HEADER IMMUNE SYSTEM 08-JAN-16 5HG6
OBSLTE 27-APR-16 5HG6 5IJD
TITLE THE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LIPID A COMPLEX
CAVEAT 5HG6 NAG A 702 HAS WRONG CHIRALITY AT ATOM C1 NAG C 202 HAS WRONG
CAVEAT 2 5HG6 CHIRALITY AT ATOM C1 NAG D 802 HAS WRONG CHIRALITY AT ATOM
CAVEAT 3 5HG6 C1 NAG B 703 HAS WRONG CHIRALITY AT ATOM C1 NAG B 704 HAS
CAVEAT 4 5HG6 WRONG CHIRALITY AT ATOM C1 NAG B 705 HAS WRONG CHIRALITY AT
CAVEAT 5 5HG6 ATOM C1 NAG B 707 HAS WRONG CHIRALITY AT ATOM C1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4,VARIABLE LYMPHOCYTE RECEPTOR B
COMPND 3 CHIMERA;
COMPND 4 CHAIN: A, B;
COMPND 5 FRAGMENT: TLR4 ECTODOMAIN (UNP RESIDUES 27-544) + VLRB (UNP RESIDUES
COMPND 6 126-199);
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 96;
COMPND 10 CHAIN: C, D;
COMPND 11 FRAGMENT: UNP RESIDUES 20-157;
COMPND 12 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI;
SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH;
SOURCE 4 ORGANISM_TAXID: 10090, 7764;
SOURCE 5 GENE: TLR4, LPS, VLRB;
SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTIE1;
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 11 ORGANISM_COMMON: MOUSE;
SOURCE 12 ORGANISM_TAXID: 10090;
SOURCE 13 GENE: LY96, ESOP1, MD2;
SOURCE 14 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1;
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 266783;
SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTIE1
KEYWDS IMMUNE RESPONSE, PROTEIN COMPLEX, NATURAL AGONIST, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.SURAKATTULA,H.HUANG,
AUTHOR 2 H.SHI,J.H.CHOI,K.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,H.ZHANG,D.L.BOGER,
AUTHOR 3 B.BEUTLER
REVDAT 4 27-APR-16 5HG6 1
REVDAT 3 02-MAR-16 5HG6 1 JRNL
REVDAT 2 17-FEB-16 5HG6 1 JRNL
REVDAT 1 03-FEB-16 5HG6 0
JRNL AUTH Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.M.SURAKATTULA,
JRNL AUTH 2 H.HUANG,H.SHI,J.H.CHOI,K.W.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,
JRNL AUTH 3 H.ZHANG,D.L.BOGER,B.BEUTLER
JRNL TITL TLR4/MD-2 ACTIVATION BY A SYNTHETIC AGONIST WITH NO
JRNL TITL 2 SIMILARITY TO LPS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E884 2016
JRNL REFN ESSN 1091-6490
JRNL PMID 26831104
JRNL DOI 10.1073/PNAS.1525639113
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0032
REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 77.2
REMARK 3 NUMBER OF REFLECTIONS : 52860
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.234
REMARK 3 R VALUE (WORKING SET) : 0.232
REMARK 3 FREE R VALUE : 0.306
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600
REMARK 3 FREE R VALUE TEST SET COUNT : 1978
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1411
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.92
REMARK 3 BIN R VALUE (WORKING SET) : 0.3590
REMARK 3 BIN FREE R VALUE SET COUNT : 53
REMARK 3 BIN FREE R VALUE : 0.4730
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 11637
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 508
REMARK 3 SOLVENT ATOMS : 235
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.43
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.19000
REMARK 3 B22 (A**2) : -0.53000
REMARK 3 B33 (A**2) : 0.02000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 1.65000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 1.330
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.225
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.818
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12451 ; 0.013 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 11886 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16900 ; 1.820 ; 2.002
REMARK 3 BOND ANGLES OTHERS (DEGREES): 27346 ; 0.871 ; 3.002
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1454 ; 8.032 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 545 ;37.306 ;24.716
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2110 ;20.179 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;21.275 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1944 ; 0.093 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13625 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 2834 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5822 ; 2.549 ; 4.001
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5821 ; 2.548 ; 4.001
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7271 ; 4.304 ; 5.991
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5HG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-16.
