HEADER HYDROLASE/DNA 06-JAN-16 5HF7 TITLE TDG ENZYME-SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: G/T MISMATCH-SPECIFIC THYMINE DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THYMINE-DNA GLYCOSYLASE,HTDG; COMPND 5 EC: 3.2.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (28-MER); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (28-MER); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TDG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 15 ORGANISM_TAXID: 32644 KEYWDS PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.POZHARSKI,S.S.MALIK,A.C.DROHAT REVDAT 5 06-MAR-24 5HF7 1 REMARK REVDAT 4 25-DEC-19 5HF7 1 REMARK REVDAT 3 20-SEP-17 5HF7 1 REMARK REVDAT 2 14-DEC-16 5HF7 1 JRNL REVDAT 1 28-SEP-16 5HF7 0 JRNL AUTH C.T.COEY,S.S.MALIK,L.S.PIDUGU,K.M.VARNEY,E.POZHARSKI, JRNL AUTH 2 A.C.DROHAT JRNL TITL STRUCTURAL BASIS OF DAMAGE RECOGNITION BY THYMINE DNA JRNL TITL 2 GLYCOSYLASE: KEY ROLES FOR N-TERMINAL RESIDUES. JRNL REF NUCLEIC ACIDS RES. V. 44 10248 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27580719 JRNL DOI 10.1093/NAR/GKW768 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 59281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2942 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3547 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2763 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3378 REMARK 3 BIN R VALUE (WORKING SET) : 0.2765 REMARK 3 BIN FREE R VALUE : 0.2729 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.76 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 169 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1540 REMARK 3 NUCLEIC ACID ATOMS : 1143 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.18490 REMARK 3 B22 (A**2) : 1.94430 REMARK 3 B33 (A**2) : 5.24060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.24580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.522 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.080 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.081 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.073 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.075 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2932 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4213 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 860 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 39 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 314 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2932 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 379 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3292 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|107 - A|126 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.4970 0.5074 49.5293 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.0565 REMARK 3 T33: 0.0747 T12: -0.0281 REMARK 3 T13: -0.0373 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.4448 L22: 2.7219 REMARK 3 L33: 6.5167 L12: 0.5952 REMARK 3 L13: 3.2240 L23: 1.4388 REMARK 3 S TENSOR REMARK 3 S11: 0.2418 S12: -0.0608 S13: -0.3579 REMARK 3 S21: -0.0876 S22: -0.1817 S23: 0.3012 REMARK 3 S31: 0.1586 S32: -0.6820 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|127 - A|158 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.9040 7.3335 53.0679 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: -0.0361 REMARK 3 T33: -0.0012 T12: -0.0025 REMARK 3 T13: -0.0419 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.4576 L22: 3.0685 REMARK 3 L33: 1.5962 L12: 0.2552 REMARK 3 L13: 0.2314 L23: 0.4223 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.0986 S13: -0.1129 REMARK 3 S21: -0.1031 S22: -0.0725 S23: -0.3978 REMARK 3 S31: 0.1220 S32: 0.1018 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|159 - A|173 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.5802 15.9063 44.2687 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.0697 REMARK 3 T33: 0.1025 T12: -0.0227 REMARK 3 T13: 0.0360 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.1869 L22: 6.4725 REMARK 3 L33: 9.8224 L12: 3.4321 REMARK 3 L13: -0.4470 L23: 0.9752 REMARK 3 S TENSOR REMARK 3 S11: -0.3154 S12: 0.1854 S13: -0.2180 REMARK 3 S21: -0.5531 S22: 0.1870 S23: -0.6516 REMARK 3 S31: -0.0442 S32: 0.4967 S33: 0.1284 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|174 - A|184 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.7835 5.3674 46.