HEADER IMMUNE SYSTEM 08-JAN-16 5HG4 OBSLTE 27-APR-16 5HG4 5IJC TITLE THE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/NEOSEPTIN-3 COMPLEX CAVEAT 5HG4 NAG A 703 HAS WRONG CHIRALITY AT ATOM C1 NAG A 706 HAS WRONG CAVEAT 2 5HG4 CHIRALITY AT ATOM C1 NAG C 203 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 5HG4 C1 NAG B 701 HAS WRONG CHIRALITY AT ATOM C1 NAG B 704 HAS CAVEAT 4 5HG4 WRONG CHIRALITY AT ATOM C1 NAG B 706 HAS WRONG CHIRALITY AT CAVEAT 5 5HG4 ATOM C1 NAG B 708 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4,VARIABLE LYMPHOCYTE RECEPTOR B COMPND 3 CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TLR4 ECTODOMAIN (UNP RESIDUES 27-544) + VLRB (UNP RESIDUES COMPND 6 126-200); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 96; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 21-157; COMPND 12 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 10090, 7764; SOURCE 5 GENE: TLR4, LPS, VLRB; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTIE1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: LY96, ESOP1, MD2; SOURCE 14 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTIE1 KEYWDS IMMUNE RESPONSE, PROTEIN COMPLEX, SMALL MOLECULE AGONIST, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.SURAKATTULA,H.HUANG, AUTHOR 2 H.SHI,J.H.CHOI,K.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,H.ZHANG,D.L.BOGER, AUTHOR 3 B.BEUTLER REVDAT 4 27-APR-16 5HG4 1 REVDAT 3 02-MAR-16 5HG4 1 JRNL REVDAT 2 17-FEB-16 5HG4 1 JRNL REVDAT 1 03-FEB-16 5HG4 0 JRNL AUTH Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.M.SURAKATTULA, JRNL AUTH 2 H.HUANG,H.SHI,J.H.CHOI,K.W.WANG,E.M.MORESCO,M.BERGER,X.ZHAN, JRNL AUTH 3 H.ZHANG,D.L.BOGER,B.BEUTLER JRNL TITL TLR4/MD-2 ACTIVATION BY A SYNTHETIC AGONIST WITH NO JRNL TITL 2 SIMILARITY TO LPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E884 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26831104 JRNL DOI 10.1073/PNAS.1525639113 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 71127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2228 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 36.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 462 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.446 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12427 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 11724 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16931 ; 1.857 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 26878 ; 0.866 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1456 ; 7.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 546 ;39.138 ;24.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2107 ;18.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1943 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13793 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2899 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5825 ; 2.977 ; 3.801 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5824 ; 2.976 ; 3.800 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7274 ; 4.766 ; 5.692 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.95900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M LITHIUM REMARK 280 CHLORIDE, 12% PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.27950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 619 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE D 154 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 237 C2 NAG B 703 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE D 154 CA ILE D 154 C 0.161 REMARK 500 ILE D 154 C ILE D 154 O -0.283 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 297 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 383 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG B 337 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 380 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ILE D 154 CA - C - O ANGL. DEV. = -22.