REMARK 100 THE DEPOSITION ID IS D_1000216982.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68561
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75
REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1
REMARK 200 DATA REDUNDANCY IN SHELL : 3.40
REMARK 200 R MERGE FOR SHELL (I) : 0.92200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.73
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M LITHIUM
REMARK 280 CHLORIDE, 14% PEG8000, 2.5% PEG400, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.86850
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31780 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8480 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31480 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 34.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO A 27
REMARK 465 CYS A 28
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 C1 LP4 D 804 O6 LP5 D 805 1.87
REMARK 500 O43 LP4 C 204 O1 MYR C 207 2.05
REMARK 500 O5 LP4 C 204 O6 LP5 C 205 2.05
REMARK 500 O ASN A 479 O HOH A 801 2.09
REMARK 500 O SER A 117 N GLY A 119 2.10
REMARK 500 ND1 HIS B 255 OD2 ASP B 285 2.12
REMARK 500 C1 LP4 C 204 O6 LP5 C 205 2.16
REMARK 500 O PRO D 127 OH TYR D 131 2.16
REMARK 500 O PRO C 127 OH TYR C 131 2.17
REMARK 500 ND2 ASN B 492 O5 NAG B 705 2.19
REMARK 500 O PRO B 52 OG1 THR B 55 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O GLN A 540 NH2 ARG B 519 1655 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 33 105.11 -47.11
REMARK 500 MET A 40 153.55 -45.27
REMARK 500 ASP A 41 65.65 27.44
REMARK 500 PRO A 52 155.50 -49.99
REMARK 500 LEU A 65 -49.88 -132.00
REMARK 500 LYS A 66 -29.46 67.01
REMARK 500 ASN A 75 -76.13 -63.17
REMARK 500 PHE A 76 96.91 -21.37
REMARK 500 SER A 77 -18.15 -154.93
REMARK 500 LEU A 100 -89.78 65.70
REMARK 500 HIS A 101 -19.84 63.76
REMARK 500 PRO A 112 44.33 -73.59
REMARK 500 PRO A 118 45.12 -54.78
REMARK 500 SER A 120 -48.36 -139.23
REMARK 500 PHE A 121 33.25 -71.83
REMARK 500 THR A 125 -31.64 -39.92
REMARK 500 LYS A 136 -6.74 62.76
REMARK 500 PRO A 144 49.73 -75.00
REMARK 500 ILE A 145 50.00 -116.92
REMARK 500 ILE A 161 124.31 -39.12
REMARK 500 LYS A 165 115.12 -31.78
REMARK 500 PRO A 167 159.69 -47.74
REMARK 500 LEU A 173 59.59 -99.68
REMARK 500 THR A 174 2.37 -65.46
REMARK 500 ASN A 200 49.62 -162.50
REMARK 500 PRO A 201 4.58 -67.05
REMARK 500 LEU A 232 74.88 -116.49
REMARK 500 ASN A 248 36.06 -93.46
REMARK 500 ALA A 250 133.74 -36.62
REMARK 500 ASP A 264 32.48 -91.99
REMARK 500 ILE A 275 -13.52 -43.64
REMARK 500 THR A 290 -169.00 -127.02
REMARK 500 ASP A 297 -39.27 -36.85
REMARK 500 ALA A 314 113.09 -161.80
REMARK 500 SER A 317 31.61 -67.73
REMARK 500 GLU A 322 -73.40 -116.29
REMARK 500 CYS A 338 -166.05 -104.65
REMARK 500 LEU A 348 105.82 -50.07
REMARK 500 PHE A 385 84.94 -163.90
REMARK 500 SER A 413 -32.04 -133.11
REMARK 500 ASN A 415 56.02 -110.93
REMARK 500 GLN A 428 123.87 -25.49
REMARK 500 LEU A 468 58.33 -91.60
REMARK 500 MET A 476 44.17 -145.93
REMARK 500 ASN A 479 -146.97 -116.89
REMARK 500 ASN A 484 44.50 39.34
REMARK 500 GLN A 505 27.24 49.69
REMARK 500 SER A 510 158.66 -42.61
REMARK 500 TRP A 511 -88.47 -63.35
REMARK 500 GLN A 540 -2.84 60.40
REMARK 500
REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLY A 278 LEU A 279 143.46
REMARK 500 GLY A 361 SER A 362 142.08
REMARK 500 THR A 493 THR A 494 -149.99
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH C 329 DISTANCE = 6.26 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 LP4 C 204
REMARK 610 LP4 D 804
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 C 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LP5 D 805
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A
REMARK 800 701 through NAG A 702 bound to ASN A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 703 bound
REMARK 800 to ASN A 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG A 704 bound
REMARK 800 to ASN A 492
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG A
REMARK 800 705 through NAG A 706 bound to ASN A 524
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B
REMARK 800 701 through NAG B 702 bound to ASN B 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B
