HEADER HYDROLASE 09-JAN-16 5HH5 TITLE CRYSTAL STRUCTURE OF B3 METALLO-BETA-LACTAMASE L1 COMPLEXED WITH A TITLE 2 PHOSPHONATE-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1,BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: SOLUBL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS INHIBITOR, CARBAPENAMASE, PYRIDINE, PHOSPHONATE, ANTIBIOTIC KEYWDS 2 RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 7 06-NOV-24 5HH5 1 REMARK REVDAT 6 10-JAN-24 5HH5 1 REMARK REVDAT 5 30-MAR-22 5HH5 1 REMARK REVDAT 4 14-APR-21 5HH5 1 JRNL REMARK REVDAT 3 27-FEB-19 5HH5 1 JRNL REVDAT 2 13-SEP-17 5HH5 1 REMARK REVDAT 1 18-JAN-17 5HH5 0 JRNL AUTH P.HINCHLIFFE,C.A.TANNER,A.P.KRISMANICH,G.LABBE, JRNL AUTH 2 V.J.GOODFELLOW,L.MARRONE,A.Y.DESOKY,K.CALVOPINA,E.E.WHITTLE, JRNL AUTH 3 F.ZENG,M.B.AVISON,N.C.BOLS,S.SIEMANN,J.SPENCER, JRNL AUTH 4 G.I.DMITRIENKO JRNL TITL STRUCTURAL AND KINETIC STUDIES OF THE POTENT INHIBITION OF JRNL TITL 2 METALLO-BETA-LACTAMASES BY JRNL TITL 3 6-PHOSPHONOMETHYLPYRIDINE-2-CARBOXYLATES. JRNL REF BIOCHEMISTRY V. 57 1880 2018 JRNL REFN ISSN 0006-2960 JRNL PMID 29485857 JRNL DOI 10.1021/ACS.BIOCHEM.7B01299 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6505 - 4.0027 1.00 2850 147 0.1472 0.1631 REMARK 3 2 4.0027 - 3.1771 1.00 2694 130 0.1420 0.2009 REMARK 3 3 3.1771 - 2.7756 1.00 2665 117 0.1701 0.1881 REMARK 3 4 2.7756 - 2.5218 1.00 2645 122 0.1681 0.1890 REMARK 3 5 2.5218 - 2.3410 1.00 2590 150 0.1637 0.2121 REMARK 3 6 2.3410 - 2.2030 1.00 2616 119 0.1647 0.1910 REMARK 3 7 2.2030 - 2.0927 1.00 2560 156 0.1711 0.2164 REMARK 3 8 2.0927 - 2.0016 1.00 2578 150 0.1858 0.2346 REMARK 3 9 2.0016 - 1.9245 1.00 2569 142 0.1930 0.2376 REMARK 3 10 1.9245 - 1.8581 1.00 2572 136 0.2168 0.2361 REMARK 3 11 1.8581 - 1.8000 1.00 2585 119 0.2392 0.3042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2114 REMARK 3 ANGLE : 1.067 2891 REMARK 3 CHIRALITY : 0.054 316 REMARK 3 PLANARITY : 0.006 379 REMARK 3 DIHEDRAL : 12.750 750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2748 24.1735 -14.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.3351 REMARK 3 T33: 0.1916 T12: 0.0837 REMARK 3 T13: -0.0542 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 8.8191 L22: 2.6009 REMARK 3 L33: 4.6920 L12: 4.3457 REMARK 3 L13: -6.0576 L23: -2.5032 REMARK 3 S TENSOR REMARK 3 S11: 0.2493 S12: -0.9531 S13: -0.0839 REMARK 3 S21: 0.0891 S22: -0.2062 S23: -0.1259 REMARK 3 S31: 0.0622 S32: 0.7562 S33: 0.0124 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6529 21.8808 -7.8663 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.1783 REMARK 3 T33: 0.2121 T12: -0.0755 REMARK 3 T13: -0.1084 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.0643 L22: 1.5424 REMARK 3 L33: 2.4962 L12: 0.6920 REMARK 3 L13: -0.6168 L23: 0.0765 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: 0.1021 S13: 0.0627 REMARK 3 S21: -0.2813 S22: 0.1738 S23: 0.3408 REMARK 3 S31: 0.3879 S32: -0.2182 S33: -0.1334 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7417 35.5480 -6.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1296 REMARK 3 T33: 0.1808 T12: -0.0233 REMARK 3 T13: -0.0323 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.8252 L22: 1.9195 REMARK 3 L33: 1.9120 L12: 0.0482 REMARK 3 L13: -0.1390 L23: 0.2353 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.0192 S13: 0.0587 REMARK 3 S21: -0.0608 S22: 0.0677 S23: 0.2154 REMARK 3 S31: 0.0551 S32: 0.0327 S33: -0.0889 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4932 31.8200 5.