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binding site for residue LP5 C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 D 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 701 through NAG A 702 bound to ASN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 703 bound REMARK 800 to ASN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 704 bound REMARK 800 to ASN A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A REMARK 800 705 through NAG A 706 bound to ASN A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 701 through NAG B 702 bound to ASN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 703 through NAG B 704 bound to ASN B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 705 bound REMARK 800 to ASN B 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B REMARK 800 706 through NAG B 707 bound to ASN B 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG C 201 bound REMARK 800 to ASN C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG C REMARK 800 202 through NAG C 203 bound to ASN C 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG D 803 bound REMARK 800 to ASN D 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG D REMARK 800 801 through NAG D 802 bound to ASN D 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 C 204 and DAO C REMARK 800 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 C 204 and MYR C REMARK 800 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 D 804 and DAO D REMARK 800 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 D 804 and MYR D REMARK 800 807 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HG3 RELATED DB: PDB REMARK 900 RELATED ID: 5HG4 RELATED DB: PDB DBREF 5HG6 A 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG6 A 545 618 UNP Q4G1L2 Q4G1L2_EPTBU 126 199 DBREF 5HG6 C 20 156 UNP Q9JHF9 LY96_MOUSE 20 156 DBREF 5HG6 D 20 156 UNP Q9JHF9 LY96_MOUSE 20 156 DBREF 5HG6 B 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544 DBREF 5HG6 B 545 618 UNP Q4G1L2 Q4G1L2_EPTBU 126 199 SEQRES 1 A 592 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 A 592 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 A 592 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 A 592 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 A 592 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 A 592 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 A 592 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 A 592 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 A 592 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 A 592 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 A 592 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 A 592 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 A 592 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 A 592 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 A 592 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 A 592 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 A 592 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 A 592 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 A 592 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 A 592 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 A 592 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 A 592 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 A 592 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 A 592 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 A 592 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 A 592 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 A 592 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 A 592 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 A 592 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 A 592 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 A 592 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 A 592 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 A 592 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 A 592 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 A 592 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 A 592 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 A 592 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 A 592 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 A 592 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 A 592 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 A 592 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 A 592 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 A 592 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 A 592 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 A 592 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 A 592 VAL ARG SER ILE ILE CYS PRO SEQRES 1 C 137 LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SEQRES 2 C 137 SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER SEQRES 3 C 137 ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN SEQRES 4 C 137 GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU SEQRES 5 C 137 LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER SEQRES 6 C 137 ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY SEQRES 7 C 137 HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY SEQRES 8 C 137 GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY SEQRES 9 C 137 ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU SEQRES 10 C 137 ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU SEQRES 11 C 137 ASN PHE THR ILE ILE HIS ARG SEQRES 1 D 137 LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE SEQRES 2 D 137 SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER SEQRES 3 D 137 ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN SEQRES 4 D 137 GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU SEQRES 5 D 137 LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER SEQRES 6 D 137 ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY SEQRES 7 D 137 HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY SEQRES 8 D 137 GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY SEQRES 9 D 137 ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU SEQRES 10 D 137 ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU SEQRES 11 D 137 ASN PHE THR ILE ILE HIS ARG SEQRES 1 B 592 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS SEQRES 2 B 592 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO SEQRES 3 B 592 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU SEQRES 4 B 592 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU SEQRES 5 B 592 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR SEQRES 6 B 592 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER SEQRES 7 B 592 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER SEQRES 8 B 592 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU SEQRES 9 B 592 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE SEQRES 10 B 592 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL SEQRES 11 B 592 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR SEQRES 12 B 592 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER SEQRES 13 B 592 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN SEQRES 14 B 592 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP SEQRES 15 B 592 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA SEQRES 16 B 592 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY SEQRES 17 B 592 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN SEQRES 18 B 592 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY SEQRES 19 B 592 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO SEQRES 20 B 592 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU SEQRES 21 B 592 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE SEQRES 22 B 592 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER SEQRES 23 B 592 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO SEQRES 24 B 592 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS SEQRES 25 B 592 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU SEQRES 26 B 592 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER SEQRES 27 B 592 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP SEQRES 28 B 592 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER SEQRES 29 B 592 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP SEQRES 30 B 592 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE SEQRES 31 B 592 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS SEQRES 32 B 592 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU SEQRES 33 B 592 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR SEQRES 34 B 592 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU SEQRES 35 B 592 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE SEQRES 36 B 592 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR SEQRES 37 B 592 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU SEQRES 38 B 592 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU SEQRES 39 B 592 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU SEQRES 40 B 592 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU SEQRES 41 B 592 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP SEQRES 42 B 592 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP SEQRES 43 B 592 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE SEQRES 44 B 592 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS SEQRES 45 B 592 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO SEQRES 46 B 592 VAL ARG SER ILE ILE CYS PRO HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG A 705 14 HET NAG A 706 14 HET NAG C 201 14 HET NAG C 202 14 HET NAG C 203 14 HET LP4 C 204 45 HET LP5 C 205 48 HET DAO C 206 13 HET MYR C 207 15 HET NAG D 801 14 HET NAG D 802 14 HET NAG D 803 14 HET LP4 D 804 45 HET LP5 D 805 48 HET DAO D 806 13 HET MYR D 807 15 HET NAG B 701 14 HET NAG B 702 14 HET NAG B 703 14 HET NAG B 704 14 HET NAG B 705 14 HET NAG B 706 14 HET NAG B 707 14 HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3- HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D- HETNAM 3 LP4 GLUCOPYRANOSE HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM DAO LAURIC ACID HETNAM MYR MYRISTIC ACID FORMUL 5 NAG 19(C8 H15 N O6) FORMUL 11 LP4 2(C34 H66 N O12 P) FORMUL 12 LP5 2(C34 H66 N O12 P) FORMUL 13 DAO 2(C12 H24 O2) FORMUL 14 MYR 2(C14 H28 O2) FORMUL 25 HOH *235(H2 O) HELIX 1 AA1 PRO A 167 ASN A 172 5 6 HELIX 2 AA2 LEU A 194 GLU A 199 1 6 HELIX 3 AA3 SER A 238 ASN A 248 1 11 HELIX 4 AA4 GLU A 272 GLU A 277 5 6 HELIX 5 AA5 SER A 296 ALA A 306 5 11 HELIX 6 AA6 SER A 390 GLY A 395 1 6 HELIX 7 AA7 PHE A 461 LEU A 466 5 6 HELIX 8 AA8 ILE A 585 ASN A 595 1 11 HELIX 9 AA9 PRO A 611 ILE A 615 5 5 HELIX 10 AB1 TYR C 102 ALA C 107 5 6 HELIX 11 AB2 TYR D 102 ALA D 107 5 6 HELIX 12 AB3 PRO B 167 ASN B 172 5 6 HELIX 13 AB4 SER B 238 ASN B 248 1 11 HELIX 14 AB5 GLU B 272 GLU B 277 5 6 HELIX 15 AB6 ASP B 297 PHE B 302 1 6 HELIX 16 AB7 HIS B 303 ALA B 306 5 4 HELIX 17 AB8 SER B 390 GLY B 395 1 6 HELIX 18 AB9 ASP B 534 TYR B 538 5 5 HELIX 19 AC1 ILE B 585 SER B 596 1 12 SHEET 1 AA125 GLU A 30 VAL A 32 0 SHEET 2 AA125 THR A 36 GLN A 38 -1 O THR A 36 N VAL A 31 SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37 SHEET 4 AA125 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58 SHEET 5 AA125 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82 SHEET 6 AA125 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106 SHEET 7 AA125 LYS A 153 ASN A 155 1 O LYS A 153 N LEU A 130 SHEET 8 AA125 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154 SHEET 9 AA125 LEU A 207 ASP A 208 1 O ASP A 208 N VAL A 179 SHEET 10 AA125 LYS A 226 ARG A 233 1 O THR A 231 N LEU A 207 SHEET 11 AA125 HIS A 253 GLY A 260 1 O HIS A 253 N LEU A 227 SHEET 12 AA125 THR A 283 LEU A 289 1 O THR A 283 N VAL A 254 SHEET 13 AA125 ALA A 310 ALA A 314 1 O SER A 312 N LEU A 289 SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313 SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335 SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356 SHEET 17 AA125 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376 SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402 SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425 SHEET 20 AA125 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450 SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474 SHEET 22 AA125 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499 SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523 SHEET 24 AA125 LYS A 570 TRP A 572 1 O LYS A 570 N LEU A 547 SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571 SHEET 1 AA2 2 ILE A 67 LEU A 68 0 SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68 SHEET 1 AA3 2 THR A 188 ILE A 189 0 SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189 SHEET 1 AA4 4 ILE A 363 SER A 364 0 SHEET 2 AA4 4 LEU A 383 CYS A 388 1 O SER A 384 N ILE A 363 SHEET 3 AA4 4 ALA A 409 MET A 412 1 O ILE A 411 N CYS A 388 SHEET 4 AA4 4 THR A 431 LYS A 433 1 O LYS A 433 N MET A 412 SHEET 1 AA5 2 LYS A 458 ILE A 459 0 SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459 SHEET 1 AA6 2 THR A 485 LEU A 486 0 SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486 SHEET 1 AA7 6 TRP C 23 ASN C 26 0 SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147 SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82 SHEET 1 AA8 6 TRP C 23 ASN C 26 0 SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147 SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78 SHEET 1 AA9 3 SER C 45 GLU C 49 0 SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O HIS C 62 N SER C 47 SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O THR C 115 N VAL C 63 SHEET 1 AB1 6 GLN D 21 ASN D 26 0 SHEET 2 AB1 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22 SHEET 3 AB1 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB1 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153 SHEET 5 AB1 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB1 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82 SHEET 1 AB2 6 GLN D 21 ASN D 26 0 SHEET 2 AB2 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22 SHEET 3 AB2 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB2 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153 SHEET 5 AB2 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB2 6 ARG D 90 VAL D 93 -1 O ARG D 90 N LEU D 78 SHEET 1 AB3 3 SER D 45 SER D 47 0 SHEET 2 AB3 3 GLY D 56 PHE D 65 -1 O HIS D 62 N SER D 47 SHEET 3 AB3 3 VAL D 113 GLU D 122 -1 O ILE D 117 N VAL D 61 SHEET 1 AB410 ASN B 57 ASP B 59 0 SHEET 2 AB410 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58 SHEET 3 AB410 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82 SHEET 4 AB410 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106 SHEET 5 AB410 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130 SHEET 6 AB410 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154 SHEET 7 AB410 LEU B 205 ASP B 208 1 O SER B 206 N VAL B 179 SHEET 8 AB410 LYS B 226 ARG B 233 1 O HIS B 228 N LEU B 205 SHEET 9 AB410 HIS B 253 GLY B 260 1 O ARG B 256 N HIS B 228 SHEET 10 AB410 THR B 283 LEU B 289 1 O THR B 283 N VAL B 254 SHEET 1 AB5 2 THR B 188 ILE B 189 0 SHEET 2 AB5 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189 SHEET 1 AB613 MET B 311 ALA B 314 0 SHEET 2 AB613 LEU B 333 ILE B 336 1 O SER B 334 N LEU B 313 SHEET 3 AB613 SER B 353 THR B 357 1 O THR B 355 N ILE B 335 SHEET 4 AB613 TYR B 375 ASP B 377 1 O TYR B 375 N LEU B 354 SHEET 5 AB613 HIS B 401 ASP B 403 1 O HIS B 401 N LEU B 376 SHEET 6 AB613 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402 SHEET 7 AB613 TYR B 449 ASP B 451 1 O TYR B 449 N LEU B 425 SHEET 8 AB613 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450 SHEET 9 AB613 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474 SHEET 10 AB613 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499 SHEET 11 AB613 GLU B 546 ALA B 548 1 O GLU B 546 N LEU B 523 SHEET 12 AB613 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547 SHEET 13 AB613 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571 SHEET 1 AB7 3 PHE B 385 CYS B 388 0 SHEET 2 AB7 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385 SHEET 3 AB7 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410 SHEET 1 AB8 2 LYS B 458 ILE B 459 0 SHEET 2 AB8 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459 SHEET 1 AB9 2 THR B 485 LEU B 486 0 SHEET 2 AB9 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486 SSBOND 1 CYS A 280 CYS A 304 1555 1555 2.05 SSBOND 2 CYS A 388 CYS A 389 1555 1555 2.03 SSBOND 3 CYS A 580 CYS A 605 1555 1555 2.02 SSBOND 4 CYS A 582 CYS A 617 1555 1555 2.07 SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.07 SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.09 SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.01 SSBOND 8 CYS D 25 CYS D 51 1555 1555 2.03 SSBOND 9 CYS D 37 CYS D 148 1555 1555 2.10 SSBOND 10 CYS D 95 CYS D 105 1555 1555 2.04 SSBOND 11 CYS B 28 CYS B 39 1555 1555 2.05 SSBOND 12 CYS B 280 CYS B 304 1555 1555 2.04 SSBOND 13 CYS B 388 CYS B 389 1555 1555 2.04 SSBOND 14 CYS B 580 CYS B 605 1555 1555 2.05 SSBOND 15 CYS B 582 CYS B 617 1555 1555 2.06 LINK ND2 ASN A 204 C1 NAG A 701 1555 1555 1.46 LINK ND2 ASN A 307 C1 NAG A 703 1555 1555 1.47 LINK ND2 ASN A 492 C1 NAG A 704 1555 1555 1.46 LINK ND2 ASN A 524 C1 NAG A 705 1555 1555 1.47 LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.45 LINK ND2 ASN C 150 C1 NAG C 202 1555 1555 1.42 LINK ND2 ASN D 114 C1 NAG D 803 1555 1555 1.47 LINK ND2 ASN D 150 C1 NAG D 801 1555 1555 1.46 LINK ND2 ASN B 204 C1 NAG B 701 1555 1555 1.47 LINK ND2 ASN B 307 C1 NAG B 703 1555 1555 1.45 LINK ND2 ASN B 492 C1 NAG B 705 1555 1555 1.47 LINK ND2 ASN B 524 C1 NAG B 706 1555 1555 1.45 LINK O4 NAG A 701 C1 NAG A 702 1555 1555 1.44 LINK O4 NAG A 705 C1 NAG A 706 1555 1555 1.42 LINK O4 NAG C 202 C1 NAG C 203 1555 1555 1.44 LINK O43 LP4 C 204 C1 MYR C 207 1555 1555 1.35 LINK O44 LP4 C 204 C1 DAO C 206 1555 1555 1.38 LINK O4 NAG D 801 C1 NAG D 802 1555 1555 1.47 LINK O43 LP4 D 804 C1 MYR D 807 1555 1555 1.37 LINK O44 LP4 D 804 C1 DAO D 806 1555 1555 1.35 LINK O4 NAG B 701 C1 NAG B 702 1555 1555 1.46 LINK O4 NAG B 703 C1 NAG B 704 1555 1555 1.45 LINK O4 NAG B 706 C1 NAG B 707 1555 1555 1.46 CISPEP 1 HIS A 98 GLY A 99 0 2.92 CISPEP 2 CYS A 388 CYS A 389 0 -23.06 CISPEP 3 CYS A 582 PRO A 583 0 4.86 CISPEP 4 GLU C 49 PRO C 50 0 -5.36 CISPEP 5 GLU D 49 PRO D 50 0 -6.71 CISPEP 6 CYS B 388 CYS B 389 0 -9.20 CISPEP 7 CYS B 582 PRO B 583 0 6.02 SITE 1 AC1 13 SER B 413 ARG B 434 VAL C 82 LEU C 87 SITE 2 AC1 13 ARG C 90 PHE C 121 GLU C 122 GLY C 123 SITE 3 AC1 13 ILE C 124 CYS C 133 LP4 C 204 DAO C 206 SITE 4 AC1 13 HOH C 314 SITE 1 AC2 11 SER A 413 HOH A 882 LEU D 87 ARG D 90 SITE 2 AC2 11 PHE D 121 GLU D 122 GLY D 123 ILE D 124 SITE 3 AC2 11 PHE D 151 LP4 D 804 DAO D 806 SITE 1 AC3 4 ASN A 204 HIS A 228 ARG A 256 HOH A 833 SITE 1 AC4 1 ASN A 307 SITE 1 AC5 5 LEU A 466 ASN A 492 HOH A 856 HOH A 870 SITE 2 AC5 5 HOH A 881 SITE 1 AC6 6 SER A 502 LYS A 503 ASN A 524 SER A 526 SITE 2 AC6 6 TRP A 572 HOH A 837 SITE 1 AC7 4 VAL B 177 ASN B 204 HIS B 228 ARG B 256 SITE 1 AC8 3 HIS B 303 ASN B 307 HOH B 816 SITE 1 AC9 2 ASN B 492 HOH B 853 SITE 1 AD1 9 SER B 502 LYS B 503 ASN B 524 SER B 526 SITE 2 AD1 9 HIS B 527 TRP B 572 HOH B 804 HOH B 844 SITE 3 AD1 9 HOH B 861 SITE 1 AD2 3 GLU C 64 ASN C 114 HOH C 301 SITE 1 AD3 3 ASP C 38 ARG C 132 ASN C 150 SITE 1 AD4 4 GLU D 64 ASN D 114 HOH D 902 HOH D 910 SITE 1 AD5 4 ASP D 38 HIS D 39 ARG D 132 ASN D 150 SITE 1 AD6 9 LYS A 263 VAL C 61 LEU C 78 GLU C 92 SITE 2 AD6 9 TYR C 102 SER C 120 LP5 C 205 MYR C 207 SITE 3 AD6 9 HOH C 308 SITE 1 AD7 9 LYS A 263 VAL C 61 PHE C 76 TYR C 102 SITE 2 AD7 9 SER C 120 PHE C 151 LP5 C 205 DAO C 206 SITE 3 AD7 9 HOH C 308 SITE 1 AD8 11 LYS B 263 ILE D 52 LEU D 78 ARG D 90 SITE 2 AD8 11 GLU D 92 ILE D 117 PHE D 119 SER D 120 SITE 3 AD8 11 TYR D 131 LP5 D 805 MYR D 807 SITE 1 AD9 10 LYS B 263 ILE D 52 PHE D 76 ILE D 117 SITE 2 AD9 10 PHE D 119 SER D 120 ALA D 135 PHE D 151 SITE 3 AD9 10 LP5 D 805 DAO D 806 CRYST1 66.843 145.737 136.195 90.00 100.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014960 0.000000 0.002818 0.00000 SCALE2 0.000000 0.006862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007472 0.00000