REMARK 800 703 through NAG B 704 bound to ASN B 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG B 705 bound
REMARK 800 to ASN B 492
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG B
REMARK 800 706 through NAG B 707 bound to ASN B 524
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG C 201 bound
REMARK 800 to ASN C 114
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG C
REMARK 800 202 through NAG C 203 bound to ASN C 150
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG D 803 bound
REMARK 800 to ASN D 114
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues NAG D
REMARK 800 801 through NAG D 802 bound to ASN D 150
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 C 204 and DAO C
REMARK 800 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 C 204 and MYR C
REMARK 800 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 D 804 and DAO D
REMARK 800 806
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues LP4 D 804 and MYR D
REMARK 800 807
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5HG3 RELATED DB: PDB
REMARK 900 RELATED ID: 5HG4 RELATED DB: PDB
DBREF 5HG6 A 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544
DBREF 5HG6 A 545 618 UNP Q4G1L2 Q4G1L2_EPTBU 126 199
DBREF 5HG6 C 20 156 UNP Q9JHF9 LY96_MOUSE 20 156
DBREF 5HG6 D 20 156 UNP Q9JHF9 LY96_MOUSE 20 156
DBREF 5HG6 B 27 544 UNP Q9QUK6 TLR4_MOUSE 27 544
DBREF 5HG6 B 545 618 UNP Q4G1L2 Q4G1L2_EPTBU 126 199
SEQRES 1 A 592 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS
SEQRES 2 A 592 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO
SEQRES 3 A 592 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU
SEQRES 4 A 592 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU
SEQRES 5 A 592 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR
SEQRES 6 A 592 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER
SEQRES 7 A 592 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER
SEQRES 8 A 592 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU
SEQRES 9 A 592 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE
SEQRES 10 A 592 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL
SEQRES 11 A 592 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR
SEQRES 12 A 592 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER
SEQRES 13 A 592 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN
SEQRES 14 A 592 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP
SEQRES 15 A 592 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA
SEQRES 16 A 592 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY
SEQRES 17 A 592 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN
SEQRES 18 A 592 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY
SEQRES 19 A 592 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO
SEQRES 20 A 592 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU
SEQRES 21 A 592 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE
SEQRES 22 A 592 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER
SEQRES 23 A 592 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO
SEQRES 24 A 592 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS
SEQRES 25 A 592 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU
SEQRES 26 A 592 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER
SEQRES 27 A 592 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP
SEQRES 28 A 592 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER
SEQRES 29 A 592 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP
SEQRES 30 A 592 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE
SEQRES 31 A 592 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS
SEQRES 32 A 592 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU
SEQRES 33 A 592 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR
SEQRES 34 A 592 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU
SEQRES 35 A 592 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE
SEQRES 36 A 592 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR
SEQRES 37 A 592 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU
SEQRES 38 A 592 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU
SEQRES 39 A 592 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU
SEQRES 40 A 592 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU
SEQRES 41 A 592 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP
SEQRES 42 A 592 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP
SEQRES 43 A 592 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE
SEQRES 44 A 592 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS
SEQRES 45 A 592 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO
SEQRES 46 A 592 VAL ARG SER ILE ILE CYS PRO
SEQRES 1 C 137 LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE
SEQRES 2 C 137 SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER
SEQRES 3 C 137 ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN
SEQRES 4 C 137 GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU
SEQRES 5 C 137 LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER
SEQRES 6 C 137 ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY
SEQRES 7 C 137 HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY
SEQRES 8 C 137 GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY
SEQRES 9 C 137 ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU
SEQRES 10 C 137 ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU
SEQRES 11 C 137 ASN PHE THR ILE ILE HIS ARG
SEQRES 1 D 137 LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE ILE
SEQRES 2 D 137 SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SER
SEQRES 3 D 137 ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR ASN
SEQRES 4 D 137 GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN LEU
SEQRES 5 D 137 LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SER
SEQRES 6 D 137 ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS GLY
SEQRES 7 D 137 HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS GLY
SEQRES 8 D 137 GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU GLY
SEQRES 9 D 137 ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA GLU
SEQRES 10 D 137 ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS LEU
SEQRES 11 D 137 ASN PHE THR ILE ILE HIS ARG
SEQRES 1 B 592 PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN CYS
SEQRES 2 B 592 MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE PRO
SEQRES 3 B 592 SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO LEU
SEQRES 4 B 592 LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER GLU
SEQRES 5 B 592 LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU THR
SEQRES 6 B 592 ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SER
SEQRES 7 B 592 ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SER
SEQRES 8 B 592 PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN LEU
SEQRES 9 B 592 VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER PHE
SEQRES 10 B 592 PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN VAL
SEQRES 11 B 592 ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA TYR
SEQRES 12 B 592 PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SER
SEQRES 13 B 592 TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU GLN
SEQRES 14 B 592 PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU ASP
SEQRES 15 B 592 MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN ALA
SEQRES 16 B 592 PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG GLY
SEQRES 17 B 592 ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU GLN
SEQRES 18 B 592 ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU GLY
SEQRES 19 B 592 GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU PRO
SEQRES 20 B 592 SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP GLU
SEQRES 21 B 592 PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP ILE
SEQRES 22 B 592 VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SER
SEQRES 23 B 592 LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL PRO
SEQRES 24 B 592 LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG CYS
SEQRES 25 B 592 GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE LEU
SEQRES 26 B 592 LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SER
SEQRES 27 B 592 PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU ASP