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.1069 REMARK 3 T33: 0.1446 T12: -0.0206 REMARK 3 T13: -0.0131 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.9351 L22: 1.6076 REMARK 3 L33: 1.5234 L12: 1.2654 REMARK 3 L13: -0.1669 L23: -0.3618 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.1219 S13: -0.0066 REMARK 3 S21: 0.1213 S22: 0.0287 S23: 0.0900 REMARK 3 S31: 0.1081 S32: -0.0694 S33: -0.0730 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2984 32.7794 12.0096 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.1303 REMARK 3 T33: 0.1510 T12: 0.0027 REMARK 3 T13: 0.0020 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 8.2240 L22: 2.6660 REMARK 3 L33: 2.5660 L12: 2.4505 REMARK 3 L13: -1.3620 L23: -0.9868 REMARK 3 S TENSOR REMARK 3 S11: 0.1612 S12: -0.4371 S13: 0.5959 REMARK 3 S21: 0.2768 S22: -0.0436 S23: 0.3747 REMARK 3 S31: -0.1362 S32: 0.0895 S33: -0.1006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2956 15.2877 6.5765 REMARK 3 T TENSOR REMARK 3 T11: 0.3377 T22: 0.1900 REMARK 3 T33: 0.1655 T12: -0.0129 REMARK 3 T13: -0.0499 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.1575 L22: 3.0106 REMARK 3 L33: 2.3028 L12: 0.4631 REMARK 3 L13: -0.5768 L23: 0.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0671 S13: -0.1426 REMARK 3 S21: -0.1002 S22: 0.0285 S23: 0.0353 REMARK 3 S31: 0.7476 S32: 0.2133 S33: -0.0420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4092 28.3522 14.5891 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2544 REMARK 3 T33: 0.1564 T12: 0.0140 REMARK 3 T13: -0.0228 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 7.7824 L22: 3.6268 REMARK 3 L33: 1.3801 L12: 4.9921 REMARK 3 L13: 0.7406 L23: -0.2592 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.2223 S13: 0.0533 REMARK 3 S21: 0.1737 S22: -0.1105 S23: -0.1532 REMARK 3 S31: 0.1078 S32: 0.2419 S33: 0.0598 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 52.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.80 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.90 REMARK 200 R MERGE FOR SHELL (I) : 1.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.85767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.71533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.85767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.71533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.85767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.71533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.85767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.71533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 -52.65000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 91.19200 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -32.69967 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -32.69967 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 766 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 318 REMARK 465 ARG A 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 564 O HOH A 747 1.99 REMARK 500 O10 60M A 407 O HOH A 501 2.06 REMARK 500 O HOH A 684 O HOH A 721 2.07 REMARK 500 O HOH A 677 O HOH A 737 2.09 REMARK 500 O HOH A 699 O HOH A 752 2.12 REMARK 500 O HOH A 657 O HOH A 760 2.14 REMARK 500 CD2 HIS A 51 O HOH A 504 2.15 REMARK 500 NH1 ARG A 209 O HOH A 502 2.17 REMARK 500 O HOH A 570 O HOH A 664 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 622 O HOH A 762 10555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 155.19 66.77 REMARK 500 ALA A 117 51.18 -93.24 REMARK 500 HIS A 121 -32.25 -130.04 REMARK 500 TYR A 237 71.41 -150.65 REMARK 500 CYS A 256 71.48 -157.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 99.8 REMARK 620 3 HIS A 196 NE2 101.8 112.8 REMARK 620 4 60M A 407 O10 122.5 114.4 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 60M A 407 DBREF 5HH5 A 23 319 UNP P52700 BLA1_STEMA 22 290 SEQADV 5HH5 GLY A 21 UNP P52700 EXPRESSION TAG SEQADV 5HH5 PRO A 22 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 14 HET 60M A 407 19 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM 60M 6-(PHOSPHONOMETHYL)PYRIDINE-2-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 60M C7 H8 N O5 P FORMUL 9 HOH *283(H2 O) HELIX 1 AA1 ASP A 36 GLN A 41 5 6 HELIX 2 AA2 MET A 87 GLN A 90 5 3 HELIX 3 AA3 MET A 91 GLY A 103 1 13 HELIX 4 AA4 THR A 105 ARG A 107 5 3 HELIX 5 AA5 HIS A 118 GLY A 123 1 6 HELIX 6 AA6 PRO A 124 THR A 132 1 9 HELIX 7 AA7 ASN A 139 ARG A 148 1 10 HELIX 8 AA8 HIS A 239 ALA A 253 1 15 HELIX 9 AA9 HIS A 263 ASN A 268 5 6 HELIX 10 AB1 ALA A 273 ALA A 289 5 5 HELIX 11 AB2 THR A 295 GLY A 317 1 23 SHEET 1 AA1 7 LEU A 46 ALA A 49 0 SHEET 2 AA1 7 THR A 52 GLN A 54 -1 O GLN A 54 N LEU A 46 SHEET 3 AA1 7 LEU A 72 THR A 76 -1 O LEU A 73 N TRP A 53 SHEET 4 AA1 7 GLY A 79 LEU A 83 -1 O VAL A 81 N VAL A 74 SHEET 5 AA1 7 LEU A 109 LEU A 113 1 O LEU A 113 N LEU A 82 SHEET 6 AA1 7 LYS A 135 ALA A 138 1 O LYS A 135 N ILE A 112 SHEET 7 AA1 7 ARG A 172 ILE A 173 1 O ARG A 172 N ALA A 138 SHEET 1 AA2 5 VAL A 179 VAL A 182 0 SHEET 2 AA2 5 ILE A 185 PHE A 191 -1 O ILE A 185 N VAL A 182 SHEET 3 AA2 5 THR A 201 ARG A 209 -1 O ALA A 202 N HIS A 190 SHEET 4 AA2 5 LYS A 212 TYR A 218 -1 O VAL A 214 N ASP A 207 SHEET 5 AA2 5 VAL A 258 LEU A 260 1 O VAL A 258 N ALA A 217 SSBOND 1 CYS A 256 CYS A 296 1555 1555 2.07 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.09 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 2.08 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.11 LINK ZN ZN A 401 O10 60M A 407 1555 1555 1.80 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 60M A 407 SITE 2 AC1 5 HOH A 501 SITE 1 AC2 5 ARG A 172 VAL A 179 ILE A 180 THR A 181 SITE 2 AC2 5 HOH A 606 SITE 1 AC3 4 TRP A 53 ARG A 102 HOH A 523 HOH A 530 SITE 1 AC4 9 ARG A 209 ARG A 252 ALA A 275 ARG A 276 SITE 2 AC4 9 ALA A 289 GLY A 290 ALA A 291 LYS A 297 SITE 3 AC4 9 HOH A 541 SITE 1 AC5 2 ARG A 209 ARG A 252 SITE 1 AC6 8 ARG A 130 ARG A 148 ASP A 152 ASP A 171 SITE 2 AC6 8 ARG A 172 ILE A 173 HOH A 537 HOH A 621 SITE 1 AC7 14 HIS A 116 HIS A 118 ASP A 120 HIS A 121 SITE 2 AC7 14 HIS A 196 SER A 221 SER A 225 HIS A 263 SITE 3 AC7 14 ALA A 266 ZN A 401 HOH A 501 HOH A 511 SITE 4 AC7 14 HOH A 578 HOH A 626 CRYST1 105.256 105.256 98.573 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009501 0.005485 0.000000 0.00000 SCALE2 0.000000 0.010970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010145 0.00000