HEADER IMMUNE SYSTEM 07-JAN-16 5HG3 OBSLTE 27-APR-16 5HG3 5IJB TITLE THE LIGAND-FREE STRUCTURE OF THE MOUSE TLR4/MD-2 COMPLEX CAVEAT 5HG3 NAG A 702 HAS WRONG CHIRALITY AT ATOM C1 NAG B 703 HAS WRONG CAVEAT 2 5HG3 CHIRALITY AT ATOM C1 NAG B 707 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 5HG3 C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4,VARIABLE LYMPHOCYTE RECEPTOR B COMPND 3 CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TLR4 ECTODOMAIN (UNP RESIDUES 27-544) + VLRB (UNP RESIDUES COMPND 6 126-200); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 96; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 22-157; COMPND 12 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 10090, 7764; SOURCE 5 GENE: TLR4, LPS, VLRB; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTIE1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: LY96, ESOP1, MD2; SOURCE 14 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTIE1 KEYWDS LEUCINE RICH REPEATS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,L.SU,M.MORIN REVDAT 3 27-APR-16 5HG3 1 REVDAT 2 02-MAR-16 5HG3 1 JRNL REVDAT 1 17-FEB-16 5HG3 0 JRNL AUTH Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.M.SURAKATTULA, JRNL AUTH 2 H.HUANG,H.SHI,J.H.CHOI,K.W.WANG,E.M.MORESCO,M.BERGER,X.ZHAN, JRNL AUTH 3 H.ZHANG,D.L.BOGER,B.BEUTLER JRNL TITL TLR4/MD-2 ACTIVATION BY A SYNTHETIC AGONIST WITH NO JRNL TITL 2 SIMILARITY TO LPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E884 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26831104 JRNL DOI 10.1073/PNAS.1525639113 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 252 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.03000 REMARK 3 B22 (A**2) : -3.03000 REMARK 3 B33 (A**2) : 6.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.006 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.465 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.373 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12173 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 11504 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16570 ; 1.667 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 26418 ; 0.887 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1451 ; 7.588 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 542 ;38.087 ;24.723 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2097 ;19.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;20.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1912 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13549 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2815 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5816 ; 6.535 ; 9.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5815 ; 6.535 ; 9.817 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7263 ;10.057 ;14.722 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51785 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, PH 7.5, 12% PEG10000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.50700 REMARK 290 SMTRY1 3 0.000000 -0.998611 0.000000 63.97800 REMARK 290 SMTRY2 3 1.001391 0.000000 0.000000 64.06700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 207.76050 REMARK 290 SMTRY1 4 0.000000 0.998611 0.000000 63.97800 REMARK 290 SMTRY2 4 -1.001391 0.000000 0.000000 64.06700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.25350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.97800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.06700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 207.76050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.97800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.06700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.25350 REMARK 290 SMTRY1 7 0.000000 0.998611 0.000000 0.00000 REMARK 290 SMTRY2 7 1.001391 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -0.998611 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.001391 