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.3568 T22: 0.0739 REMARK 3 T33: 0.1554 T12: 0.0308 REMARK 3 T13: 0.0467 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.4179 L22: 1.0264 REMARK 3 L33: 4.5019 L12: -2.2969 REMARK 3 L13: 2.7124 L23: 0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.2155 S13: -0.1326 REMARK 3 S21: -0.2169 S22: -0.0423 S23: -0.2423 REMARK 3 S31: 0.0756 S32: 0.2216 S33: -0.0564 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|185 - A|201 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.0948 8.0563 57.8445 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: -0.0166 REMARK 3 T33: -0.0533 T12: -0.0109 REMARK 3 T13: -0.0301 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 5.8690 L22: 3.0068 REMARK 3 L33: 1.4347 L12: 0.0590 REMARK 3 L13: 0.8660 L23: 0.4607 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: -0.0911 S13: -0.1249 REMARK 3 S21: 0.1985 S22: -0.1068 S23: -0.1868 REMARK 3 S31: 0.0770 S32: -0.1354 S33: 0.0546 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|202 - A|213 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.0772 7.6584 69.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.4362 T22: 0.1850 REMARK 3 T33: -0.0338 T12: -0.0430 REMARK 3 T13: -0.0038 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 7.2216 L22: 2.1340 REMARK 3 L33: 0.8772 L12: -0.7732 REMARK 3 L13: 2.3246 L23: -0.3423 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.2833 S13: -0.2051 REMARK 3 S21: 0.3737 S22: -0.2118 S23: 0.1622 REMARK 3 S31: -0.0045 S32: -0.3514 S33: 0.1161 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|214 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.3295 15.6409 66.9936 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.0355 REMARK 3 T33: 0.0530 T12: -0.0300 REMARK 3 T13: -0.1770 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.8168 L22: 3.9687 REMARK 3 L33: 1.8705 L12: 0.7241 REMARK 3 L13: 0.1433 L23: 0.4225 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -0.2043 S13: -0.0357 REMARK 3 S21: 0.7813 S22: -0.1880 S23: -0.4537 REMARK 3 S31: -0.1378 S32: 0.0584 S33: 0.1440 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|270 - A|295 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.7895 23.1752 51.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: -0.0317 REMARK 3 T33: -0.0031 T12: -0.0406 REMARK 3 T13: -0.0973 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 4.3431 L22: 1.8252 REMARK 3 L33: 1.5497 L12: 0.6835 REMARK 3 L13: 1.3642 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: -0.1709 S12: 0.1316 S13: 0.2932 REMARK 3 S21: -0.0565 S22: -0.0682 S23: -0.2167 REMARK 3 S31: -0.3872 S32: 0.1087 S33: 0.2392 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|296 - A|301 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.9768 19.4312 56.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.1748 REMARK 3 T33: 0.3147 T12: -0.0172 REMARK 3 T13: -0.0265 T23: 0.1231 REMARK 3 L TENSOR REMARK 3 L11: 7.1016 L22: 4.8726 REMARK 3 L33: 4.9384 L12: -0.3952 REMARK 3 L13: 2.7709 L23: 1.3382 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.1064 S13: -0.0347 REMARK 3 S21: 0.1878 S22: 0.1146 S23: -0.2757 REMARK 3 S31: -0.1794 S32: 0.2694 S33: -0.0645 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { C|1 - C|8 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.1285 27.1814 75.7652 REMARK 3 T TENSOR REMARK 3 T11: 0.7957 T22: 0.7384 REMARK 3 T33: 0.3073 T12: 0.1573 REMARK 3 T13: -0.0254 T23: -0.2583 REMARK 3 L TENSOR REMARK 3 L11: 6.3595 L22: 4.8687 REMARK 3 L33: 5.5257 L12: -4.8282 REMARK 3 L13: -2.1068 L23: -1.2284 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: -0.3363 S13: -0.1409 REMARK 3 S21: 0.3808 S22: 0.4545 S23: -0.8197 REMARK 3 S31: 0.5256 S32: 0.4563 S33: -0.5667 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { C|9 - C|15 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.1729 23.3522 49.