data_5HF1 # _entry.id 5HF1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5HF1 WWPDB D_1000216940 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 1BE9 unspecified PDB . 5HDY unspecified PDB . 5HEB unspecified PDB . 5HED unspecified PDB . 5HET unspecified PDB . 5HEY unspecified PDB . 5HF4 unspecified PDB . 5HFB unspecified PDB . 5HFC unspecified PDB . 5HFD unspecified PDB . 5HFE unspecified PDB . 5HFF unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HF1 _pdbx_database_status.recvd_initial_deposition_date 2016-01-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'White, K.I.' 1 'Raman, A.S.' 2 'Ranganathan, R.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_id_ASTM CELLB5 _citation.journal_id_CSD 0998 _citation.journal_id_ISSN 0092-8674 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 166 _citation.language ? _citation.page_first 468 _citation.page_last 480 _citation.title 'Origins of Allostery and Evolvability in Proteins: A Case Study.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2016.05.047 _citation.pdbx_database_id_PubMed 27321669 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Raman, A.S.' 1 primary 'White, K.I.' 2 primary 'Ranganathan, R.' 3 # _cell.entry_id 5HF1 _cell.length_a 89.724 _cell.length_b 89.724 _cell.length_c 89.724 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HF1 _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Disks large homolog 4' 12782.120 1 ? G330T 'PDZ-3 domain (UNP residues 302-402)' ? 2 polymer syn 'Cysteine-rich PDZ-binding protein' 1116.266 1 ? T99F 'PDZ3-binding domain (UNP residues 93-101)' 'Synthesized using standard FMOC chemistry, HPCL purified, and lyophilized.' 3 water nat water 18.015 102 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Postsynaptic density protein 95,PSD-95,Synapse-associated protein 90,SAP90' 2 'Cysteine-rich interactor of PDZ three,Cysteine-rich interactor of PDZ3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGTEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAA IALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVTD ; ;GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGTEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAA IALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVTD ; A ? 2 'polypeptide(L)' no no TKNYKQFSV TKNYKQFSV B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 PHE n 1 6 LEU n 1 7 GLY n 1 8 GLU n 1 9 GLU n 1 10 ASP n 1 11 ILE n 1 12 PRO n 1 13 ARG n 1 14 GLU n 1 15 PRO n 1 16 ARG n 1 17 ARG n 1 18 ILE n 1 19 VAL n 1 20 ILE n 1 21 HIS n 1 22 ARG n 1 23 GLY n 1 24 SER n 1 25 THR n 1 26 GLY n 1 27 LEU n 1 28 GLY n 1 29 PHE n 1 30 ASN n 1 31 ILE n 1 32 VAL n 1 33 GLY n 1 34 THR n 1 35 GLU n 1 36 ASP n 1 37 GLY n 1 38 GLU n 1 39 GLY n 1 40 ILE n 1 41 PHE n 1 42 ILE n 1 43 SER n 1 44 PHE n 1 45 ILE n 1 46 LEU n 1 47 ALA n 1 48 GLY n 1 49 GLY n 1 50 PRO n 1 51 ALA n 1 52 ASP n 1 53 LEU n 1 54 SER n 1 55 GLY n 1 56 GLU n 1 57 LEU n 1 58 ARG n 1 59 LYS n 1 60 GLY n 1 61 ASP n 