GLU MET LEU THR ARG GLU VAL PRO PHE LYS GLY LEU GLU SEQRES 17 A 307 GLY LEU GLN VAL ALA TRP LEU VAL VAL GLU LYS ASN GLU SEQRES 18 A 307 ARG LEU THR ILE PRO SER SER CYS PRO ARG SER PHE ALA SEQRES 19 A 307 GLU LEU LEU HIS GLN CYS TRP GLU ALA ASP ALA LYS LYS SEQRES 20 A 307 ARG PRO SER PHE LYS GLN ILE ILE SER ILE LEU GLU SER SEQRES 21 A 307 MET SER ASN ASP THR SER LEU PRO ASP LYS CYS ASN SER SEQRES 22 A 307 PHE LEU HIS ASN LYS ALA GLU TRP ARG CYS GLU ILE GLU SEQRES 23 A 307 ALA THR LEU GLU ARG LEU LYS LYS LEU GLU ARG ASP LEU SEQRES 24 A 307 SER PHE LYS GLU GLN GLU LEU LYS SEQRES 1 B 307 SER MET GLY ALA SER PHE VAL GLN ILE LYS PHE ASP ASP SEQRES 2 B 307 LEU GLN PHE PHE GLU ASN CYS GLY GLY GLY SER PHE GLY SEQRES 3 B 307 SER VAL TYR ARG ALA LYS TRP ILE SER GLN ASP LYS GLU SEQRES 4 B 307 VAL ALA VAL LYS LYS LEU LEU LYS ILE GLU LYS GLU ALA SEQRES 5 B 307 GLU ILE LEU SER VAL LEU SER HIS ARG ASN ILE ILE GLN SEQRES 6 B 307 PHE TYR GLY VAL ILE LEU GLU PRO PRO ASN TYR GLY ILE SEQRES 7 B 307 VAL THR GLU TYR ALA SER LEU GLY SER LEU TYR ASP TYR SEQRES 8 B 307 ILE ASN SER ASN ARG SER GLU GLU MET ASP MET ASP HIS SEQRES 9 B 307 ILE MET THR TRP ALA THR ASP VAL ALA LYS GLY MET HIS SEQRES 10 B 307 TYR LEU HIS MET GLU ALA PRO VAL LYS VAL ILE HIS ARG SEQRES 11 B 307 ASP LEU LYS SER ARG ASN VAL VAL ILE ALA ALA ASP GLY SEQRES 12 B 307 VAL LEU LYS ILE CYS ASP PHE GLY ALA SER ARG PHE HIS SEQRES 13 B 307 ASN HIS TPO THR HIS MET SER LEU VAL GLY THR PHE PRO SEQRES 14 B 307 TRP MET ALA PRO GLU VAL ILE GLN SER LEU PRO VAL SER SEQRES 15 B 307 GLU THR CYS ASP THR TYR SER TYR GLY VAL VAL LEU TRP SEQRES 16 B 307 GLU MET LEU THR ARG GLU VAL PRO PHE LYS GLY LEU GLU SEQRES 17 B 307 GLY LEU GLN VAL ALA TRP LEU VAL VAL GLU LYS ASN GLU SEQRES 18 B 307 ARG LEU THR ILE PRO SER SER CYS PRO ARG SER PHE ALA SEQRES 19 B 307 GLU LEU LEU HIS GLN CYS TRP GLU ALA ASP ALA LYS LYS SEQRES 20 B 307 ARG PRO SER PHE LYS GLN ILE ILE SER ILE LEU GLU SER SEQRES 21 B 307 MET SER ASN ASP THR SER LEU PRO ASP LYS CYS ASN SER SEQRES 22 B 307 PHE LEU HIS ASN LYS ALA GLU TRP ARG CYS GLU ILE GLU SEQRES 23 B 307 ALA THR LEU GLU ARG LEU LYS LYS LEU GLU ARG ASP LEU SEQRES 24 B 307 SER PHE LYS GLU GLN GLU LEU LYS MODRES 5HES TPO A 161 THR MODIFIED RESIDUE HET TPO A 161 11 HET 032 A 401 33 HET EDO A 402 4 HET 032 B 401 33 HET EDO B 402 4 HETNAM TPO PHOSPHOTHREONINE HETNAM 032 N-(3-{[5-(4-CHLOROPHENYL)-1H-PYRROLO[2,3-B]PYRIDIN-3- HETNAM 2 032 YL]CARBONYL}-2,4-DIFLUOROPHENYL)PROPANE-1-SULFONAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN 032 VEMURAFENIB; PLX4032 HETSYN EDO ETHYLENE GLYCOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 032 2(C23 H18 CL F2 N3 O3 S) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *179(H2 O) HELIX 1 AA1 LYS A 12 ASP A 14 5 3 HELIX 2 AA2 GLY A 23 SER A 