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.50700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 619 REMARK 465 ARG D 156 REMARK 465 ARG D 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4 NAG C 202 C1 NAG C 203 1.61 REMARK 500 C4 NAG B 705 C1 NAG B 706 1.63 REMARK 500 OD1 ASP A 451 OG SER A 453 1.99 REMARK 500 O ILE B 585 OG SER B 589 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 451 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 451 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 54.94 -114.81 REMARK 500 VAL A 31 -38.21 -39.84 REMARK 500 PRO A 33 107.97 -46.25 REMARK 500 ILE A 35 -69.73 -140.85 REMARK 500 ASP A 41 69.31 23.61 REMARK 500 LYS A 43 34.27 38.61 REMARK 500 LYS A 46 -164.70 -123.05 REMARK 500 THR A 55 131.02 -36.27 REMARK 500 PHE A 62 13.84 59.06 REMARK 500 PRO A 64 79.92 -68.29 REMARK 500 LYS A 66 -66.51 61.97 REMARK 500 SER A 77 30.60 -160.47 REMARK 500 GLU A 78 24.72 -142.20 REMARK 500 ARG A 86 47.41 28.87 REMARK 500 CYS A 87 42.47 -97.83 REMARK 500 GLU A 88 18.22 42.70 REMARK 500 LEU A 100 66.49 -109.90 REMARK 500 ILE A 113 57.78 -98.71 REMARK 500 GLN A 114 -59.23 -13.43 REMARK 500 SER A 122 122.51 -37.20 REMARK 500 ASN A 159 -169.47 -127.77 REMARK 500 TYR A 183 54.74 37.00 REMARK 500 ASN A 184 -160.07 -115.29 REMARK 500 GLN A 202 43.52 -99.78 REMARK 500 ARG A 266 108.16 -55.13 REMARK 500 GLU A 277 153.44 -46.53 REMARK 500 THR A 290 -162.26 -120.91 REMARK 500 ASP A 298 -17.25 -47.40 REMARK 500 LEU A 305 1.63 -68.96 REMARK 500 ALA A 310 102.00 -161.65 REMARK 500 GLU A 322 -40.34 -144.70 REMARK 500 ASP A 323 58.61 -56.57 REMARK 500 ASP A 347 36.60 -155.01 REMARK 500 ILE A 363 -179.74 -66.19 REMARK 500 ALA A 382 49.16 -89.34 REMARK 500 PHE A 385 108.77 -160.71 REMARK 500 ASN A 407 -148.80 -114.83 REMARK 500 ASN A 415 33.72 -90.68 REMARK 500 ARG A 434 -5.26 81.18 REMARK 500 LEU A 444 52.87 -99.66 REMARK 500 LEU A 468 57.28 -103.72 REMARK 500 MET A 476 35.31 -147.84 REMARK 500 ASP A 483 14.49 44.34 REMARK 500 LEU A 517 62.76 -102.98 REMARK 500 ASN A 539 -9.56 -51.59 REMARK 500 LEU A 541 58.46 -90.41 REMARK 500 ILE A 561 -37.27 -36.86 REMARK 500 LEU A 568 110.06 166.56 REMARK 500 THR A 575 60.21 62.71 REMARK 500 LYS C 41 40.59 -140.21 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 460 PHE A 461 -142.88 REMARK 500 GLY A 512 VAL A 513 -135.61 REMARK 500 ASP B 460 PHE B 461 -138.11 REMARK 500 GLY B 512 VAL B 513 -137.06 REMARK 500 LEU B 565 THR B 566 145.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 701 bound REMARK 800 to ASN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 702 bound REMARK 800 to ASN A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 703 bound REMARK 800 to ASN A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 704 through NAG A 705 bound to ASN A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 701 through NAG B 702 bound to ASN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 707 through NAG B 708 bound to ASN B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 703 through NAG B 704 bound to ASN B 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 705 through NAG B 706 bound to ASN B 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG C 201 bound REMARK 800 to ASN C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG C REMARK 800 202 through NAG C 203 bound to ASN C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG D 202 bound REMARK 800 to ASN D 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG D 201 bound REMARK 800 to ASN D 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HG6 RELATED DB: PDB REMARK 900 RELATED ID: 5HG4 RELATED DB: PDB DBREF 5HG3 A 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG3 A 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5HG3 C 22 157 UNP Q9JHF9 LY96_MOUSE 22 157 DBREF 5HG3 B 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG3 B 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5HG3 D 22 157 UNP Q9JHF9 LY96_MOUSE 22 157 SEQRES 1 A 593 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 