1 62 GLN n 1 63 ILE n 1 64 LEU n 1 65 SER n 1 66 VAL n 1 67 ASN n 1 68 GLY n 1 69 VAL n 1 70 ASP n 1 71 LEU n 1 72 ARG n 1 73 ASN n 1 74 ALA n 1 75 SER n 1 76 HIS n 1 77 GLU n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 ILE n 1 82 ALA n 1 83 LEU n 1 84 LYS n 1 85 ASN n 1 86 ALA n 1 87 GLY n 1 88 GLN n 1 89 THR n 1 90 VAL n 1 91 THR n 1 92 ILE n 1 93 ILE n 1 94 ALA n 1 95 GLN n 1 96 TYR n 1 97 LYS n 1 98 PRO n 1 99 GLU n 1 100 GLU n 1 101 TYR n 1 102 SER n 1 103 ARG n 1 104 PHE n 1 105 GLU n 1 106 ALA n 1 107 ASN n 1 108 SER n 1 109 ARG n 1 110 VAL n 1 111 ASP n 1 112 SER n 1 113 SER n 1 114 GLY n 1 115 ARG n 1 116 ILE n 1 117 VAL n 1 118 THR n 1 119 ASP n 2 1 THR n 2 2 LYS n 2 3 ASN n 2 4 TYR n 2 5 LYS n 2 6 GLN n 2 7 PHE n 2 8 SER n 2 9 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 119 _entity_src_gen.gene_src_common_name Rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Dlg4, Dlgh4, Psd95' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Rattus norvegicus' _pdbx_entity_src_syn.organism_common_name Rat _pdbx_entity_src_syn.ncbi_taxonomy_id 10116 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.db_code _struct_ref.db_name _struct_ref.details _struct_ref.entity_id _struct_ref.id _struct_ref.seq_align _struct_ref.seq_dif _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_align_end DLG4_RAT UNP ? 1 1 ? ? P31016 ? ;LGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN AGQTVTIIAQYKPEEYSRFEA ; 302 ? CRIPT_RAT UNP ? 2 2 ? ? Q792Q4 ? TKNYKQTSV 93 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HF1 A 6 ? 106 ? P31016 302 ? 402 ? 302 402 2 2 5HF1 B 1 ? 9 ? Q792Q4 93 ? 101 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5HF1 GLY A 1 ? UNP P31016 ? ? 'expression tag' 297 1 1 5HF1 SER A 2 ? UNP P31016 ? ? 'expression tag' 298 2 1 5HF1 PRO A 3 ? UNP P31016 ? ? 'expression tag' 299 3 1 5HF1 GLU A 4 ? UNP P31016 ? ? 'expression tag' 300 4 1 5HF1 PHE A 5 ? UNP P31016 ? ? 'expression tag' 301 5 1 5HF1 THR A 34 ? UNP P31016 GLY 330 'engineered mutation' 330 6 1 5HF1 ASN A 107 ? UNP P31016 ? ? 'expression tag' 403 7 1 5HF1 SER A 108 ? UNP P31016 ? ? 'expression tag' 404 8 1 5HF1 ARG A 109 ? UNP P31016 ? ? 'expression tag' 405 9 1 5HF1 VAL A 110 ? UNP P31016 ? ? 'expression tag' 406 10 1 5HF1 ASP A 111 ? UNP P31016 ? ? 'expression tag' 407 11 1 5HF1 SER A 112 ? UNP P31016 ? ? 'expression tag' 408 12 1 5HF1 SER A 113 ? UNP P31016 ? ? 'expression tag' 409 13 1 5HF1 GLY A 114 ? UNP P31016 ? ? 'expression tag' 410 14 1 5HF1 ARG A 115 ? UNP P31016 ? ? 'expression tag' 411 15 1 5HF1 ILE A 116 ? UNP P31016 ? ? 'expression tag' 412 16 1 5HF1 VAL A 117 ? UNP P31016 ? ? 'expression tag' 413 17 1 5HF1 THR A 118 ? UNP P31016 ? ? 'expression tag' 414 18 1 5HF1 ASP A 119 ? UNP P31016 ? ? 