SEQRES 28 B 592 LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SER
SEQRES 29 B 592 TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU ASP
SEQRES 30 B 592 LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN PHE
SEQRES 31 B 592 MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN HIS
SEQRES 32 B 592 SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE LEU
SEQRES 33 B 592 SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR THR
SEQRES 34 B 592 ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY LEU
SEQRES 35 B 592 THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER PHE
SEQRES 36 B 592 LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR THR
SEQRES 37 B 592 ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU GLU
SEQRES 38 B 592 GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG LEU
SEQRES 39 B 592 GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE LEU
SEQRES 40 B 592 ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS GLU
SEQRES 41 B 592 LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO ASP
SEQRES 42 B 592 GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE TRP
SEQRES 43 B 592 LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG ILE
SEQRES 44 B 592 ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN LYS
SEQRES 45 B 592 GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS PRO
SEQRES 46 B 592 VAL ARG SER ILE ILE CYS PRO
HET NAG A 701 14
HET NAG A 702 14
HET NAG A 703 14
HET NAG A 704 14
HET NAG A 705 14
HET NAG A 706 14
HET NAG C 201 14
HET NAG C 202 14
HET NAG C 203 14
HET LP4 C 204 45
HET LP5 C 205 48
HET DAO C 206 13
HET MYR C 207 15
HET NAG D 801 14
HET NAG D 802 14
HET NAG D 803 14
HET LP4 D 804 45
HET LP5 D 805 48
HET DAO D 806 13
HET MYR D 807 15
HET NAG B 701 14
HET NAG B 702 14
HET NAG B 703 14
HET NAG B 704 14
HET NAG B 705 14
HET NAG B 706 14
HET NAG B 707 14
HETNAM NAG N-ACETYL-D-GLUCOSAMINE
HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3-
HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D-
HETNAM 3 LP4 GLUCOPYRANOSE
HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-
HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)
HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
HETNAM DAO LAURIC ACID
HETNAM MYR MYRISTIC ACID
FORMUL 5 NAG 19(C8 H15 N O6)
FORMUL 11 LP4 2(C34 H66 N O12 P)
FORMUL 12 LP5 2(C34 H66 N O12 P)
FORMUL 13 DAO 2(C12 H24 O2)
FORMUL 14 MYR 2(C14 H28 O2)
FORMUL 25 HOH *235(H2 O)
HELIX 1 AA1 PRO A 167 ASN A 172 5 6
HELIX 2 AA2 LEU A 194 GLU A 199 1 6
HELIX 3 AA3 SER A 238 ASN A 248 1 11
HELIX 4 AA4 GLU A 272 GLU A 277 5 6
HELIX 5 AA5 SER A 296 ALA A 306 5 11
HELIX 6 AA6 SER A 390 GLY A 395 1 6
HELIX 7 AA7 PHE A 461 LEU A 466 5 6
HELIX 8 AA8 ILE A 585 ASN A 595 1 11
HELIX 9 AA9 PRO A 611 ILE A 615 5 5
HELIX 10 AB1 TYR C 102 ALA C 107 5 6
HELIX 11 AB2 TYR D 102 ALA D 107 5 6
HELIX 12 AB3 PRO B 167 ASN B 172 5 6
HELIX 13 AB4 SER B 238 ASN B 248 1 11
HELIX 14 AB5 GLU B 272 GLU B 277 5 6
HELIX 15 AB6 ASP B 297 PHE B 302 1 6
HELIX 16 AB7 HIS B 303 ALA B 306 5 4
HELIX 17 AB8 SER B 390 GLY B 395 1 6
HELIX 18 AB9 ASP B 534 TYR B 538 5 5
HELIX 19 AC1 ILE B 585 SER B 596 1 12
SHEET 1 AA125 GLU A 30 VAL A 32 0
SHEET 2 AA125 THR A 36 GLN A 38 -1 O THR A 36 N VAL A 31
SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37
SHEET 4 AA125 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58
SHEET 5 AA125 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82
SHEET 6 AA125 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106
SHEET 7 AA125 LYS A 153 ASN A 155 1 O LYS A 153 N LEU A 130
SHEET 8 AA125 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154
SHEET 9 AA125 LEU A 207 ASP A 208 1 O ASP A 208 N VAL A 179
SHEET 10 AA125 LYS A 226 ARG A 233 1 O THR A 231 N LEU A 207
SHEET 11 AA125 HIS A 253 GLY A 260 1 O HIS A 253 N LEU A 227
SHEET 12 AA125 THR A 283 LEU A 289 1 O THR A 283 N VAL A 254
SHEET 13 AA125 ALA A 310 ALA A 314 1 O SER A 312 N LEU A 289
SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313
SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335
SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356
SHEET 17 AA125 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376
SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402
SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425
SHEET 20 AA125 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450
SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474
SHEET 22 AA125 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499
SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523
SHEET 24 AA125 LYS A 570 TRP A 572 1 O LYS A 570 N LEU A 547
SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571
SHEET 1 AA2 2 ILE A 67 LEU A 68 0
SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68
SHEET 1 AA3 2 THR A 188 ILE A 189 0
SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189
SHEET 1 AA4 4 ILE A 363 SER A 364 0
SHEET 2 AA4 4 LEU A 383 CYS A 388 1 O SER A 384 N ILE A 363
SHEET 3 AA4 4 ALA A 409 MET A 412 1 O ILE A 411 N CYS A 388
SHEET 4 AA4 4 THR A 431 LYS A 433 1 O LYS A 433 N MET A 412
SHEET 1 AA5 2 LYS A 458 ILE A 459 0
SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459
SHEET 1 AA6 2 THR A 485 LEU A 486 0
SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486
SHEET 1 AA7 6 TRP C 23 ASN C 26 0
SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35
SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147
SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82
SHEET 1 AA8 6 TRP C 23 ASN C 26 0
SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35
SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147
SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78
SHEET 1 AA9 3 SER C 45 GLU C 49 0
SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O HIS C 62 N SER C 47
SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O THR C 115 N VAL C 63
SHEET 1 AB1 6 GLN D 21 ASN D 26 0
SHEET 2 AB1 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22
SHEET 3 AB1 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33
SHEET 4 AB1 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153
SHEET 5 AB1 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 AB1 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82
SHEET 1 AB2 6 GLN D 21 ASN D 26 0
SHEET 2 AB2 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22
SHEET 3 AB2 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33
SHEET 4 AB2 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153
SHEET 5 AB2 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 AB2 6 ARG D 90 VAL D 93 -1 O ARG D 90 N LEU D 78
SHEET 1 AB3 3 SER D 45 SER D 47 0
SHEET 2 AB3 3 GLY D 56 PHE D 65 -1 O HIS D 62 N SER D 47
SHEET 3 AB3 3 VAL D 113 GLU D 122 -1 O ILE D 117 N VAL D 61
SHEET 1 AB410 ASN B 57 ASP B 59 0
SHEET 2 AB410 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58
SHEET 3 AB410 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82
SHEET 4 AB410 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106
SHEET 5 AB410 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130
SHEET 6 AB410 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154
SHEET 7 AB410 LEU B 205 ASP B 208 1 O SER B 206 N VAL B 179
SHEET 8 AB410 LYS B 226 ARG B 233 1 O HIS B 228 N LEU B 205
SHEET 9 AB410 HIS B 253 GLY B 260 1 O ARG B 256 N HIS B 228
SHEET 10 AB410 THR B 283 LEU B 289 1 O THR B 283 N VAL B 254
SHEET 1 AB5 2 THR B 188 ILE B 189 0
SHEET 2 AB5 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189
SHEET 1 AB613 MET B 311 ALA B 314 0
SHEET 2 AB613 LEU B 333 ILE B 336 1 O SER B 334 N LEU B 313
SHEET 3 AB613 SER B 353 THR B 357 1 O THR B 355 N ILE B 335
SHEET 4 AB613 TYR B 375 ASP B 377 1 O TYR B 375 N LEU B 354
SHEET 5 AB613 HIS B 401 ASP B 403 1 O HIS B 401 N LEU B 376
SHEET 6 AB613 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402
SHEET 7 AB613 TYR B 449 ASP B 451 1 O TYR B 449 N LEU B 425
SHEET 8 AB613 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450
SHEET 9 AB613 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474
SHEET 10 AB613 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499
SHEET 11 AB613 GLU B 546 ALA B 548 1 O GLU B 546 N LEU B 523
SHEET 12 AB613 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547
SHEET 13 AB613 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571
SHEET 1 AB7 3 PHE B 385 CYS B 388 0