A 593 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 A 593 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 A 593 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 A 593 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 A 593 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 A 593 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 A 593 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 A 593 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 A 593 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 A 593 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 A 593 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 A 593 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 A 593 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 A 593 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 A 593 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 A 593 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 A 593 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 A 593 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 A 593 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 A 593 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 A 593 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 A 593 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 A 593 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 A 593 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 A 593 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 A 593 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 A 593 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 A 593 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 A 593 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 A 593 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 A 593 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 A 593 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 A 593 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 A 593 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 A 593 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 A 593 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 A 593 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 A 593 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 A 593 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 A 593 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 A 593 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 A 593 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 A 593 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 A 593 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 A 593 VAL ARG SER ILE ILE CYS PRO THR SEQRES 1 C 136 GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SER TYR SEQRES 2 C 136 SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER ILE SER SEQRES 3 C 136 SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN GLY PHE SEQRES 4 C 136 VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU LYS TYR SEQRES 5 C 136 LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER ILE GLU SEQRES 6 C 136 LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY HIS ASP SEQRES 7 C 136 ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY GLU THR SEQRES 8 C 136 VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY ILE LEU SEQRES 9 C 136 PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU ALA ILE SEQRES 10 C 136 ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU ASN PHE SEQRES 11 C 136 THR ILE ILE HIS ARG ARG SEQRES 1 B 593 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 B 593 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 B 593 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 B 593 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 B 593 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 B 593 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 B 593 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 B 593 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 