HEADER PEPTIDE BINDING PROTEIN 06-JAN-16 5HFC TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 (H372A MUTANT) TITLE 2 IN COMPLEX WITH A MUTANT C-TERMINAL PEPTIDE DERIVED FROM CRIPT (T-2F) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYSTEINE-RICH PDZ-BINDING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: PDZ3-BINDING DOMAIN (UNP RESIDUES 93-101); COMPND 13 SYNONYM: CYSTEINE-RICH INTERACTOR OF PDZ THREE,CYSTEINE-RICH COMPND 14 INTERACTOR OF PDZ3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES; COMPND 17 OTHER_DETAILS: SYNTHESIZED USING STANDARD FMOC CHEMISTRY, HPCL COMPND 18 PURIFIED, AND LYOPHILIZED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 14 ORGANISM_COMMON: RAT; SOURCE 15 ORGANISM_TAXID: 10116 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 2 27-SEP-23 5HFC 1 REMARK REVDAT 1 16-NOV-16 5HFC 0 JRNL AUTH A.S.RAMAN,K.I.WHITE,R.RANGANATHAN JRNL TITL ORIGINS OF ALLOSTERY AND EVOLVABILITY IN PROTEINS: A CASE JRNL TITL 2 STUDY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 166 468 2016 JRNL REFN ISSN 0092-8674 JRNL PMID 27321669 JRNL DOI 10.1016/J.CELL.2016.05.047 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10PRE_2104 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0103 - 3.7020 0.99 1336 150 0.1697 0.1898 REMARK 3 2 3.7020 - 2.9387 1.00 1258 139 0.1710 0.1924 REMARK 3 3 2.9387 - 2.5673 1.00 1222 136 0.1792 0.2103 REMARK 3 4 2.5673 - 2.3326 1.00 1223 137 0.1854 0.1803 REMARK 3 5 2.3326 - 2.1654 1.00 1204 134 0.1974 0.2596 REMARK 3 6 2.1654 - 2.0377 1.00 1190 132 0.1923 0.2118 REMARK 3 7 2.0377 - 1.9357 1.00 1195 133 0.2056 0.2313 REMARK 3 8 1.9357 - 1.8514 0.88 1054 117 0.2900 0.3143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1060 REMARK 3 ANGLE : 1.462 1444 REMARK 3 CHIRALITY : 0.733 155 REMARK 3 PLANARITY : 0.021 203 REMARK 3 DIHEDRAL : 23.328 405 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 299:303) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8167 66.7794 46.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.4282 T22: 0.5500 REMARK 3 T33: 0.7068 T12: 0.0052 REMARK 3 T13: -0.1147 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.7728 L22: 1.7764 REMARK 3 L33: 3.7226 L12: -1.0062 REMARK 3 L13: 0.4728 L23: 0.6520 REMARK 3 S TENSOR REMARK 3 S11: 0.1968 S12: -0.4919 S13: 0.2045 REMARK 3 S21: 0.4323 S22: 0.0165 S23: -0.7874 REMARK 3 S31: -0.1589 S32: 1.2197 S33: -0.2516 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 304:317) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4269 64.8068 41.6167 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.1878 REMARK 3 T33: 0.1871 T12: -0.0091 REMARK 3 T13: -0.0134 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.4118 L22: 2.5947 REMARK 3 L33: 3.3880 L12: 0.2167 REMARK 3 L13: -0.3305 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.3834 S13: 0.1455 REMARK 3 S21: 0.1102 S22: 0.0617 S23: -0.2706 REMARK 3 S31: -0.0107 S32: 0.1172 S33: -0.0671 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 318:346) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4563 59.9919 26.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.1811 REMARK 3 T33: 0.1337 T12: -0.0131 REMARK 3 T13: 0.0044 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.4402 L22: 2.1475 REMARK 3 L33: 4.5146 L12: -0.5185 REMARK 3 L13: -0.5213 L23: -0.5563 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.1692 S13: -0.0944 REMARK 3 S21: -0.1144 S22: 0.0717 S23: 0.1090 REMARK 3 S31: 0.1780 S32: -0.2697 S33: -0.0648 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 347:369) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6673 61.8739 34.1932 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.1667 REMARK 3 T33: 0.1386 T12: 0.0028 REMARK 3 T13: -0.0078 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.4243 L22: 2.0785 REMARK 3 L33: 2.9025 L12: 0.3943 REMARK 3 L13: -0.9176 L23: -0.2247 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: -0.1601 S13: 0.0792 REMARK 3 S21: 0.0331 S22: -0.0233 S23: -0.0142 REMARK 3 S31: -0.1376 S32: -0.1633 S33: -0.0486 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 370:380) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3816 57.9050 24.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.3080 REMARK 3 T33: 0.1372 T12: -0.0281 REMARK 3 T13: -0.0260 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.7033 L22: 7.8351 REMARK 3 L33: 3.9631 L12: 0.3201 REMARK 3 L13: -0.4840 L23: -2.7909 REMARK 3 S TENSOR REMARK 3 S11: -0.1171 S12: 0.3621 S13: -0.1049 REMARK 3 S21: -0.3560 S22: 0.5505 S23: 0.3807 REMARK 3 S31: 0.3398 S32: -0.6138 S33: -0.0080 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 381:403) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9058 57.0172 33.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1535 REMARK 3 T33: 0.1578 T12: -0.0224 REMARK 3 T13: 0.0086 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.0540 L22: 1.6752 REMARK 3 L33: 2.9888 L12: -0.8994 REMARK 3 L13: -0.2987 L23: 0.7291 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: -0.0249 S13: -0.0538 REMARK 3 S21: 0.0472 S22: 0.1737 S23: 0.0307 REMARK 3 S31: 0.0667 S32: -0.0956 S33: -0.0447 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 404:415) REMARK 3 ORIGIN FOR THE GROUP (A): 53.4530 52.5320 38.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.2424 T22: 0.2923 REMARK 3 T33: 0.2518 T12: 0.0927 REMARK 3 T13: -0.0758 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.9328 L22: 5.3151 REMARK 3 L33: 3.9004 L12: -0.2578 REMARK 3 L13: -0.1462 L23: -0.2200 REMARK 3 S TENSOR REMARK 3 S11: 0.2043 S12: 0.3056 S13: 0.2071 REMARK 3 S21: 0.0461 S22: -0.1691 S23: -0.5410 REMARK 3 S31: 0.1543 S32: 0.8610 S33: -0.1694 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 3:9) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4964 52.5861 22.4799 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.1767 REMARK 3 T33: 0.2548 T12: 0.0120 REMARK 3 T13: 0.0284 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.2916 L22: 3.3526 REMARK 3 L33: 5.2695 L12: -3.3509 REMARK 3 L13: 0.4028 L23: -2.2508 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: 0.0702 S13: -0.4880 REMARK 3 S21: -0.1856 S22: 0.1455 S23: 0.3920 REMARK 3 S31: 0.9582 S32: 0.0416 S33: -0.0685 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.851 REMARK 200 RESOLUTION RANGE LOW (A) : 40.001 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5430 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEPTIDE WAS INCLUDED IN PROTEIN BUFFER REMARK 280 TO A FINAL MOLAR RATIO OF 2:1 RELATIVE TO PROTEIN. RESERVOIR REMARK 280 SOLUTION CONTAINED 1.05 M SODIUM CITRATE, PH 7.0. EQUAL AMOUNTS REMARK 280 (1.5 MICROLITERS) OF PROTEIN (7 MG/ML) AND RESERVOIR SOLUTION REMARK 280 WERE MIXED AND EQUILLIBRATED AGAINST 500 MICROLITERS OF REMARK 280 CRYSTALLIZATION BUFFER., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.72250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.72250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.72250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.72250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.72250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.72250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.72250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.72250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.72250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.72250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.72250 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.08375 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.36125 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.08375 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.08375 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.08375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.36125 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.08375 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.36125 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.08375 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.36125 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.08375 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.36125 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.36125 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.08375 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.36125 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.08375 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.08375 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.08375 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.36125 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.08375 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.08375 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.36125 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.36125 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.36125 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.08375 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.36125 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.08375 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.36125 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.08375 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.08375 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.08375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 107 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 THR B 1 REMARK 465 LYS B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 354 O HOH A 504 1.46 REMARK 500 O HOH A 601 O HOH A 617 2.04 REMARK 500 OE1 GLU A 396 O HOH A 501 2.06 REMARK 500 O HOH A 550 O HOH A 567 2.18 REMARK 500 NZ LYS A 380 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 329 CA - C - O ANGL. DEV. = -11.9 DEGREES REMARK 500 TYR B 4 O - C - N ANGL. DEV. = -20.6 DEGREES REMARK 500 TYR B 4 O - C - N ANGL. DEV. = -22.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 331 -109.57 -79.09 REMARK 500 TYR B 4 153.24 82.55 REMARK 500 TYR B 4 156.80 82.55 REMARK 500 LYS B 5 145.38 -176.95 REMARK 500 LYS B 5 -67.15 -154.04 REMARK 500 GLN B 6 136.35 79.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 329 22.27 REMARK 500 TYR B 4 -31.00 REMARK 500 TYR B 4 -32.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BE9 RELATED DB: PDB REMARK 900 RELATED ID: 5HDY RELATED DB: PDB REMARK 900 RELATED ID: 5HEB RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HF4 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFD RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB REMARK 900 RELATED ID: 5HFF RELATED DB: PDB DBREF 5HFC A 302 402 UNP P31016 DLG4_RAT 302 402 DBREF 5HFC B 1 9 UNP Q792Q4 CRIPT_RAT 93 101 SEQADV 5HFC GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HFC SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HFC PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HFC GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HFC PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HFC ALA A 372 UNP P31016 HIS 372 ENGINEERED MUTATION SEQADV 5HFC ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HFC SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HFC ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HFC VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HFC ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HFC SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HFC SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HFC GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HFC ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HFC ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HFC VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HFC THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HFC ASP A 415 UNP P31016 EXPRESSION TAG SEQADV 5HFC PHE B 7 UNP Q792Q4 THR 99 ENGINEERED MUTATION SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER ALA GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP SEQRES 1 B 9 THR LYS ASN TYR LYS GLN PHE SER VAL FORMUL 3 HOH *124(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ASN A 381 1 11 HELIX 4 AA4 LYS A 393 ARG A 399 1 7 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 3 ILE A 336 ILE A 341 0 SHEET 2 AA2 3 PHE A 325 GLY A 329 -1 N ASN A 326 O PHE A 340 SHEET 3 AA2 3 LYS B 5 SER B 8 -1 O PHE B 7 N ILE A 327 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 CRYST1 89.445 89.445 89.445 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011180 0.00000