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 -167.74 -111.49 REMARK 500 PRO A 33 107.31 -47.55 REMARK 500 ASN A 34 27.04 49.19 REMARK 500 ILE A 35 -47.28 -130.36 REMARK 500 LYS A 43 -12.97 64.37 REMARK 500 LEU A 44 140.36 -34.68 REMARK 500 PRO A 52 -178.87 -57.67 REMARK 500 THR A 55 134.13 -34.42 REMARK 500 PHE A 62 28.48 49.05 REMARK 500 LYS A 66 -38.86 83.04 REMARK 500 TYR A 71 -17.33 77.18 REMARK 500 PHE A 76 68.33 -104.58 REMARK 500 SER A 85 139.79 -36.49 REMARK 500 ARG A 86 66.37 29.17 REMARK 500 GLU A 88 7.51 58.36 REMARK 500 LYS A 95 46.08 39.85 REMARK 500 TRP A 97 41.64 -106.40 REMARK 500 LEU A 100 59.83 -107.94 REMARK 500 GLN A 114 -65.05 79.99 REMARK 500 SER A 117 151.64 -49.89 REMARK 500 PHE A 121 42.32 -102.38 REMARK 500 LEU A 124 75.05 -69.39 REMARK 500 SER A 126 -30.00 71.04 REMARK 500 LYS A 136 16.29 57.99 REMARK 500 LEU A 151 127.85 -33.54 REMARK 500 ASN A 159 -161.14 -119.01 REMARK 500 LEU A 173 70.38 -61.90 REMARK 500 ASN A 184 -165.10 -121.77 REMARK 500 ASN A 200 72.76 -109.69 REMARK 500 HIS A 228 -75.63 -67.86 REMARK 500 THR A 290 -164.00 -110.78 REMARK 500 ALA A 314 119.16 -163.63 REMARK 500 SER A 317 29.10 -74.20 REMARK 500 TRP A 330 124.66 -35.68 REMARK 500 LEU A 348 96.42 -1.05 REMARK 500 LEU A 394 -36.25 -132.14 REMARK 500 GLN A 428 134.66 -31.94 REMARK 500 HIS A 429 9.09 57.32 REMARK 500 PHE A 438 -179.21 -173.42 REMARK 500 PHE A 461 109.63 -172.30 REMARK 500 MET A 476 38.23 -140.91 REMARK 500 ASN A 479 -144.77 -113.46 REMARK 500 ASN A 484 50.92 26.53 REMARK 500 THR A 493 62.23 -112.75 REMARK 500 LEU A 517 57.73 -101.70 REMARK 500 ASN A 528 -163.14 -118.70 REMARK 500 ASN A 552 -143.92 -113.58 REMARK 500 SER A 581 134.62 -37.22 REMARK 500 ASP C 38 20.67 -68.60 REMARK 500 HIS C 39 9.21 -152.63 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 361 SER A 362 133.04 REMARK 500 GLY B 278 LEU B 279 146.83 REMARK 500 SER D 28 ASP D 29 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE D 154 24.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61S A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61S B 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61S B 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61S D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 706 bound REMARK 800 to ASN A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 701 through NAG A 702 bound to ASN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 703 bound REMARK 800 to ASN A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 704 bound REMARK 800 to ASN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 705 bound REMARK 800 to ASN A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 707 through NAG A 708 bound to ASN A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 708 through NAG B 709 bound to ASN B 75 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 701 bound REMARK 800 to ASN B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 702 bound REMARK 800 to ASN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 703 bound REMARK 800 to ASN B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 704 bound REMARK 800 to ASN B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 705 bound REMARK 800 to ASN B 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 706 through NAG B 707 bound to ASN B 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG C 203 bound REMARK 800 to ASN C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG C REMARK 800 201 through NAG C 202 bound to ASN C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG D 201 bound REMARK 800 to ASN D 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG D REMARK 800 202 through NAG D 203 bound to ASN D 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HG3 RELATED DB: PDB REMARK 900 RELATED ID: 5HG6 RELATED DB: PDB DBREF 5HG4 A 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG4 A 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5HG4 C 21 156 UNP Q9JHF9 LY96_MOUSE 21 156 DBREF 5HG4 B 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG4 B 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5HG4 D 21 156 UNP Q9JHF9 LY96_MOUSE 21 156 SEQRES 1 A 593 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 A 593 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 A 593 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 A 593 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 A 593 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 A 593 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 A 593 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 A 593 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 A 593 