B 593 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 B 593 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 B 593 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 B 593 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 B 593 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 B 593 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 B 593 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 B 593 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 B 593 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 B 593 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 B 593 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 B 593 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 B 593 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 B 593 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 B 593 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 B 593 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 B 593 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 B 593 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 B 593 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 B 593 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 B 593 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 B 593 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 B 593 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 B 593 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 B 593 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 B 593 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 B 593 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 B 593 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 B 593 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 B 593 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 B 593 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 B 593 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 B 593 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 B 593 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 B 593 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 B 593 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 B 593 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 B 593 VAL ARG SER ILE ILE CYS PRO THR SEQRES 1 D 136 GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SER TYR SEQRES 2 D 136 SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER ILE SER SEQRES 3 D 136 SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN GLY PHE SEQRES 4 D 136 VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU LYS TYR SEQRES 5 D 136 LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER ILE GLU SEQRES 6 D 136 LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY HIS ASP SEQRES 7 D 136 ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY GLU THR SEQRES 8 D 136 VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY ILE LEU SEQRES 9 D 136 PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU ALA ILE SEQRES 10 D 136 ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU ASN PHE SEQRES 11 D 136 THR ILE ILE HIS ARG ARG HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG A 705 14 HET NAG C 201 14 HET NAG C 202 14 HET NAG C 203 14 HET NAG B 701 14 HET NAG B 702 14 HET NAG B 703 14 HET NAG B 704 14 HET NAG B 705 14 HET NAG B 706 14 HET NAG B 707 14 HET NAG B 708 14 HET NAG D 201 14 HET NAG D 202 14 HETNAM NAG N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 18(C8 H15 N O6) HELIX 1 AA1 PRO A 167 LEU A 173 5 7 HELIX 2 AA2 LEU A 194 ASN A 200 1 7 HELIX 3 AA3 SER A 238 LEU A 249 1 12 HELIX 4 AA4 ASP A 297 PHE A 302 1 6 HELIX 5 AA5 HIS A 303 VAL A 308 5 6 HELIX 6 AA6 SER A 390 GLY A 395 1 6 HELIX 7 AA7 PHE A 461 LEU A 466 5 6 HELIX 8 AA8 ASP A 534 TYR A 538 5 5 HELIX 9 AA9 ILE A 585 ASN A 595 1 11 HELIX 10 AB1 SER C 103 ALA C 107 5 5 HELIX 11 AB2 PRO B 167 ASN B 172 5 6 HELIX 12 AB3 LEU B 194 GLU B 199 1 6 HELIX 13 AB4 SER B 238 ASN B 248 1 11 HELIX 14 AB5 GLU B 272 GLU B 277 