'expression tag' 415 19 2 5HF1 PHE B 7 ? UNP Q792Q4 THR 99 'engineered mutation' 7 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HF1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Peptide was included in protein buffer to a final molar ratio of 2:1 relative to protein. Reservoir solution contained 1.2 M sodium citrate, pH 6.8. Equal amounts (1.5 microliters) of protein (9 mg/mL) and reservoir solution were mixed and equillibrated against 500 microliters of crystallization buffer. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-12-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791833 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791833 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5HF1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.747 _reflns.d_resolution_low 40.126 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13010 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.48 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 27.3 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 67.804 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.7469 _reflns_shell.d_res_low 1.8169 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.844 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 26.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5HF1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13010 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.48 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.126 _refine.ls_d_res_high 1.747 _refine.ls_percent_reflns_obs 99.48 _refine.ls_R_factor_obs 0.2012 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1993 _refine.ls_R_factor_R_free 0.2179 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 1301 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 1BE9 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'random selection' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 21.40 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 947 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1049 _refine_hist.d_res_high 1.747 _refine_hist.d_res_low 40.126 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1106 'X-RAY DIFFRACTION' ? f_angle_d 0.937 ? ? 1508 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 24.464 ? ? 422 'X-RAY DIFFRACTION' ? f_chiral_restr 0.050 ? ? 164 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 209 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7469 1.8169 1224 0.2883 96.00 0.3034 . . 135 . . 'X-RAY DIFFRACTION' . 1.8169 1.8995 1264 0.2496 100.00 0.2687 . . 142 . . 'X-RAY DIFFRACTION' . 1.8995 1.9997 1280 0.2341 100.00 0.2289 . . 142 . . 'X-RAY DIFFRACTION' . 1.9997 2.1250 1274 0.2007 100.00 0.2523 . . 141 . . 'X-RAY DIFFRACTION' . 2.1250 2.2890 1301 0.2044 100.00 0.2264 . . 145 . . 'X-RAY DIFFRACTION' . 2.2890 2.5193 1286 0.1869 100.00 0.2089 . . 143 . . 'X-RAY DIFFRACTION' . 2.5193 2.8838 1315 0.1901 100.00 0.1981 . . 146 . . 'X-RAY DIFFRACTION' . 2.8838 3.6329 1336 0.1871 100.00 0.1994 . . 149 . . 'X-RAY DIFFRACTION' . 3.6329 40.1364 1429 0.1869 99.00 0.2088 . . 