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 A 593 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 A 593 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 A 593 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 A 593 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 A 593 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 A 593 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 A 593 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 A 593 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 A 593 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 A 593 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 A 593 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 A 593 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 A 593 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 A 593 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 A 593 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 A 593 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 A 593 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 A 593 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 A 593 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 A 593 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 A 593 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 A 593 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 A 593 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 A 593 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 A 593 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 A 593 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 A 593 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 A 593 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 A 593 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 A 593 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 A 593 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 A 593 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 A 593 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 A 593 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 A 593 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 A 593 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 A 593 VAL ARG SER ILE ILE CYS PRO THR SEQRES 1 C 136 GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SER SEQRES 2 C 136 TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER ILE SEQRES 3 C 136 SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN GLY SEQRES 4 C 136 PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU LYS SEQRES 5 C 136 TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER ILE SEQRES 6 C 136 GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY HIS SEQRES 7 C 136 ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY GLU SEQRES 8 C 136 THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY ILE SEQRES 9 C 136 LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU ALA SEQRES 10 C 136 ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU ASN SEQRES 11 C 136 PHE THR ILE ILE HIS ARG SEQRES 1 B 593 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 B 593 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 B 593 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 B 593 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 B 593 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 B 593 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 B 593 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 B 593 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 B 593 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 B 593 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 B 593 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 B 593 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 B 593 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 B 593 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 B 593 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 B 593 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 B 593 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 B 593 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 B 593 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 B 593 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 B 593 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 