5 6 HELIX 15 AB6 SER B 296 VAL B 300 5 5 HELIX 16 AB7 PHE B 302 ALA B 306 5 5 HELIX 17 AB8 PHE B 461 LEU B 466 5 6 HELIX 18 AB9 ASP B 534 TYR B 538 5 5 HELIX 19 AC1 ILE B 561 LEU B 565 5 5 HELIX 20 AC2 ILE B 585 ASN B 595 1 11 HELIX 21 AC3 PRO B 611 ILE B 615 5 5 HELIX 22 AC4 TYR D 102 ARG D 106 5 5 SHEET 1 AA123 ASN A 57 ASP A 59 0 SHEET 2 AA123 TRP A 81 ASP A 83 1 O TRP A 81 N ILE A 58 SHEET 3 AA123 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82 SHEET 4 AA123 ASN A 129 VAL A 131 1 O VAL A 131 N LEU A 106 SHEET 5 AA123 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130 SHEET 6 AA123 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154 SHEET 7 AA123 SER A 206 ASP A 208 1 O SER A 206 N VAL A 179 SHEET 8 AA123 ILE A 225 ARG A 233 1 O THR A 231 N LEU A 207 SHEET 9 AA123 LEU A 252 GLY A 260 1 O ARG A 256 N HIS A 228 SHEET 10 AA123 THR A 283 LEU A 289 1 O ARG A 288 N LEU A 257 SHEET 11 AA123 SER A 312 ALA A 314 1 O ALA A 314 N LEU A 289 SHEET 12 AA123 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313 SHEET 13 AA123 SER A 353 THR A 357 1 O THR A 355 N ILE A 335 SHEET 14 AA123 TYR A 375 ASP A 377 1 O TYR A 375 N LEU A 354 SHEET 15 AA123 HIS A 401 ASP A 403 1 O ASP A 403 N LEU A 376 SHEET 16 AA123 HIS A 424 ASP A 426 1 O ASP A 426 N LEU A 402 SHEET 17 AA123 TYR A 449 ASP A 451 1 O ASP A 451 N LEU A 425 SHEET 18 AA123 THR A 473 LYS A 475 1 O LYS A 475 N LEU A 450 SHEET 19 AA123 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474 SHEET 20 AA123 LEU A 522 ASN A 524 1 O ASN A 524 N LEU A 499 SHEET 21 AA123 GLU A 546 ALA A 548 1 O GLU A 546 N LEU A 523 SHEET 22 AA123 LYS A 570 TRP A 572 1 O TRP A 572 N LEU A 547 SHEET 23 AA123 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571 SHEET 1 AA2 2 THR A 188 ILE A 189 0 SHEET 2 AA2 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189 SHEET 1 AA3 3 PHE A 385 CYS A 388 0 SHEET 2 AA3 3 ALA A 409 MET A 412 1 O ILE A 411 N PHE A 385 SHEET 3 AA3 3 THR A 431 LYS A 433 1 O THR A 431 N ILE A 410 SHEET 1 AA4 2 LYS A 458 ILE A 459 0 SHEET 2 AA4 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459 SHEET 1 AA5 2 THR A 485 LEU A 486 0 SHEET 2 AA5 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486 SHEET 1 AA6 6 TRP C 23 PHE C 24 0 SHEET 2 AA6 6 ALA C 30 TYR C 36 -1 O TYR C 34 N TRP C 23 SHEET 3 AA6 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA6 6 TYR C 131 ALA C 139 -1 N CYS C 133 O PHE C 151 SHEET 5 AA6 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA6 6 ILE C 85 VAL C 93 -1 O ILE C 85 N VAL C 82 SHEET 1 AA7 3 SER C 45 GLU C 49 0 SHEET 2 AA7 3 THR C 57 PHE C 65 -1 O HIS C 62 N SER C 47 SHEET 3 AA7 3 VAL C 113 PHE C 121 -1 O ILE C 117 N VAL C 61 SHEET 1 AA8 5 ILE B 29 VAL B 32 0 SHEET 2 AA8 5 THR B 36 GLN B 38 -1 O GLN B 38 N ILE B 29 SHEET 3 AA8 5 ASN B 57 ASP B 59 1 O ASP B 59 N TYR B 37 SHEET 4 AA8 5 LEU B 82 ASP B 83 1 O ASP B 83 N ILE B 58 SHEET 5 AA8 5 LEU B 106 ILE B 107 1 O ILE B 107 N LEU B 82 SHEET 1 AA920 ASN B 129 VAL B 131 0 SHEET 2 AA920 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130 SHEET 3 AA920 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154 SHEET 4 AA920 SER B 206 ASP B 208 1 O SER B 206 N VAL B 179 SHEET 5 AA920 ILE B 225 ARG B 233 1 O GLU B 229 N LEU B 207 SHEET 6 AA920 LEU B 252 GLY B 260 1 O HIS B 253 N LEU B 227 SHEET 7 AA920 THR B 283 LEU B 289 1 O GLU B 286 N HIS B 255 SHEET 8 AA920 ALA B 310 ALA B 314 1 O SER B 312 N LEU B 289 SHEET 9 AA920 SER B 332 ILE B 336 1 O SER B 334 N LEU B 313 SHEET 10 AA920 SER B 353 THR B 357 1 O THR B 355 N ILE B 335 SHEET 11 AA920 TYR B 375 ASP B 377 1 O ASP B 377 N LEU B 356 SHEET 12 AA920 HIS B 401 ASP B 403 1 O ASP B 403 N LEU B 376 SHEET 13 AA920 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402 SHEET 14 AA920 TYR B 449 ASP B 451 1 O ASP B 451 N LEU B 425 SHEET 15 AA920 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450 SHEET 16 AA920 PHE B 498 ASP B 500 1 O ASP B 500 N LEU B 474 SHEET 17 AA920 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499 