158 . . # _struct.entry_id 5HF1 _struct.title ;The third PDZ domain from the synaptic protein PSD-95 (G330T mutant) in complex with a mutant C-terminal peptide derived from CRIPT (T-2F) ; _struct.pdbx_descriptor 'Disks large homolog 4, Cysteine-rich PDZ-binding protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HF1 _struct_keywords.text 'PDZ, GLGF, DHR, adhesion, synapse, synaptic density, peptide-binding domain, PEPTIDE BINDING PROTEIN' _struct_keywords.pdbx_keywords 'PEPTIDE BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 5 ? GLU A 9 ? PHE A 301 GLU A 305 5 ? 5 HELX_P HELX_P2 AA2 GLY A 49 ? GLY A 55 ? GLY A 345 GLY A 351 1 ? 7 HELX_P HELX_P3 AA3 SER A 75 ? ASN A 85 ? SER A 371 ASN A 381 1 ? 11 HELX_P HELX_P4 AA4 LYS A 97 ? ARG A 103 ? LYS A 393 ARG A 399 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 16 ? HIS A 21 ? ARG A 312 HIS A 317 AA1 2 THR A 89 ? TYR A 96 ? THR A 385 TYR A 392 AA1 3 ASP A 61 ? VAL A 66 ? ASP A 357 VAL A 362 AA1 4 VAL A 69 ? ASP A 70 ? VAL A 365 ASP A 366 AA2 1 PHE A 41 ? ILE A 45 ? PHE A 337 ILE A 341 AA2 2 PHE A 29 ? THR A 34 ? PHE A 325 THR A 330 AA2 3 TYR B 4 ? SER B 8 ? TYR B 4 SER B 8 AA3 1 SER A 108 ? VAL A 110 ? SER A 404 VAL A 406 AA3 2 ILE A 116 ? THR A 118 ? ILE A 412 THR A 414 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 18 ? N ILE A 314 O ILE A 92 ? O ILE A 388 AA1 2 3 O GLN A 95 ? O GLN A 391 N GLN A 62 ? N GLN A 358 AA1 3 4 N VAL A 66 ? N VAL A 362 O VAL A 69 ? O VAL A 365 AA2 1 2 O PHE A 41 ? O PHE A 337 N VAL A 32 ? N VAL A 328 AA2 2 3 N ILE A 31 ? N ILE A 327 O PHE B 7 ? O PHE B 7 AA3 1 2 N ARG A 109 ? N ARG A 405 O VAL A 117 ? O VAL A 413 # _atom_sites.entry_id 5HF1 _atom_sites.fract_transf_matrix[1][1] 0.011145 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011145 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011145 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 297 ? ? ? A . n A 1 2 SER 2 298 ? ? ? A . n A 1 3 PRO 3 299 299 PRO PRO A . n A 1 4 GLU 4 300 300 GLU GLU A . n A 1 5 PHE 5 301 301 PHE PHE A . n A 1 6 LEU 6 302 302 LEU LEU A . n A 1 7 GLY 7 303 303 GLY GLY A . n A 1 8 GLU 8 304 304 GLU GLU A . n A 1 9 GLU 9 305 305 GLU GLU A . n A 1 10 ASP 10 306 306 ASP ASP A . n A 1 11 ILE 11 307 307 ILE ILE A . n A 1 12 PRO 12 308 308 PRO PRO A . n A 1 13 ARG 13 309 309 ARG ARG A . n A 1 14 GLU 14 310 310 GLU GLU A . n A 1 15 PRO 15 311 311 PRO PRO A . n A 1 16 ARG 16 312 312 ARG ARG A . n A 1 17 ARG 17 313 313 ARG ARG A . n A 1 18 ILE 18 314 314 ILE ILE A . n A 1 19 VAL 19 315 315 VAL VAL A . n A 1 20 ILE 20 316 316 ILE ILE A . n A 1 21 HIS 21 317 317 HIS HIS A . n A 1 22 ARG 22 318 318 ARG ARG A . n A 1 23 GLY 23 319 319 GLY GLY A . n A 1 24 SER 24 320 320 SER SER A . n A 1 25 THR 25 321 321 THR THR A . n A 1 26 GLY 26 322 322 GLY GLY A . n A 1 27 LEU 27 323 323 LEU LEU A . n A 1 28 GLY 28 324 324 GLY GLY A . n A 1 29 PHE 29 325 325 PHE PHE A . n A 1 30 ASN 30 326 326 ASN ASN A . n A 1 31 ILE 31 327 327 ILE ILE A . n A 1 32 VAL 32 328 328 VAL VAL A . n A 1 33 GLY 33 329 329 GLY GLY A . n A 1 34 THR 34 330 330 THR THR A . n A 1 35 GLU 35 331 331 GLU GLU A . n A 1 36 ASP 36 332 332 