B 593 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 B 593 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 B 593 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 B 593 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 B 593 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 B 593 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 B 593 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 B 593 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 B 593 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 B 593 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 B 593 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 B 593 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 B 593 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 B 593 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 B 593 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 B 593 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 B 593 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 B 593 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 B 593 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 B 593 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 B 593 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 B 593 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 B 593 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 B 593 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 B 593 VAL ARG SER ILE ILE CYS PRO THR SEQRES 1 D 136 GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SER SEQRES 2 D 136 TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER ILE SEQRES 3 D 136 SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN GLY SEQRES 4 D 136 PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU LYS SEQRES 5 D 136 TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER ILE SEQRES 6 D 136 GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY HIS SEQRES 7 D 136 ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY GLU SEQRES 8 D 136 THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY ILE SEQRES 9 D 136 LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU ALA SEQRES 10 D 136 ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU ASN SEQRES 11 D 136 PHE THR ILE ILE HIS ARG HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG A 705 14 HET NAG A 706 14 HET NAG A 707 14 HET NAG A 708 14 HET 61S A 709 35 HET NAG C 201 14 HET NAG C 202 14 HET NAG C 203 14 HET NAG B 701 14 HET NAG B 702 14 HET NAG B 703 14 HET NAG B 704 14 HET NAG B 705 14 HET NAG B 706 14 HET NAG B 707 14 HET NAG B 708 14 HET NAG B 709 14 HET 61S B 710 35 HET 61S B 711 35 HET NAG D 201 14 HET NAG D 202 14 HET NAG D 203 14 HET 61S D 204 35 HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM 61S TERT-BUTYL (2R)-2-({4-AMINO-3-[2-(4-HYDROXYPHENYL) HETNAM 2 61S ETHYL]BENZOYL}AMINO)-4-PHENYLBUTANOATE FORMUL 5 NAG 23(C8 H15 N O6) FORMUL 11 61S 4(C29 H34 N2 O4) FORMUL 26 HOH *342(H2 O) HELIX 1 AA1 PRO A 167 ASN A 172 5 6 HELIX 2 AA2 LEU A 194 ASN A 200 1 7 HELIX 3 AA3 SER A 238 ASN A 248 1 11 HELIX 4 AA4 GLU A 272 VAL A 282 5 11 HELIX 5 AA5 SER A 296 ALA A 306 5 11 HELIX 6 AA6 SER A 390 LEU A 394 5 5 HELIX 7 AA7 ARG A 434 PHE A 438 5 5 HELIX 8 AA8 ASP A 534 ASN A 539 5 6 HELIX 9 AA9 ILE A 585 ASN A 595 1 11 HELIX 10 AB1 PRO A 611 ILE A 615 5 5 HELIX 11 AB2 TYR C 102 ALA C 107 5 6 HELIX 12 AB3 PRO B 167 ASN B 172 5 6 HELIX 13 AB4 LEU B 194 ASN B 200 1 7 HELIX 14 AB5 SER B 238 ASN B 248 1 11 HELIX 15 AB6 GLU B 272 GLU B 277 5 6 HELIX 16 AB7 SER B 296 VAL B 308 5 13 HELIX 17 AB8 SER B 390 LEU B 394 5 5 HELIX 18 AB9 ARG B 434 PHE B 438 5 5 HELIX 19 AC1 ASP B 534 TYR B 538 5 5 HELIX 20 AC2 ILE B 585 ASN B 595 1 11 HELIX 21 AC3 PRO B 611 ILE B 615 5 5 HELIX 22 AC4 TYR D 102 ALA D 107 5 6 SHEET 1 AA125 ILE A 29 VAL A 32 0 SHEET 2 AA125 THR A 36 GLN A 38 -1 O THR A 36 N VAL A 31 SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37 SHEET 4 AA125 TRP A 81 ASP A 83 1 O TRP A 81 N ILE A 58 SHEET 5 AA125 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82 SHEET 6 AA125 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106 SHEET 7 AA125 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130 SHEET 8 AA125 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154 SHEET 