SHEET 18 AA920 GLU B 546 ALA B 548 1 O ALA B 548 N LEU B 523 SHEET 19 AA920 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547 SHEET 20 AA920 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571 SHEET 1 AB1 2 THR B 188 ILE B 189 0 SHEET 2 AB1 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189 SHEET 1 AB2 3 PHE B 385 CYS B 388 0 SHEET 2 AB2 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385 SHEET 3 AB2 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410 SHEET 1 AB3 2 LYS B 458 ILE B 459 0 SHEET 2 AB3 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459 SHEET 1 AB4 2 THR B 485 LEU B 486 0 SHEET 2 AB4 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486 SHEET 1 AB5 2 TRP B 578 ASP B 579 0 SHEET 2 AB5 2 CYS B 605 SER B 606 1 O SER B 606 N TRP B 578 SHEET 1 AB6 6 CYS D 25 ASN D 26 0 SHEET 2 AB6 6 ILE D 31 SER D 33 -1 O ILE D 32 N CYS D 25 SHEET 3 AB6 6 ASN D 150 ILE D 154 -1 O ILE D 154 N ILE D 31 SHEET 4 AB6 6 HIS D 130 ALA D 139 -1 N TYR D 131 O ILE D 153 SHEET 5 AB6 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB6 6 ARG D 90 VAL D 93 -1 O ARG D 90 N LEU D 78 SHEET 1 AB7 4 ILE D 85 GLU D 86 0 SHEET 2 AB7 4 LEU D 74 VAL D 82 -1 N VAL D 82 O ILE D 85 SHEET 3 AB7 4 HIS D 130 ALA D 139 -1 O ILE D 138 N TYR D 75 SHEET 4 AB7 4 GLU D 144 PHE D 147 -1 O LEU D 146 N ALA D 137 SHEET 1 AB8 3 SER D 45 GLU D 49 0 SHEET 2 AB8 3 GLY D 59 GLU D 64 -1 O GLU D 64 N SER D 45 SHEET 3 AB8 3 SER D 116 PHE D 119 -1 O ILE D 117 N VAL D 61 SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.05 SSBOND 2 CYS A 280 CYS A 304 1555 1555 2.05 SSBOND 3 CYS A 388 CYS A 389 1555 1555 2.04 SSBOND 4 CYS A 580 CYS A 605 1555 1555 2.02 SSBOND 5 CYS A 582 CYS A 617 1555 1555 2.04 SSBOND 6 CYS C 25 CYS C 51 1555 1555 2.04 SSBOND 7 CYS C 37 CYS C 148 1555 1555 2.05 SSBOND 8 CYS C 95 CYS C 105 1555 1555 2.03 SSBOND 9 CYS B 28 CYS B 39 1555 1555 2.04 SSBOND 10 CYS B 280 CYS B 304 1555 1555 2.04 SSBOND 11 CYS B 388 CYS B 389 1555 1555 2.02 SSBOND 12 CYS B 580 CYS B 605 1555 1555 2.04 SSBOND 13 CYS D 25 CYS D 51 1555 1555 2.04 SSBOND 14 CYS D 37 CYS D 148 1555 1555 2.03 SSBOND 15 CYS D 95 CYS D 105 1555 1555 2.04 LINK ND2 ASN A 204 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN A 237 C1 NAG A 702 1555 1555 1.44 LINK ND2 ASN A 492 C1 NAG A 703 1555 1555 1.48 LINK ND2 ASN A 524 C1 NAG A 704 1555 1555 1.45 LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.47 LINK ND2 ASN C 150 C1 NAG C 202 1555 1555 1.47 LINK ND2 ASN B 204 C1 NAG B 701 1555 1555 1.46 LINK ND2 ASN B 307 C1 NAG B 707 1555 1555 1.45 LINK ND2 ASN B 492 C1 NAG B 703 1555 1555 1.46 LINK ND2 ASN B 524 C1 NAG B 705 1555 1555 1.47 LINK ND2 ASN D 114 C1 NAG D 202 1555 1555 1.45 LINK ND2 ASN D 150 C1 NAG D 201 1555 1555 1.47 LINK O4 NAG A 704 C1 NAG A 705 1555 1555 1.45 LINK O4 NAG C 202 C1 NAG C 203 1555 1555 1.38 LINK O4 NAG B 701 C1 NAG B 702 1555 1555 1.46 LINK O4 NAG B 703 C1 NAG B 704 1555 1555 1.45 LINK O4 NAG B 705 C1 NAG B 706 1555 1555 1.38 LINK O4 NAG B 707 C1 NAG B 708 1555 1555 1.44 CISPEP 1 CYS A 388 CYS A 389 0 -7.66 CISPEP 2 CYS A 582 PRO A 583 0 7.27 CISPEP 3 GLU C 49 PRO C 50 0 6.28 CISPEP 4 CYS B 388 CYS B 389 0 -17.49 CISPEP 5 CYS B 582 PRO B 583 0 10.43 CISPEP 6 GLU D 49 PRO D 50 0 -2.16 SITE 1 AC1 3 VAL A 177 ASN A 204 HIS A 228 SITE 1 AC2 1 ASN A 237 SITE 1 AC3 1 ASN A 492 SITE 1 AC4 5 SER A 502 LYS A 503 ASN A 524 SER A 526 SITE 2 AC4 5 HIS A 527 SITE 1 AC5 3 VAL B 177 ASN B 204 HIS B 228 SITE 1 AC6 1 ASN B 307 SITE 1 AC7 2 LEU B 466 ASN B 492 SITE 1 AC8 4 SER B 502 LYS B 503 ASN B 524 SER B 526 SITE 1 AC9 3 GLU C 64 THR C 112 ASN C 114 SITE 1 AD1 6 ARG B 584 CYS C 37 ASP C 38 ARG C 132 SITE 2 AD1 6 VAL C 134 ASN C 150 SITE 1 AD2 2 GLU D 64 ASN D 114 SITE 1 AD3 4 CYS D 37 ASP D 38 VAL D 134 ASN D 150 CRYST1 127.956 128.134 277.014 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007815 0.000000 -0.000004 0.00000 SCALE2 0.000000 0.007804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003610 0.00000