ASP ASP A . n A 1 37 GLY 37 333 333 GLY GLY A . n A 1 38 GLU 38 334 334 GLU GLU A . n A 1 39 GLY 39 335 335 GLY GLY A . n A 1 40 ILE 40 336 336 ILE ILE A . n A 1 41 PHE 41 337 337 PHE PHE A . n A 1 42 ILE 42 338 338 ILE ILE A . n A 1 43 SER 43 339 339 SER SER A . n A 1 44 PHE 44 340 340 PHE PHE A . n A 1 45 ILE 45 341 341 ILE ILE A . n A 1 46 LEU 46 342 342 LEU LEU A . n A 1 47 ALA 47 343 343 ALA ALA A . n A 1 48 GLY 48 344 344 GLY GLY A . n A 1 49 GLY 49 345 345 GLY GLY A . n A 1 50 PRO 50 346 346 PRO PRO A . n A 1 51 ALA 51 347 347 ALA ALA A . n A 1 52 ASP 52 348 348 ASP ASP A . n A 1 53 LEU 53 349 349 LEU LEU A . n A 1 54 SER 54 350 350 SER SER A . n A 1 55 GLY 55 351 351 GLY GLY A . n A 1 56 GLU 56 352 352 GLU GLU A . n A 1 57 LEU 57 353 353 LEU LEU A . n A 1 58 ARG 58 354 354 ARG ARG A . n A 1 59 LYS 59 355 355 LYS LYS A . n A 1 60 GLY 60 356 356 GLY GLY A . n A 1 61 ASP 61 357 357 ASP ASP A . n A 1 62 GLN 62 358 358 GLN GLN A . n A 1 63 ILE 63 359 359 ILE ILE A . n A 1 64 LEU 64 360 360 LEU LEU A . n A 1 65 SER 65 361 361 SER SER A . n A 1 66 VAL 66 362 362 VAL VAL A . n A 1 67 ASN 67 363 363 ASN ASN A . n A 1 68 GLY 68 364 364 GLY GLY A . n A 1 69 VAL 69 365 365 VAL VAL A . n A 1 70 ASP 70 366 366 ASP ASP A . n A 1 71 LEU 71 367 367 LEU LEU A . n A 1 72 ARG 72 368 368 ARG ARG A . n A 1 73 ASN 73 369 369 ASN ASN A . n A 1 74 ALA 74 370 370 ALA ALA A . n A 1 75 SER 75 371 371 SER SER A . n A 1 76 HIS 76 372 372 HIS HIS A . n A 1 77 GLU 77 373 373 GLU GLU A . n A 1 78 GLN 78 374 374 GLN GLN A . n A 1 79 ALA 79 375 375 ALA ALA A . n A 1 80 ALA 80 376 376 ALA ALA A . n A 1 81 ILE 81 377 377 ILE ILE A . n A 1 82 ALA 82 378 378 ALA ALA A . n A 1 83 LEU 83 379 379 LEU LEU A . n A 1 84 LYS 84 380 380 LYS LYS A . n A 1 85 ASN 85 381 381 ASN ASN A . n A 1 86 ALA 86 382 382 ALA ALA A . n A 1 87 GLY 87 383 383 GLY GLY A . n A 1 88 GLN 88 384 384 GLN GLN A . n A 1 89 THR 89 385 385 THR THR A . n A 1 90 VAL 90 386 386 VAL VAL A . n A 1 91 THR 91 387 387 THR THR A . n A 1 92 ILE 92 388 388 ILE ILE A . n A 1 93 ILE 93 389 389 ILE ILE A . n A 1 94 ALA 94 390 390 ALA ALA A . n A 1 95 GLN 95 391 391 GLN GLN A . n A 1 96 TYR 96 392 392 TYR TYR A . n A 1 97 LYS 97 393 393 LYS LYS A . n A 1 98 PRO 98 394 394 PRO PRO A . n A 1 99 GLU 99 395 395 GLU GLU A . n A 1 100 GLU 100 396 396 GLU GLU A . n A 1 101 TYR 101 397 397 TYR TYR A . n A 1 102 SER 102 398 398 SER SER A . n A 1 103 ARG 103 399 399 ARG ARG A . n A 1 104 PHE 104 400 400 PHE PHE A . n A 1 105 GLU 105 401 401 GLU GLU A . n A 1 106 ALA 106 402 402 ALA ALA A . n A 1 107 ASN 107 403 403 ASN ASN A . n A 1 108 SER 108 404 404 SER SER A . n A 1 109 ARG 109 405 405 ARG ARG A . n A 1 110 VAL 110 406 406 VAL VAL A . n A 1 111 ASP 111 407 407 ASP ASP A . n A 1 112 SER 112 408 408 SER SER A . n A 1 113 SER 113 409 409 SER SER A . n A 1 114 GLY 114 410 410 GLY GLY A . n A 1 115 ARG 115 411 411 ARG ARG A . n A 1 116 ILE 116 412 412 ILE ILE A . n A 1 117 VAL 117 413 413 VAL VAL A . n A 1 118 THR 118 