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.1090 REMARK 3 T33: 0.1242 T12: -0.0002 REMARK 3 T13: -0.1541 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 7.8357 L22: 4.5048 REMARK 3 L33: 12.6102 L12: 1.0396 REMARK 3 L13: -3.4547 L23: -1.0892 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.2158 S13: 0.4515 REMARK 3 S21: 0.1255 S22: -0.0201 S23: 0.3090 REMARK 3 S31: -0.4305 S32: -0.6143 S33: 0.0820 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { C|16 - C|28 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.8843 10.0810 20.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.4732 T22: 0.0622 REMARK 3 T33: 0.1242 T12: -0.0174 REMARK 3 T13: -0.2024 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.4216 L22: 2.8994 REMARK 3 L33: 9.9440 L12: -0.7647 REMARK 3 L13: 0.6288 L23: 0.7349 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: 0.0226 S13: 0.0117 REMARK 3 S21: -0.4440 S22: -0.0186 S23: 0.2458 REMARK 3 S31: -0.3266 S32: -0.0514 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { D|1 - D|4 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.1160 8.6054 7.1411 REMARK 3 T TENSOR REMARK 3 T11: 0.5667 T22: 0.3021 REMARK 3 T33: 0.2121 T12: 0.1231 REMARK 3 T13: -0.3011 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 13.6942 L22: 7.0538 REMARK 3 L33: 6.9428 L12: -4.1978 REMARK 3 L13: 3.5958 L23: -4.4811 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.0903 S13: 0.4566 REMARK 3 S21: 0.0552 S22: 0.1213 S23: 0.7799 REMARK 3 S31: -0.5344 S32: -0.4008 S33: -0.2995 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: { D|5 - D|8 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.2073 6.6423 19.3034 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: -0.0372 REMARK 3 T33: 0.0267 T12: 0.0135 REMARK 3 T13: -0.1892 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.0387 L22: 13.3224 REMARK 3 L33: 6.5509 L12: -2.8536 REMARK 3 L13: 0.4338 L23: 1.2137 REMARK 3 S TENSOR REMARK 3 S11: 0.1513 S12: -0.1653 S13: 0.0176 REMARK 3 S21: -0.0481 S22: -0.0226 S23: -0.0515 REMARK 3 S31: -0.2753 S32: -0.2422 S33: -0.1287 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: { D|9 - D|15 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.5160 17.1007 35.7455 REMARK 3 T TENSOR REMARK 3 T11: 0.3748 T22: 0.1945 REMARK 3 T33: 0.1577 T12: -0.0479 REMARK 3 T13: -0.0739 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.1041 L22: 4.8889 REMARK 3 L33: 9.4320 L12: 0.3024 REMARK 3 L13: 1.5623 L23: -4.2553 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: -0.5578 S13: 0.1802 REMARK 3 S21: -0.0716 S22: 0.4011 S23: 0.1168 REMARK 3 S31: -0.7554 S32: -0.7014 S33: -0.5310 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: { D|16 - D|23 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.0511 22.8985 60.2246 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.2175 REMARK 3 T33: 0.0367 T12: 0.1396 REMARK 3 T13: 0.0216 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 8.7119 L22: 0.9825 REMARK 3 L33: 0.3260 L12: -2.1650 REMARK 3 L13: -5.5494 L23: 4.8301 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.5912 S13: 0.5402 REMARK 3 S21: 0.8156 S22: -0.0598 S23: 0.3700 REMARK 3 S31: -0.9505 S32: -0.6860 S33: 0.0870 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: { D|24 - D|28 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.5235 26.3105 81.3511 REMARK 3 T TENSOR REMARK 3 T11: 0.8002 T22: 0.5571 REMARK 3 T33: 0.1646 T12: 0.0817 REMARK 3 T13: -0.0271 T23: -0.2251 REMARK 3 L TENSOR REMARK 3 L11: 11.8479 L22: 9.5565 REMARK 3 L33: 7.4404 L12: 0.6671 REMARK 3 L13: 1.1673 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.5160 S12: -0.2125 S13: -1.5549 REMARK 3 S21: -0.0539 S22: 0.4839 S23: 0.3796 REMARK 3 S31: 0.8031 S32: -0.5886 S33: -0.9999 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 32.