HEADER HYDROLASE 07-JAN-16 5HFO TITLE CRYSTAL STRUCTURE OF OXA-232 BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OXA-232; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLAOXA-232; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CLASS D BETA-LACTAMASE OXA-232, ANTIBIOTIC, DIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RETAILLEAU,S.OUESLATI,C.CISSE,P.NORDMANN,T.NAAS,B.IORGA REVDAT 4 10-JAN-24 5HFO 1 REMARK REVDAT 3 05-MAY-21 5HFO 1 JRNL REVDAT 2 12-JUN-19 5HFO 1 JRNL REVDAT 1 18-JAN-17 5HFO 0 JRNL AUTH S.OUESLATI,P.RETAILLEAU,L.MARCHINI,C.BERTHAULT,L.DORTET, JRNL AUTH 2 R.A.BONNIN,B.I.IORGA,T.NAAS JRNL TITL ROLE OF ARGININE 214 IN THE SUBSTRATE SPECIFICITY OF OXA-48. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 64 2020 JRNL REFN ESSN 1098-6596 JRNL PMID 32071047 JRNL DOI 10.1128/AAC.02329-19 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 30389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2386 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3457 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2284 REMARK 3 BIN R VALUE (WORKING SET) : 0.3432 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.91520 REMARK 3 B22 (A**2) : -5.91520 REMARK 3 B33 (A**2) : 11.83030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.248 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.256 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4170 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5645 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1456 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 123 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 588 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4170 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 519 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4852 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 83.1695 23.9324 0.5227 REMARK 3 T TENSOR REMARK 3 T11: -0.1654 T22: -0.1882 REMARK 3 T33: 0.2479 T12: 0.0169 REMARK 3 T13: 0.0579 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.8744 L22: 1.2060 REMARK 3 L33: 0.6623 L12: -0.0729 REMARK 3 L13: -0.0800 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: -0.0237 S13: 0.1798 REMARK 3 S21: 0.0280 S22: -0.0330 S23: 0.1139 REMARK 3 S31: -0.0463 S32: -0.0369 S33: -0.0165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 100.5086 -3.3230 -2.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.2048 T22: -0.2011 REMARK 3 T33: 0.2496 T12: 0.0143 REMARK 3 T13: 0.0243 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.5556 L22: 2.1337 REMARK 3 L33: 0.7294 L12: -0.1432 REMARK 3 L13: -0.3043 L23: -0.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.1230 S13: -0.1035 REMARK 3 S21: -0.1638 S22: -0.0710 S23: -0.2587 REMARK 3 S31: 0.0160 S32: 0.0601 S33: 0.0024 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAXHF MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 17.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 30 %(W/V) PEG 3000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.42000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.71000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 23 REMARK 465 GLU A 267 REMARK 465 HIS A 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -134.95 53.62 REMARK 500 ASN A 106 44.37 -82.51 REMARK 500 SER A 155 0.79 -152.14 REMARK 500 ASP A 159 17.47 -142.50 REMARK 500 ALA B 69 -135.73 54.36 REMARK 500 ASN B 106 44.27 -82.55 REMARK 500 SER B 155 0.14 -152.07 REMARK 500 ASP B 159 17.67 -141.87 REMARK 500 ASN B 200 -169.98 -160.16 REMARK 500 GLU B 267 -24.17 -146.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 646 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 647 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 624 DISTANCE = 6.08 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 DBREF 5HFO A 23 265 UNP M4JTK1 M4JTK1_ECOLX 23 265 DBREF 5HFO B 23 265 UNP M4JTK1 M4JTK1_ECOLX 23 265 SEQADV 5HFO LEU A 266 UNP M4JTK1 EXPRESSION TAG SEQADV 5HFO GLU A 267 UNP M4JTK1 EXPRESSION TAG SEQADV 5HFO HIS A 268 UNP M4JTK1 EXPRESSION TAG SEQADV 5HFO LEU B 266 UNP M4JTK1 EXPRESSION TAG SEQADV 5HFO GLU B 267 UNP M4JTK1 EXPRESSION TAG SEQADV 5HFO HIS B 268 UNP M4JTK1 EXPRESSION TAG SEQRES 1 A 246 LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE SEQRES 2 A 246 THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN SEQRES 3 A 246 GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG SEQRES 4 A 246 ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX ILE SEQRES 5 A 246 PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS SEQRES 6 A 246 ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG SEQRES 7 A 246 ASP ILE ALA ALA TRP ASN ARG ASP HIS ASP LEU ILE THR SEQRES 8 A 246 ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE SEQRES 9 A 246 ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU SEQRES 10 A 246 HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN SEQRES 11 A 246 VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER SEQRES 12 A 246 ALA THR GLN GLN ILE ALA PHE LEU ARG LYS LEU TYR