414 414 THR THR A . n A 1 119 ASP 119 415 415 ASP ASP A . n B 2 1 THR 1 1 ? ? ? B . n B 2 2 LYS 2 2 ? ? ? B . n B 2 3 ASN 3 3 3 ASN ASN B . n B 2 4 TYR 4 4 4 TYR TYR B . n B 2 5 LYS 5 5 5 LYS LYS B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 PHE 7 7 7 PHE PHE B . n B 2 8 SER 8 8 8 SER SER B . n B 2 9 VAL 9 9 9 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 501 77 HOH HOH A . C 3 HOH 2 502 19 HOH HOH A . C 3 HOH 3 503 70 HOH HOH A . C 3 HOH 4 504 65 HOH HOH A . C 3 HOH 5 505 104 HOH HOH A . C 3 HOH 6 506 24 HOH HOH A . C 3 HOH 7 507 34 HOH HOH A . C 3 HOH 8 508 88 HOH HOH A . C 3 HOH 9 509 28 HOH HOH A . C 3 HOH 10 510 96 HOH HOH A . C 3 HOH 11 511 103 HOH HOH A . C 3 HOH 12 512 40 HOH HOH A . C 3 HOH 13 513 16 HOH HOH A . C 3 HOH 14 514 27 HOH HOH A . C 3 HOH 15 515 1 HOH HOH A . C 3 HOH 16 516 76 HOH HOH A . C 3 HOH 17 517 61 HOH HOH A . C 3 HOH 18 518 36 HOH HOH A . C 3 HOH 19 519 11 HOH HOH A . C 3 HOH 20 520 66 HOH HOH A . C 3 HOH 21 521 3 HOH HOH A . C 3 HOH 22 522 41 HOH HOH A . C 3 HOH 23 523 32 HOH HOH A . C 3 HOH 24 524 53 HOH HOH A . C 3 HOH 25 525 4 HOH HOH A . C 3 HOH 26 526 63 HOH HOH A . C 3 HOH 27 527 49 HOH HOH A . C 3 HOH 28 528 80 HOH HOH A . C 3 HOH 29 529 26 HOH HOH A . C 3 HOH 30 530 6 HOH HOH A . C 3 HOH 31 531 7 HOH HOH A . C 3 HOH 32 532 15 HOH HOH A . C 3 HOH 33 533 30 HOH HOH A . C 3 HOH 34 534 12 HOH HOH A . C 3 HOH 35 535 23 HOH HOH A . C 3 HOH 36 536 52 HOH HOH A . C 3 HOH 37 537 105 HOH HOH A . C 3 HOH 38 538 91 HOH HOH A . C 3 HOH 39 539 56 HOH HOH A . C 3 HOH 40 540 89 HOH HOH A . C 3 HOH 41 541 35 HOH HOH A . C 3 HOH 42 542 93 HOH HOH A . C 3 HOH 43 543 44 HOH HOH A . C 3 HOH 44 544 38 HOH HOH A . C 3 HOH 45 545 10 HOH HOH A . C 3 HOH 46 546 2 HOH HOH A . C 3 HOH 47 547 9 HOH HOH A . C 3 HOH 48 548 18 HOH HOH A . C 3 HOH 49 549 21 HOH HOH A . C 3 HOH 50 550 55 HOH HOH A . C 3 HOH 51 551 25 HOH HOH A . C 3 HOH 52 552 17 HOH HOH A . C 3 HOH 53 553 60 HOH HOH A . C 3 HOH 54 554 79 HOH HOH A . C 3 HOH 55 555 72 HOH HOH A . C 3 HOH 56 556 33 HOH HOH A . C 3 HOH 57 557 8 HOH HOH A . C 3 HOH 58 558 57 HOH HOH A . C 3 HOH 59 559 83 HOH HOH A . C 3 HOH 60 560 46 HOH HOH A . C 3 HOH 61 561 81 HOH HOH A . C 3 HOH 62 562 102 HOH HOH A . C 3 HOH 63 563 14 HOH HOH A . C 3 HOH 64 564 73 HOH HOH A . C 3 HOH 65 565 50 HOH HOH A . C 3 HOH 66 566 39 HOH HOH A . C 3 HOH 67 567 71 HOH HOH A . C 3 HOH 68 568 5 HOH HOH A . C 3 HOH 69 569 31 HOH HOH A . C 3 HOH 70 570 48 HOH HOH A . C 3 HOH 71 571 75 HOH HOH A . C 3 HOH 72 572 58 HOH HOH A . C 3 HOH 73 573 42 HOH HOH A . C 3 HOH 74 574 99 HOH HOH A . C 3 HOH 75 575 84 HOH HOH A . C 3 HOH 76 576 64 HOH HOH A . C 3 HOH 77 577 20 HOH HOH A . C 3 HOH 78 578 87 HOH HOH A . C 3 HOH 79 579 59 HOH HOH A . C 3 HOH 80 580 68 HOH HOH A . C 3 HOH 81 581 54 HOH HOH A . C 3 HOH 82 582 22 HOH HOH A . C 3 HOH 83 583 98 HOH HOH A . C 3 HOH 84 584 47 HOH HOH A . C 3 HOH 85 585 37 HOH HOH A . C 3 HOH 86 586 69 HOH HOH A . C 3 HOH 87 587 62 HOH HOH A . C 3 HOH 88 588 82 HOH