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 20% PEG 3350, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.51500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.51500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 82 REMARK 465 LYS A 83 REMARK 465 LYS A 84 REMARK 465 SER A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 SER A 88 REMARK 465 ALA A 89 REMARK 465 LYS A 90 REMARK 465 SER A 91 REMARK 465 LYS A 92 REMARK 465 GLU A 93 REMARK 465 LYS A 94 REMARK 465 GLN A 95 REMARK 465 GLU A 96 REMARK 465 LYS A 97 REMARK 465 ILE A 98 REMARK 465 THR A 99 REMARK 465 ASP A 100 REMARK 465 THR A 101 REMARK 465 PHE A 102 REMARK 465 LYS A 103 REMARK 465 VAL A 104 REMARK 465 LYS A 105 REMARK 465 ARG A 106 REMARK 465 ARG A 304 REMARK 465 ASN A 305 REMARK 465 MET A 306 REMARK 465 ASP A 307 REMARK 465 VAL A 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 240 CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 291 CE NZ REMARK 470 LYS A 300 CE NZ REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 27 O3' DC C 27 C3' -0.048 REMARK 500 DC D 8 O3' DC D 8 C3' -0.050 REMARK 500 DA D 16 O3' UF2 D 17 P 0.094 REMARK 500 UF2 D 17 O3' DG D 18 P -0.090 REMARK 500 DT D 19 O3' DT D 19 C3' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 28 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 16 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 21 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 256 30.85 -85.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 5HF7 A 82 308 UNP Q13569 TDG_HUMAN 82 308 DBREF 5HF7 C 1 28 PDB 5HF7 5HF7 1 28 DBREF 5HF7 D 1 28 PDB 5HF7 5HF7 1 28 SEQRES 1 A 227 SER LYS LYS SER GLY LYS SER ALA LYS SER LYS GLU LYS SEQRES 2 A 227 GLN GLU LYS ILE THR ASP THR PHE LYS VAL LYS ARG LYS SEQRES 3 A 227 VAL ASP ARG PHE ASN GLY VAL SER GLU ALA GLU LEU LEU SEQRES 4 A 227 THR LYS THR LEU PRO ASP ILE LEU THR PHE ASN LEU ASP SEQRES 5 A 227 ILE VAL ILE ILE GLY ILE ASN PRO GLY LEU MET ALA ALA SEQRES 6 A 227 TYR LYS GLY HIS HIS TYR PRO GLY PRO GLY ASN HIS PHE SEQRES 7 A 227 TRP LYS CYS LEU PHE MET SER GLY LEU SER GLU VAL GLN SEQRES 8 A 227 LEU ASN HIS MET ASP ASP HIS THR LEU PRO GLY LYS TYR SEQRES 9 A 227 GLY ILE GLY PHE THR ASN MET VAL GLU ARG THR THR PRO SEQRES 10 A 227 GLY SER LYS ASP LEU SER SER LYS GLU PHE ARG GLU GLY SEQRES 11 A 227 GLY ARG ILE LEU VAL GLN LYS LEU GLN LYS TYR GLN PRO SEQRES 12 A 227 ARG ILE ALA VAL PHE ASN GLY LYS CYS ILE TYR GLU ILE SEQRES 13 A 227 PHE SER LYS GLU VAL PHE GLY VAL LYS VAL LYS ASN LEU SEQRES 14 A 227 GLU PHE GLY LEU GLN PRO HIS LYS ILE PRO ASP THR GLU SEQRES 15 A 227 THR LEU CYS TYR VAL MET PRO SER SER SER ALA ARG CYS SEQRES 16 A 227 ALA GLN PHE PRO ARG ALA GLN ASP LYS VAL HIS TYR TYR SEQRES 17 A 227 ILE LYS LEU LYS ASP LEU ARG ASP GLN LEU LYS GLY ILE SEQRES 18 A 227 GLU ARG ASN MET ASP VAL SEQRES 1 C 28 DC DA DG DC DT DC DT DG DT DA DC DG DT SEQRES 2 C 28 DG DA DG DC DG DA DT DG DG DA DC DA DG SEQRES 3 C 28 DC DT SEQRES 1 D 28 DA DG DC DT DG DT DC DC DA DT DC DG DC SEQRES 2 D 28 DT DC DA UF2 DG DT DA DC DA DG DA DG DC SEQRES 3 D 28 DT DG HET UF2 D 17 20 HETNAM UF2 1-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D- HETNAM 2 UF2 ARABINOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE HETSYN UF2 2'-FLUORO-2'-DEOXYURIDINE FORMUL 3 UF2 C9 H12 F N2 O8 P FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 SER A 115 LEU A 120 1 6 HELIX 2 AA2 GLY A 142 GLY A 149 1 8 HELIX 3 AA3 HIS A 158 SER A 166 1 9 HELIX 4 AA4 ASN A 174 HIS A 179 5 6 HELIX 5 AA5 THR A 180 GLY A 186 1 7 HELIX 6 AA6 GLY A 199 LEU A 203 5 5 HELIX 7 AA7 SER A 204 GLN A 223 1 20 HELIX 8 AA8 GLY A 231 PHE A 243 1 13 HELIX 9 AA9 ARG A 281 GLU A 303 1 23 SHEET 1 AA1 5 ILE A 187 ASN A 191 0 SHEET 2 AA1 5 ILE A 134 GLY A 138 1 N ILE A 136 O GLY A 188 SHEET 3 AA1 5 ILE A 226 ASN A 230 1 O VAL A 228 N ILE A 137 SHEET 4 AA1 5 LEU A 265 MET A 269 1 O TYR A 267 N PHE A 229 SHEET 5 AA1 5 GLY A 253 LEU A 254 -1 N GLY A 253 O VAL A 268 LINK O3' DA D 16 P UF2 D 17 1555 1555 1.70 LINK O3' UF2 D 17 P DG D 18 1555 1555 1.52 CISPEP 1 GLY A 154 PRO A 155 0 8.20 CRYST1 97.030 52.750 81.340 90.00 95.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010306 0.000000 0.000934 0.00000 SCALE2 0.000000 0.018957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012344 0.00000