HIS SEQRES 13 A 246 ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL SEQRES 14 A 246 LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE SEQRES 15 A 246 ILE ARG ALA LYS THR GLY TYR SER THR SER ILE GLU PRO SEQRES 16 A 246 LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP SEQRES 17 A 246 ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SEQRES 18 A 246 SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU SEQRES 19 A 246 VAL LEU LYS GLN GLU LYS ILE ILE PRO LEU GLU HIS SEQRES 1 B 246 LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE SEQRES 2 B 246 THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN SEQRES 3 B 246 GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG SEQRES 4 B 246 ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX ILE SEQRES 5 B 246 PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS SEQRES 6 B 246 ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG SEQRES 7 B 246 ASP ILE ALA ALA TRP ASN ARG ASP HIS ASP LEU ILE THR SEQRES 8 B 246 ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE SEQRES 9 B 246 ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU SEQRES 10 B 246 HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN SEQRES 11 B 246 VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER SEQRES 12 B 246 ALA THR GLN GLN ILE ALA PHE LEU ARG LYS LEU TYR HIS SEQRES 13 B 246 ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL SEQRES 14 B 246 LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE SEQRES 15 B 246 ILE ARG ALA LYS THR GLY TYR SER THR SER ILE GLU PRO SEQRES 16 B 246 LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP SEQRES 17 B 246 ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SEQRES 18 B 246 SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU SEQRES 19 B 246 VAL LEU LYS GLN GLU LYS ILE ILE PRO LEU GLU HIS MODRES 5HFO KCX A 73 LYS MODIFIED RESIDUE MODRES 5HFO KCX B 73 LYS MODIFIED RESIDUE HET KCX A 73 12 HET KCX B 73 12 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET CL A 309 1 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET GOL B 304 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 SO4 7(O4 S 2-) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 11 CL CL 1- FORMUL 16 HOH *471(H2 O) HELIX 1 AA1 TRP A 31 HIS A 38 1 8 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASP A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 PHE A 142 1 12 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 SER A 165 HIS A 178 1 14 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 HIS B 38 1 8 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASP B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 PHE B 142 1 12 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 SER B 165 HIS B 178 1 14 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 TRP A 25 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N LEU A 46 O PHE A 55 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N GLY A 210 O TRP A 221 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 7 GLU B 24 GLU B 27 0 SHEET 2 AA2 7 GLN B 53 THR B 56 1 O GLY B 54 N GLU B 24 SHEET 3 AA2 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 4 AA2 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA2 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA2 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA2 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 LINK C PHE A 72 N KCX A 73 1555 1555 1.34 LINK C KCX A 73 N ILE A 74 1555 1555 1.36 LINK C PHE B 72 N KCX B 73 1555 1555 1.35 LINK C KCX B 73 N ILE B 74 1555 1555 1.35 CISPEP 1 GLU A 216 PRO A 217 0 0.92 CISPEP 2 GLU B 216 PRO B 217 0 2.32 SITE 1 AC1 6 SER A 184 GLU A 185 ARG A 186 HOH A 417 SITE 2 AC1 6 HOH A 478 ASN B 58 SITE 1 AC2 9 SER A 70 SER A 118 THR A 209 GLY A 210 SITE 2 AC2 9 TYR A 211 ARG A 250 HOH A 446 HOH A 455 SITE 3 AC2 9 HOH A 467 SITE 1 AC3 5 ASN A 48 LYS A 51 ASN A 231 HOH A 407 SITE 2 AC3 5 HOH A 409 SITE 1 AC4 6 GLN A 98 ARG A 100 GLN A 124 GOL A 305 SITE 2 AC4 6 HOH A 419 HOH A 527 SITE 1 AC5 4 VAL A 120 GLN A 124 SO4 A 304 HOH A 419 SITE 1 AC6 10 LYS A 39 SER A 40 GLN A 41 HIS A 140 SITE 2 AC6 10 ASP A 143 GLU A 147 PRO A 242 GOL A 308 SITE 3 AC6 10 HOH A 468 LYS B 39 SITE 1 AC7 7 ASN A 32 PHE A 35 GLN A 41 GLY A 42 SITE 2 AC7 7 ASN A 58 HOH A 404 HOH A 462 SITE 1 AC8 10 LYS A 39 SER A 40 HIS A 140 MET A 239 SITE 2 AC8 10 MET A 241 THR A 243 GLY A 246 GOL A 306 SITE 3 AC8 10 HOH A 459 HOH A 465 SITE 1 AC9 2 ARG A 206 ARG B 206 SITE 1 AD1 10 SER B 70 SER B 118 LYS B 208 THR B 209 SITE 2 AD1 10 GLY B 210 TYR B 211 ARG B 250 HOH B 430 SITE 3 AD1 10 HOH B 475 HOH B 492 SITE 1 AD2 6 ASN B 48 LYS B 51 ASN B 231 HOH B 403 SITE 2 AD2 6 HOH B 455 HOH B 486 SITE 1 AD3 5 LYS B 60 SER B 184 GLU B 185 HOH B 405 SITE 2 AD3 5 HOH B 489 SITE 1 AD4 6 LYS B 39 SER B 40 ASP B 240 ASP B 245 SITE 2 AD4 6 GLY B 246 HOH B 406 CRYST1 144.080 144.080 53.130 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006941 0.004007 0.000000 0.00000 SCALE2 0.000000 0.008014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018822 0.00000