HOH A . C 3 HOH 89 589 94 HOH HOH A . C 3 HOH 90 590 51 HOH HOH A . C 3 HOH 91 591 86 HOH HOH A . C 3 HOH 92 592 95 HOH HOH A . C 3 HOH 93 593 74 HOH HOH A . C 3 HOH 94 594 85 HOH HOH A . C 3 HOH 95 595 45 HOH HOH A . C 3 HOH 96 596 101 HOH HOH A . C 3 HOH 97 597 90 HOH HOH A . C 3 HOH 98 598 43 HOH HOH A . C 3 HOH 99 599 67 HOH HOH A . D 3 HOH 1 101 97 HOH HOH B . D 3 HOH 2 102 13 HOH HOH B . D 3 HOH 3 103 29 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -4 ? 1 'SSA (A^2)' 6830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 101 ? D HOH . 2 1 B HOH 102 ? D HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-11-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 46.1559 65.6337 42.7345 0.2221 0.2423 0.2104 -0.0014 -0.0343 0.0401 3.5332 2.9435 2.0108 -0.2989 -0.9390 -0.1172 -0.1280 -0.4967 0.5162 -0.0076 -0.0161 -0.4498 -0.2332 0.3704 0.1745 'X-RAY DIFFRACTION' 2 ? refined 40.2826 62.6829 26.6578 0.2281 0.1244 0.1118 0.0123 -0.0144 0.0096 3.7941 1.8769 2.9213 -0.1164 0.1729 -0.2397 -0.0270 0.3514 -0.0553 -0.4733 0.0733 0.0812 0.1056 -0.1669 -0.0161 'X-RAY DIFFRACTION' 3 ? refined 34.3206 61.4277 31.7873 0.2051 0.1611 0.1681 0.0107 -0.0538 0.0486 4.0126 2.8302 4.1726 -1.2443 0.7440 -1.1664 -0.0074 0.1674 -0.0107 -0.4099 0.0780 0.3391 0.1030 -0.4435 -0.0727 'X-RAY DIFFRACTION' 4 ? refined 49.6533 50.7454 36.5733 0.2201 0.1103 0.1565 0.0733 0.0533 0.0415 6.3531 7.1024 6.5973 -1.8404 0.8181 0.5593 -0.3775 0.0570 -0.2238 0.2824 0.3223 -0.0414 0.4129 0.4032 0.0092 'X-RAY DIFFRACTION' 5 ? refined 38.9843 54.0080 22.3213 0.6642 0.2278 0.4459 0.0324 -0.0848 -0.0231 9.3796 3.2076 3.7395 -5.1040 2.2731 -2.1866 0.3046 0.0012 -0.5359 -0.2111 -0.3388 0.3175 0.7747 -0.1258 0.0899 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 299 through 317 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 318 through 350 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 351 through 392 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 393 through 415 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 4 through 9 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10pre_2104: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 591 ? ? O A HOH 597 ? ? 1.92 2 1 O A HOH 586 ? ? O A HOH 595 ? ? 2.09 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 599 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.12 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 331 ? CG ? A GLU 35 CG 2 1 Y 1 A GLU 331 ? CD ? A GLU 35 CD 3 1 Y 1 A GLU 331 ? OE1 ? A GLU 35 OE1 4 1 Y 1 A GLU 331 ? OE2 ? A GLU 35 OE2 5 1 Y 1 B ASN 3 ? CG ? B ASN 3 CG 6 1 Y 1 B ASN 3 ? OD1 ? B ASN 3 OD1 7 1 Y 1 B ASN 3 ? ND2 ? B ASN 3 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 297 ? A GLY 1 2 1 Y 1 A SER 298 ? A SER 2 3 1 Y 1 B THR 1 ? B THR 1 4 1 Y 1 B LYS 2 ? B LYS 2 # _pdbx_audit_support.funding_organization 'Robert A. Welch Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number I-1366 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #