HEADER PEPTIDE BINDING PROTEIN 06-JAN-16 5HFF TITLE THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 (G330T, H372A TITLE 2 DOUBLE MUTANT) IN COMPLEX WITH A MUTANT C-TERMINAL PEPTIDE DERIVED TITLE 3 FROM CRIPT (T-2F) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ-3 DOMAIN (UNP RESIDUES 302-402); COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYSTEINE-RICH PDZ-BINDING PROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: PDZ3-BINDING DOMAIN (UNP RESIDUES 93-101); COMPND 13 SYNONYM: CYSTEINE-RICH INTERACTOR OF PDZ THREE,CYSTEINE-RICH COMPND 14 INTERACTOR OF PDZ3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 14 ORGANISM_COMMON: RAT; SOURCE 15 ORGANISM_TAXID: 10116 KEYWDS PDZ, GLGF, DHR, ADHESION, SYNAPSE, SYNAPTIC DENSITY, PEPTIDE-BINDING KEYWDS 2 DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.I.WHITE,A.S.RAMAN,R.RANGANATHAN REVDAT 2 27-SEP-23 5HFF 1 REMARK REVDAT 1 16-NOV-16 5HFF 0 JRNL AUTH A.S.RAMAN,K.I.WHITE,R.RANGANATHAN JRNL TITL ORIGINS OF ALLOSTERY AND EVOLVABILITY IN PROTEINS: A CASE JRNL TITL 2 STUDY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 166 468 2016 JRNL REFN ISSN 0092-8674 JRNL PMID 27321669 JRNL DOI 10.1016/J.CELL.2016.05.047 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2104: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5768 - 3.6377 1.00 1430 160 0.1823 0.2119 REMARK 3 2 3.6377 - 2.8877 1.00 1313 146 0.1661 0.2151 REMARK 3 3 2.8877 - 2.5228 1.00 1308 145 0.1624 0.2061 REMARK 3 4 2.5228 - 2.2922 1.00 1284 142 0.1547 0.2239 REMARK 3 5 2.2922 - 2.1279 1.00 1279 143 0.1606 0.2527 REMARK 3 6 2.1279 - 2.0024 1.00 1272 141 0.1705 0.2046 REMARK 3 7 2.0024 - 1.9022 1.00 1258 140 0.1798 0.2390 REMARK 3 8 1.9022 - 1.8194 1.00 1258 140 0.2088 0.2285 REMARK 3 9 1.8194 - 1.7493 0.94 1193 128 0.2295 0.2835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1088 REMARK 3 ANGLE : 1.396 1482 REMARK 3 CHIRALITY : 0.412 166 REMARK 3 PLANARITY : 0.008 202 REMARK 3 DIHEDRAL : 19.354 402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 298:301) REMARK 3 ORIGIN FOR THE GROUP (A): 56.6047 68.5424 44.1257 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.1339 REMARK 3 T33: 0.4072 T12: -0.2113 REMARK 3 T13: -0.0782 T23: 0.2226 REMARK 3 L TENSOR REMARK 3 L11: 0.6973 L22: 1.9118 REMARK 3 L33: 1.1048 L12: 0.4494 REMARK 3 L13: -0.8719 L23: -0.4007 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.3079 S13: -0.2170 REMARK 3 S21: 0.1931 S22: -0.0906 S23: -0.1942 REMARK 3 S31: 0.1530 S32: 0.1384 S33: 0.1535 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 302:306) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0353 62.8422 45.8861 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.4737 REMARK 3 T33: 0.6148 T12: 0.0614 REMARK 3 T13: -0.1325 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.7907 L22: 3.0405 REMARK 3 L33: 3.8109 L12: 2.8941 REMARK 3 L13: -3.5902 L23: -2.1623 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: -0.9682 S13: -0.8226 REMARK 3 S21: 0.3943 S22: 0.2922 S23: -0.8510 REMARK 3 S31: 0.7028 S32: 0.8934 S33: -0.4744 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 307:334) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6869 61.4417 31.2387 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.1529 REMARK 3 T33: 0.1408 T12: -0.0380 REMARK 3 T13: -0.0159 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.8194 L22: 1.6967 REMARK 3 L33: 3.5424 L12: -0.7980 REMARK 3 L13: -0.1226 L23: -0.3335 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: 0.1087 S13: -0.0935 REMARK 3 S21: 0.0453 S22: 0.0300 S23: 0.0670 REMARK 3 S31: 0.0233 S32: -0.2635 S33: 0.0273 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 335:351) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8000 64.0887 28.9351 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1249 REMARK 3 T33: 0.0834 T12: -0.0123 REMARK 3 T13: -0.0248 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.2180 L22: 5.0584 REMARK 3 L33: 3.9718 L12: 0.5496 REMARK 3 L13: -1.9898 L23: -1.9708 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: -0.1561 S13: 0.1517 REMARK 3 S21: 0.2477 S22: -0.1178 S23: -0.2976 REMARK 3 S31: -0.1479 S32: 0.0999 S33: -0.0036 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 352:387) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9819 61.4100 30.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.2043 REMARK 3 T33: 0.1153 T12: -0.0007 REMARK 3 T13: 0.0006 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.7399 L22: 3.3377 REMARK 3 L33: 2.5912 L12: -0.4878 REMARK 3 L13: 0.1320 L23: -0.8952 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.1822 S13: 0.0378 REMARK 3 S21: 0.0385 S22: 0.0313 S23: 0.2152 REMARK 3 S31: -0.0317 S32: -0.4241 S33: -0.0834 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 388:415) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0972 52.5603 36.8844 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1551 REMARK 3 T33: 0.1362 T12: 0.0181 REMARK 3 T13: -0.0261 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.3526 L22: 3.0590 REMARK 3 L33: 1.9976 L12: -1.8212 REMARK 3 L13: -0.3662 L23: 0.2710 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: -0.1188 S13: 0.0608 REMARK 3 S21: 0.1239 S22: 0.2655 S23: -0.2516 REMARK 3 S31: 0.3957 S32: 0.1710 S33: -0.0799 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 2:9) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7590 51.8838 22.7840 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.2356 REMARK 3 T33: 0.2657 T12: -0.0348 REMARK 3 T13: 0.0179 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 7.5620 L22: 1.0138 REMARK 3 L33: 5.7020 L12: -0.6182 REMARK 3 L13: 0.2124 L23: -0.6404 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: 0.2641 S13: -0.9177 REMARK 3 S21: -0.3326 S22: -0.2864 S23: 0.2300 REMARK 3 S31: 0.9889 S32: -0.1546 S33: 0.1066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791833 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.749 REMARK 200 RESOLUTION RANGE LOW (A) : 36.569 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.2220 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.826 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEPTIDE WAS INCLUDED IN PROTEIN BUFFER REMARK 280 TO A FINAL MOLAR RATIO OF 2:1 RELATIVE TO PROTEIN. RESERVOIR REMARK 280 SOLUTION CONTAINED 1.2 M SODIUM CITRATE, PH 6.75. EQUAL AMOUNTS REMARK 280 (1.5 MICROLITERS) OF PROTEIN (7 MG/ML) AND RESERVOIR SOLUTION REMARK 280 WERE MIXED AND EQUILLIBRATED AGAINST 500 MICROLITERS OF REMARK 280 CRYSTALLIZATION BUFFER., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.78750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.78750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.78750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.78750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.78750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.78750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.78750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.78750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.78750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.78750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.78750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.78750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.78750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.18125 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.39375 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.18125 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.18125 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.18125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.39375 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.18125 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.39375 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.18125 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.39375 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.18125 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.39375 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.39375 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.18125 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.39375 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.18125 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.18125 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.18125 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.39375 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.18125 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.18125 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.39375 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.39375 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.39375 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.18125 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.39375 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.18125 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.39375 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.18125 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.18125 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.18125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 657 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 THR B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 ARG A 399 CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LYS B 5 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 602 O HOH A 672 2.03 REMARK 500 OE1 GLU A 396 O HOH A 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 333 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 302 GLY A 303 -130.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BE9 RELATED DB: PDB REMARK 900 RELATED ID: 5HDY RELATED DB: PDB REMARK 900 RELATED ID: 5HEB RELATED DB: PDB REMARK 900 RELATED ID: 5HED RELATED DB: PDB REMARK 900 RELATED ID: 5HET RELATED DB: PDB REMARK 900 RELATED ID: 5HEY RELATED DB: PDB REMARK 900 RELATED ID: 5HF1 RELATED DB: PDB REMARK 900 RELATED ID: 5HF4 RELATED DB: PDB REMARK 900 RELATED ID: 5HFB RELATED DB: PDB REMARK 900 RELATED ID: 5HFC RELATED DB: PDB REMARK 900 RELATED ID: 5HFD RELATED DB: PDB REMARK 900 RELATED ID: 5HFE RELATED DB: PDB DBREF 5HFF A 302 402 UNP P31016 DLG4_RAT 302 402 DBREF 5HFF B 1 9 UNP Q792Q4 CRIPT_RAT 93 101 SEQADV 5HFF GLY A 297 UNP P31016 EXPRESSION TAG SEQADV 5HFF SER A 298 UNP P31016 EXPRESSION TAG SEQADV 5HFF PRO A 299 UNP P31016 EXPRESSION TAG SEQADV 5HFF GLU A 300 UNP P31016 EXPRESSION TAG SEQADV 5HFF PHE A 301 UNP P31016 EXPRESSION TAG SEQADV 5HFF THR A 330 UNP P31016 GLY 330 ENGINEERED MUTATION SEQADV 5HFF ALA A 372 UNP P31016 HIS 372 ENGINEERED MUTATION SEQADV 5HFF ASN A 403 UNP P31016 EXPRESSION TAG SEQADV 5HFF SER A 404 UNP P31016 EXPRESSION TAG SEQADV 5HFF ARG A 405 UNP P31016 EXPRESSION TAG SEQADV 5HFF VAL A 406 UNP P31016 EXPRESSION TAG SEQADV 5HFF ASP A 407 UNP P31016 EXPRESSION TAG SEQADV 5HFF SER A 408 UNP P31016 EXPRESSION TAG SEQADV 5HFF SER A 409 UNP P31016 EXPRESSION TAG SEQADV 5HFF GLY A 410 UNP P31016 EXPRESSION TAG SEQADV 5HFF ARG A 411 UNP P31016 EXPRESSION TAG SEQADV 5HFF ILE A 412 UNP P31016 EXPRESSION TAG SEQADV 5HFF VAL A 413 UNP P31016 EXPRESSION TAG SEQADV 5HFF THR A 414 UNP P31016 EXPRESSION TAG SEQADV 5HFF ASP A 415 UNP P31016 EXPRESSION TAG SEQADV 5HFF PHE B 7 UNP Q792Q4 THR 99 ENGINEERED MUTATION SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY THR GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER ALA GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP SEQRES 1 B 9 THR LYS ASN TYR LYS GLN PHE SER VAL HET GOL A 501 14 HET GOL A 502 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 PHE A 301 GLU A 305 5 5 HELIX 2 AA2 GLY A 345 GLY A 351 1 7 HELIX 3 AA3 SER A 371 ASN A 381 1 11 HELIX 4 AA4 LYS A 393 ARG A 399 1 7 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 3 PHE A 337 ILE A 341 0 SHEET 2 AA2 3 PHE A 325 THR A 330 -1 N VAL A 328 O PHE A 337 SHEET 3 AA2 3 TYR B 4 SER B 8 -1 O PHE B 7 N ILE A 327 SHEET 1 AA3 2 SER A 404 VAL A 406 0 SHEET 2 AA3 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 SITE 1 AC1 6 ARG A 354 LYS A 355 TYR A 392 ARG A 411 SITE 2 AC1 6 ILE A 412 THR A 414 SITE 1 AC2 3 VAL A 406 HOH A 607 HOH A 662 CRYST1 89.575 89.575 89.575 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011164 0.00000