SHEET 2 AB7 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385
SHEET 3 AB7 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410
SHEET 1 AB8 2 LYS B 458 ILE B 459 0
SHEET 2 AB8 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459
SHEET 1 AB9 2 THR B 485 LEU B 486 0
SHEET 2 AB9 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486
SSBOND 1 CYS A 280 CYS A 304 1555 1555 2.05
SSBOND 2 CYS A 388 CYS A 389 1555 1555 2.03
SSBOND 3 CYS A 580 CYS A 605 1555 1555 2.02
SSBOND 4 CYS A 582 CYS A 617 1555 1555 2.07
SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.07
SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.09
SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.01
SSBOND 8 CYS D 25 CYS D 51 1555 1555 2.03
SSBOND 9 CYS D 37 CYS D 148 1555 1555 2.10
SSBOND 10 CYS D 95 CYS D 105 1555 1555 2.04
SSBOND 11 CYS B 28 CYS B 39 1555 1555 2.05
SSBOND 12 CYS B 280 CYS B 304 1555 1555 2.04
SSBOND 13 CYS B 388 CYS B 389 1555 1555 2.04
SSBOND 14 CYS B 580 CYS B 605 1555 1555 2.05
SSBOND 15 CYS B 582 CYS B 617 1555 1555 2.06
LINK ND2 ASN A 204 C1 NAG A 701 1555 1555 1.46
LINK ND2 ASN A 307 C1 NAG A 703 1555 1555 1.47
LINK ND2 ASN A 492 C1 NAG A 704 1555 1555 1.46
LINK ND2 ASN A 524 C1 NAG A 705 1555 1555 1.47
LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.45
LINK ND2 ASN C 150 C1 NAG C 202 1555 1555 1.42
LINK ND2 ASN D 114 C1 NAG D 803 1555 1555 1.47
LINK ND2 ASN D 150 C1 NAG D 801 1555 1555 1.46
LINK ND2 ASN B 204 C1 NAG B 701 1555 1555 1.47
LINK ND2 ASN B 307 C1 NAG B 703 1555 1555 1.45
LINK ND2 ASN B 492 C1 NAG B 705 1555 1555 1.47
LINK ND2 ASN B 524 C1 NAG B 706 1555 1555 1.45
LINK O4 NAG A 701 C1 NAG A 702 1555 1555 1.44
LINK O4 NAG A 705 C1 NAG A 706 1555 1555 1.42
LINK O4 NAG C 202 C1 NAG C 203 1555 1555 1.44
LINK O43 LP4 C 204 C1 MYR C 207 1555 1555 1.35
LINK O44 LP4 C 204 C1 DAO C 206 1555 1555 1.38
LINK O4 NAG D 801 C1 NAG D 802 1555 1555 1.47
LINK O43 LP4 D 804 C1 MYR D 807 1555 1555 1.37
LINK O44 LP4 D 804 C1 DAO D 806 1555 1555 1.35
LINK O4 NAG B 701 C1 NAG B 702 1555 1555 1.46
LINK O4 NAG B 703 C1 NAG B 704 1555 1555 1.45
LINK O4 NAG B 706 C1 NAG B 707 1555 1555 1.46
CISPEP 1 HIS A 98 GLY A 99 0 2.92
CISPEP 2 CYS A 388 CYS A 389 0 -23.06
CISPEP 3 CYS A 582 PRO A 583 0 4.86
CISPEP 4 GLU C 49 PRO C 50 0 -5.36
CISPEP 5 GLU D 49 PRO D 50 0 -6.71
CISPEP 6 CYS B 388 CYS B 389 0 -9.20
CISPEP 7 CYS B 582 PRO B 583 0 6.02
SITE 1 AC1 13 SER B 413 ARG B 434 VAL C 82 LEU C 87
SITE 2 AC1 13 ARG C 90 PHE C 121 GLU C 122 GLY C 123
SITE 3 AC1 13 ILE C 124 CYS C 133 LP4 C 204 DAO C 206
SITE 4 AC1 13 HOH C 314
SITE 1 AC2 11 SER A 413 HOH A 882 LEU D 87 ARG D 90
SITE 2 AC2 11 PHE D 121 GLU D 122 GLY D 123 ILE D 124
SITE 3 AC2 11 PHE D 151 LP4 D 804 DAO D 806
SITE 1 AC3 4 ASN A 204 HIS A 228 ARG A 256 HOH A 833
SITE 1 AC4 1 ASN A 307
SITE 1 AC5 5 LEU A 466 ASN A 492 HOH A 856 HOH A 870
SITE 2 AC5 5 HOH A 881
SITE 1 AC6 6 SER A 502 LYS A 503 ASN A 524 SER A 526
SITE 2 AC6 6 TRP A 572 HOH A 837
SITE 1 AC7 4 VAL B 177 ASN B 204 HIS B 228 ARG B 256
SITE 1 AC8 3 HIS B 303 ASN B 307 HOH B 816
SITE 1 AC9 2 ASN B 492 HOH B 853
SITE 1 AD1 9 SER B 502 LYS B 503 ASN B 524 SER B 526
SITE 2 AD1 9 HIS B 527 TRP B 572 HOH B 804 HOH B 844
SITE 3 AD1 9 HOH B 861
SITE 1 AD2 3 GLU C 64 ASN C 114 HOH C 301
SITE 1 AD3 3 ASP C 38 ARG C 132 ASN C 150
SITE 1 AD4 4 GLU D 64 ASN D 114 HOH D 902 HOH D 910
SITE 1 AD5 4 ASP D 38 HIS D 39 ARG D 132 ASN D 150
SITE 1 AD6 9 LYS A 263 VAL C 61 LEU C 78 GLU C 92
SITE 2 AD6 9 TYR C 102 SER C 120 LP5 C 205 MYR C 207
SITE 3 AD6 9 HOH C 308
SITE 1 AD7 9 LYS A 263 VAL C 61 PHE C 76 TYR C 102
SITE 2 AD7 9 SER C 120 PHE C 151 LP5 C 205 DAO C 206
SITE 3 AD7 9 HOH C 308
SITE 1 AD8 11 LYS B 263 ILE D 52 LEU D 78 ARG D 90
SITE 2 AD8 11 GLU D 92 ILE D 117 PHE D 119 SER D 120
SITE 3 AD8 11 TYR D 131 LP5 D 805 MYR D 807
SITE 1 AD9 10 LYS B 263 ILE D 52 PHE D 76 ILE D 117
SITE 2 AD9 10 PHE D 119 SER D 120 ALA D 135 PHE D 151
SITE 3 AD9 10 LP5 D 805 DAO D 806
CRYST1 66.843 145.737 136.195 90.00 100.67 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014960 0.000000 0.002818 0.00000
SCALE2 0.000000 0.006862 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007472 0.00000