9 AA125 SER A 206 ASP A 208 1 O SER A 206 N VAL A 179 SHEET 10 AA125 LYS A 226 ARG A 233 1 O GLU A 229 N LEU A 207 SHEET 11 AA125 HIS A 253 GLY A 260 1 O HIS A 253 N LEU A 227 SHEET 12 AA125 THR A 283 LEU A 289 1 O GLU A 286 N HIS A 255 SHEET 13 AA125 ALA A 310 ALA A 314 1 O SER A 312 N LEU A 289 SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313 SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335 SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356 SHEET 17 AA125 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376 SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402 SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425 SHEET 20 AA125 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450 SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474 SHEET 22 AA125 LEU A 522 ASN A 524 1 O ASN A 524 N LEU A 499 SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523 SHEET 24 AA125 LYS A 570 TRP A 572 1 O TRP A 572 N LEU A 547 SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571 SHEET 1 AA2 2 ILE A 67 LEU A 68 0 SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68 SHEET 1 AA3 2 THR A 188 ILE A 189 0 SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189 SHEET 1 AA4 4 ILE A 363 SER A 364 0 SHEET 2 AA4 4 LEU A 383 CYS A 388 1 O SER A 384 N ILE A 363 SHEET 3 AA4 4 ALA A 409 MET A 412 1 O ILE A 411 N PHE A 385 SHEET 4 AA4 4 THR A 431 LYS A 433 1 O THR A 431 N ILE A 410 SHEET 1 AA5 2 LYS A 458 ILE A 459 0 SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459 SHEET 1 AA6 2 THR A 485 LEU A 486 0 SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486 SHEET 1 AA7 6 TRP C 23 ASN C 26 0 SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N GLY C 129 O HIS C 155 SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82 SHEET 1 AA8 6 TRP C 23 ASN C 26 0 SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N GLY C 129 O HIS C 155 SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78 SHEET 1 AA9 3 SER C 45 GLU C 49 0 SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O HIS C 62 N SER C 47 SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O ILE C 117 N VAL C 61 SHEET 1 AB125 ILE B 29 VAL B 32 0 SHEET 2 AB125 THR B 36 GLN B 38 -1 O GLN B 38 N ILE B 29 SHEET 3 AB125 ASN B 57 ASP B 59 1 O ASN B 57 N TYR B 37 SHEET 4 AB125 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58 SHEET 5 AB125 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82 SHEET 6 AB125 ASN B 129 VAL B 131 1 O ASN B 129 N LEU B 106 SHEET 7 AB125 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130 SHEET 8 AB125 HIS B 178 ASP B 180 1 O HIS B 178 N LEU B 154 SHEET 9 AB125 SER B 206 ASP B 208 1 O SER B 206 N VAL B 179 SHEET 10 AB125 LYS B 226 ARG B 233 1 O GLU B 229 N LEU B 207 SHEET 11 AB125 HIS B 253 GLY B 260 1 O ILE B 258 N LEU B 232 SHEET 12 AB125 THR B 283 LEU B 289 1 O THR B 283 N VAL B 254 SHEET 13 AB125 ALA B 310 ALA B 314 1 O ALA B 310 N PHE B 287 SHEET 14 AB125 SER B 332 ILE B 336 1 O SER B 334 N LEU B 313 SHEET 15 AB125 SER B 353 THR B 357 1 O THR B 355 N LEU B 333 SHEET 16 AB125 TYR B 375 ASP B 377 1 O ASP B 377 N LEU B 356 SHEET 17 AB125 HIS B 401 ASP B 403 1 O HIS B 401 N LEU B 376 SHEET 18 AB125 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402 SHEET 19 AB125 TYR B 449 ASP B 451 1 O TYR B 449 N LEU B 425 SHEET 20 AB125 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450 SHEET 21 AB125 PHE B 498 ASP B 500 1 O ASP B 500 N LEU B 474 SHEET 22 AB125 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499 SHEET 23 AB125 GLU B 546 ALA B 548 1 O ALA B 548 N LEU B 523 SHEET 24 AB125 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547 SHEET 25 AB125 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571 SHEET 1 AB2 2 ILE B 67 LEU B 68 0 SHEET 2 AB2 2 THR B 91 ILE B 92 1 O THR B 91 N LEU B 68 SHEET 1 AB3 2 THR B 188 ILE B 189 0 SHEET 2 AB3 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189 SHEET 1 AB4 3 PHE B 385 CYS B 388 0 SHEET 2 AB4 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385 SHEET 3 AB4 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410 SHEET 1 AB5 2 LYS B 458 ILE B 459 0 SHEET 2 AB5 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459 SHEET 1 AB6 2 THR B 485 LEU B 486 0 SHEET 2 AB6 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486 SHEET 1 AB7 6 TRP D 23 ASN D 26 0 SHEET 2 AB7 6 ALA D 30 TYR D 36 -1 O ILE D 32 N CYS D 25 SHEET 3 AB7 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB7 6 GLY D 129 ALA D 139 -1 N CYS D 133 O PHE D 151 SHEET 5 AB7 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB7 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82 SHEET 1 AB8 6 TRP D 23 ASN D 26 0 SHEET 2 AB8 6 ALA D 30 TYR D 36 -1 O ILE D 32 N CYS D 25 SHEET 3 AB8 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB8 6 GLY D 129 ALA D 139 -1 N CYS D 133 O PHE D 151 SHEET 5 AB8 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB8 6 ARG D 90 VAL D 93 -1 O GLU D 92 N PHE D 76 SHEET 1 AB9 3 SER D 45 GLU D 49 0 SHEET 2 AB9 3 GLY D 56 PHE D 65 -1 O PHE D 60 N GLU D 49 SHEET 3 AB9 3 VAL D 113 GLU D 122 -1 O ILE D 117 N VAL D 61 SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.06 SSBOND 2 CYS A 280 CYS A 304 1555 1555 2.07 SSBOND 3 CYS A 580 CYS A 605 1555 1555 2.07 SSBOND 4 CYS A 582 CYS A 617 1555 1555 2.08 SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.05 SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.11 SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.03 SSBOND 8 CYS B 28 CYS B 39 1555 1555 2.07 SSBOND 9 CYS B 280 CYS B 304 1555 1555 2.07 SSBOND 10 CYS B 388 CYS B 389 1555 1555 2.11 SSBOND 11 CYS B 580 CYS B 605 1555 1555 2.06 SSBOND 12 CYS B 582 CYS B 617 1555 1555 2.11 SSBOND 13 CYS D 25 CYS D 51 1555 1555 2.08 SSBOND 14 CYS D 37 CYS D 148 1555 1555 2.10 SSBOND 15 CYS D 95 CYS D 105 1555 1555 2.02 LINK ND2 ASN A 172 C1 NAG A 706 1555 1555 1.46 LINK ND2 ASN A 204 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 237 C1 NAG A 703 1555 1555 1.43 LINK ND2 ASN A 307 C1 NAG A 704 1555 1555 1.46 LINK ND2 ASN A 492 C1 NAG A 705 1555 1555 1.47 LINK ND2 ASN A 524 C1 NAG A 707 1555 1555 1.46 LINK ND2 ASN C 114 C1 NAG C 203 1555 1555 1.44 LINK ND2 ASN C 150 C1 NAG C 201 1555 1555 1.45 LINK ND2 ASN B 75 C1 NAG B 708 1555 1555 1.44 LINK ND2 ASN B 172 C1 NAG B 701 1555 1555 1.48 LINK ND2 ASN B 204 C1 NAG B 702 1555 1555 1.45 LINK ND2 ASN B 237 C1 NAG B 703 1555 1555 1.44 LINK ND2 ASN B 307 C1 NAG B 704 1555 1555 1.46 LINK ND2 ASN B 492 C1 NAG B 705 1555 1555 1.48 LINK ND2 ASN B 524 C1 NAG B 706 1555 1555 1.41 LINK ND2 ASN D 114 C1 NAG D 201 1555 1555 1.47 LINK ND2 ASN D 150 C1 NAG D 202 1555 1555 1.44 LINK O4 NAG A 701 C1 NAG A 702 1555 1555 1.42 LINK O4 NAG A 707 C1 NAG A 708 1555 1555 1.45 LINK O4 NAG C 201 C1 NAG C 202 1555 1555 1.43 LINK O4 NAG B 706 C1 NAG B 707 1555 1555 1.45 LINK O4 NAG B 708 C1 NAG B 709 1555 1555 1.44 LINK O4 NAG D 202 C1 NAG D 203 1555 1555 1.43 CISPEP 1 CYS A 388 CYS A 389 0 -2.61 CISPEP 2 CYS A 582 PRO A 583 0 4.43 CISPEP 3 GLU C 49 PRO C 50 0 -5.23 CISPEP 4 CYS B 388 CYS B 389 0 -4.55 CISPEP 5 CYS B 582 PRO B 583 0 -5.75 CISPEP 6 GLU D 49 PRO D 50 0 2.15 SITE 1 AC1 9 SER A 413 PHE A 438 SER A 439 ILE D 52 SITE 2 AC1 9 VAL D 82 PHE D 121 PHE D 126 PRO D 127 SITE 3 AC1 9 61S D 204 SITE 1 AC2 10 SER B 413 PHE B 438 SER B 439 61S B 711 SITE 2 AC2 10 HOH B 866 ILE C 52 LEU C 54 PHE C 121 SITE 3 AC2 10 ILE C 124 PRO C 127 SITE 1 AC3 6 ARG B 434 GLU B 437 61S B 710 HOH B 900 SITE 2 AC3 6 ARG C 90 PHE C 126 SITE 1 AC4 6 ARG A 434 GLU A 437 61S A 709 ARG D 90 SITE 2 AC4 6 PHE D 126 HOH D 306 SITE 1 AC5 2 ASN A 172 HOH A 843 SITE 1 AC6 3 ASN A 204 HIS A 228 ARG A 256 SITE 1 AC7 4 ASN A 237 ARG A 266 HOH A 826 HOH A 847 SITE 1 AC8 4 ASN A 307 LYS A 329 HOH A 886 HOH A 925 SITE 1 AC9 5 ASN A 492 HOH A 804 HOH A 806 HOH A 820 SITE 2 AC9 5 HOH A 941 SITE 1 AD1 5 SER A 502 LYS A 503 ASN A 524 SER A 526 SITE 2 AD1 5 HOH A 868 SITE 1 AD2 3 TYR A 71 ASP B 49 ASN B 75 SITE 1 AD3 2 ASN B 172 HOH B 830 SITE 1 AD4 1 ASN B 204 SITE 1 AD5 1 ASN B 237 SITE 1 AD6 1 ASN B 307 SITE 1 AD7 3 THR B 469 ASN B 492 HOH B 833 SITE 1 AD8 7 SER B 502 LYS B 503 ASN B 524 SER B 526 SITE 2 AD8 7 TRP B 572 HOH B 887 HOH B 899 SITE 1 AD9 1 ASN C 114 SITE 1 AE1 3 ASP C 38 ARG C 132 ASN C 150 SITE 1 AE2 3 GLU D 64 ASN D 114 HOH D 331 SITE 1 AE3 5 CYS D 37 ASP D 38 ARG D 132 ASN D 150 SITE 2 AE3 5 HOH D 316 CRYST1 70.752 148.559 131.720 90.00 98.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014134 0.000000 0.002063 0.00000 SCALE2 0.000000 0.006731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007672 0.00000