26 5 4 HELIX 3 AA3 SER A 37 ASP A 39 5 3 HELIX 4 AA4 LYS A 52 SER A 58 1 7 HELIX 5 AA5 LEU A 90 ASN A 95 1 6 HELIX 6 AA6 SER A 96 MET A 102 5 7 HELIX 7 AA7 ASP A 103 GLU A 124 1 22 HELIX 8 AA8 LYS A 135 ARG A 137 5 3 HELIX 9 AA9 THR A 169 MET A 173 5 5 HELIX 10 AB1 ALA A 174 GLN A 179 1 6 HELIX 11 AB2 GLU A 185 ARG A 202 1 18 HELIX 12 AB3 GLU A 210 LYS A 221 1 12 HELIX 13 AB4 PRO A 232 TRP A 243 1 12 HELIX 14 AB5 ASP A 246 ARG A 250 5 5 HELIX 15 AB6 SER A 252 ASP A 266 1 15 HELIX 16 AB7 SER A 268 ASN A 279 1 12 HELIX 17 AB8 ASN A 279 ARG A 299 1 21 HELIX 18 AB9 LYS B 12 ASP B 14 5 3 HELIX 19 AC1 GLY B 23 SER B 26 5 4 HELIX 20 AC2 LYS B 52 LEU B 60 5 9 HELIX 21 AC3 SER B 89 ASN B 95 1 7 HELIX 22 AC4 SER B 96 MET B 102 5 7 HELIX 23 AC5 ASP B 103 GLU B 124 1 22 HELIX 24 AC6 LYS B 135 ARG B 137 5 3 HELIX 25 AC7 THR B 169 MET B 173 5 5 HELIX 26 AC8 ALA B 174 GLN B 179 1 6 HELIX 27 AC9 GLU B 185 ARG B 202 1 18 HELIX 28 AD1 GLU B 210 ASN B 222 1 13 HELIX 29 AD2 PRO B 232 GLU B 244 1 13 HELIX 30 AD3 ASP B 246 ARG B 250 5 5 HELIX 31 AD4 SER B 252 SER B 264 1 13 HELIX 32 AD5 SER B 268 HIS B 278 1 11 HELIX 33 AD6 ASN B 279 LEU B 297 1 19 SHEET 1 AA1 5 LEU A 16 ASN A 21 0 SHEET 2 AA1 5 VAL A 30 TRP A 35 -1 O ARG A 32 N PHE A 19 SHEET 3 AA1 5 LYS A 40 LEU A 47 -1 O LYS A 40 N TRP A 35 SHEET 4 AA1 5 ASN A 77 GLU A 83 -1 O ILE A 80 N LYS A 45 SHEET 5 AA1 5 PHE A 68 GLU A 74 -1 N GLU A 74 O ASN A 77 SHEET 1 AA2 3 GLY A 88 SER A 89 0 SHEET 2 AA2 3 VAL A 139 ILE A 141 -1 O ILE A 141 N GLY A 88 SHEET 3 AA2 3 LEU A 147 ILE A 149 -1 O LYS A 148 N VAL A 140 SHEET 1 AA3 6 GLN B 10 ILE B 11 0 SHEET 2 AA3 6 PHE B 68 GLU B 74 1 O VAL B 71 N ILE B 11 SHEET 3 AA3 6 ASN B 77 GLU B 83 -1 O VAL B 81 N TYR B 69 SHEET 4 AA3 6 LYS B 40 LEU B 47 -1 N LYS B 45 O ILE B 80 SHEET 5 AA3 6 VAL B 30 TRP B 35 -1 N TRP B 35 O LYS B 40 SHEET 6 AA3 6 LEU B 16 ASN B 21 -1 N PHE B 19 O ARG B 32 SHEET 1 AA4 2 VAL B 139 ILE B 141 0 SHEET 2 AA4 2 LEU B 147 ILE B 149 -1 O LYS B 148 N VAL B 140 LINK C HIS A 160 N TPO A 161 1555 1555 1.34 LINK O3P TPO A 161 SG CYS A 285 1555 3655 1.69 CISPEP 1 PRO A 75 PRO A 76 0 11.72 CISPEP 2 PRO B 75 PRO B 76 0 11.65 SITE 1 AC1 18 GLY A 23 PHE A 27 VAL A 30 ALA A 43 SITE 2 AC1 18 LYS A 45 ILE A 66 ILE A 80 THR A 82 SITE 3 AC1 18 GLU A 83 TYR A 84 ALA A 85 ASP A 92 SITE 4 AC1 18 CYS A 150 ASP A 151 PHE A 152 GLY A 153 SITE 5 AC1 18 HOH A 501 HOH A 527 SITE 1 AC2 4 ARG A 63 ASP A 144 LYS A 148 PRO B 126 SITE 1 AC3 16 GLY B 23 PHE B 27 VAL B 30 ALA B 43 SITE 2 AC3 16 LYS B 45 ILE B 66 THR B 82 GLU B 83 SITE 3 AC3 16 TYR B 84 ALA B 85 ASP B 92 CYS B 150 SITE 4 AC3 16 ASP B 151 PHE B 152 GLY B 153 HOH B 548 SITE 1 AC4 3 PRO A 126 ASP B 144 LYS B 148 CRYST1 78.712 78.712 133.345 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007499 0.00000