HEADER HYDROLASE 09-JAN-16 5HH6 TITLE CRYSTAL STRUCTURE OF B3 METALLO-BETA-LACTAMASE L1 IN COMPLEX WITH A TITLE 2 PHOSPHONATE-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: SOLUBL21 KEYWDS INHIBITOR, CARBAPENAMASE, PYRIDINE, PHOSPHONATE, ANTIBIOTIC KEYWDS 2 RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 7 10-JAN-24 5HH6 1 REMARK REVDAT 6 30-MAR-22 5HH6 1 REMARK REVDAT 5 14-APR-21 5HH6 1 JRNL REMARK REVDAT 4 27-FEB-19 5HH6 1 JRNL REVDAT 3 13-SEP-17 5HH6 1 REMARK REVDAT 2 01-FEB-17 5HH6 1 TITLE REVDAT 1 18-JAN-17 5HH6 0 JRNL AUTH P.HINCHLIFFE,C.A.TANNER,A.P.KRISMANICH,G.LABBE, JRNL AUTH 2 V.J.GOODFELLOW,L.MARRONE,A.Y.DESOKY,K.CALVOPINA,E.E.WHITTLE, JRNL AUTH 3 F.ZENG,M.B.AVISON,N.C.BOLS,S.SIEMANN,J.SPENCER, JRNL AUTH 4 G.I.DMITRIENKO JRNL TITL STRUCTURAL AND KINETIC STUDIES OF THE POTENT INHIBITION OF JRNL TITL 2 METALLO-BETA-LACTAMASES BY JRNL TITL 3 6-PHOSPHONOMETHYLPYRIDINE-2-CARBOXYLATES. JRNL REF BIOCHEMISTRY V. 57 1880 2018 JRNL REFN ISSN 0006-2960 JRNL PMID 29485857 JRNL DOI 10.1021/ACS.BIOCHEM.7B01299 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4996 - 4.0025 1.00 2869 140 0.1462 0.1848 REMARK 3 2 4.0025 - 3.1771 1.00 2677 163 0.1438 0.1532 REMARK 3 3 3.1771 - 2.7756 1.00 2639 146 0.1640 0.1896 REMARK 3 4 2.7756 - 2.5218 1.00 2637 146 0.1628 0.1834 REMARK 3 5 2.5218 - 2.3411 1.00 2604 139 0.1601 0.1980 REMARK 3 6 2.3411 - 2.2030 1.00 2627 126 0.1600 0.1868 REMARK 3 7 2.2030 - 2.0927 1.00 2609 135 0.1625 0.2371 REMARK 3 8 2.0927 - 2.0016 1.00 2597 131 0.1729 0.2126 REMARK 3 9 2.0016 - 1.9246 1.00 2595 124 0.1791 0.2143 REMARK 3 10 1.9246 - 1.8581 1.00 2583 138 0.1928 0.2365 REMARK 3 11 1.8581 - 1.8000 1.00 2569 139 0.2162 0.2456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2082 REMARK 3 ANGLE : 1.039 2846 REMARK 3 CHIRALITY : 0.046 314 REMARK 3 PLANARITY : 0.006 374 REMARK 3 DIHEDRAL : 14.115 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2557 19.9510 -8.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.2267 REMARK 3 T33: 0.1857 T12: 0.0053 REMARK 3 T13: -0.0717 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.5271 L22: 0.7643 REMARK 3 L33: 2.4167 L12: 0.7805 REMARK 3 L13: -1.9363 L23: -0.9026 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: -0.2003 S13: -0.0239 REMARK 3 S21: -0.1112 S22: 0.0228 S23: 0.0118 REMARK 3 S31: 0.3461 S32: 0.1798 S33: -0.0375 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1152 24.8970 -8.9474 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.1774 REMARK 3 T33: 0.1855 T12: -0.0594 REMARK 3 T13: -0.0919 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.5965 L22: 1.8101 REMARK 3 L33: 2.4642 L12: 0.9799 REMARK 3 L13: -0.7541 L23: 0.2604 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: 0.2012 S13: 0.1156 REMARK 3 S21: -0.2713 S22: 0.1601 S23: 0.3640 REMARK 3 S31: 0.3407 S32: -0.1753 S33: -0.0633 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4576 36.4683 -6.9838 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1474 REMARK 3 T33: 0.1958 T12: -0.0284 REMARK 3 T13: -0.0232 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.0388 L22: 2.0972 REMARK 3 L33: 2.2241 L12: -0.1203 REMARK 3 L13: -0.2502 L23: 0.3568 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0090 S13: 0.0232 REMARK 3 S21: -0.0729 S22: 0.0494 S23: 0.2304 REMARK 3 S31: 0.0154 S32: 0.0250 S33: -0.0553 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5224 31.8366 5.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.1418 REMARK 3 T33: 0.1616 T12: -0.0194 REMARK 3 T13: -0.0154 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.5883 L22: 1.3434 REMARK 3 L33: 1.3473 L12: 1.1375 REMARK 3 L13: 0.1142 L23: -0.2359 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.1369 S13: 0.0317 REMARK 3 S21: 0.0955 S22: 0.0277 S23: 0.0946 REMARK 3 S31: 0.1130 S32: -0.0371 S33: -0.1004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3203 32.7974 12.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.1738 REMARK 3 T33: 0.1835 T12: -0.0048 REMARK 3 T13: 0.0057 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 7.3658 L22: 2.5296 REMARK 3 L33: 2.2362 L12: 2.1943 REMARK 3 L13: -1.2224 L23: -0.6778 REMARK 3 S TENSOR REMARK 3 S11: 0.1659 S12: -0.4117 S13: 0.5490 REMARK 3 S21: 0.2474 S22: -0.0379 S23: 0.3902 REMARK 3 S31: -0.0961 S32: 0.0733 S33: -0.0980 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0983 15.8197 6.4749 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.2044 REMARK 3 T33: 0.1763 T12: -0.0231 REMARK 3 T13: -0.0562 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.1723 L22: 3.0362 REMARK 3 L33: 4.6723 L12: -0.9728 REMARK 3 L13: -0.0067 L23: 1.5566 REMARK 3 S TENSOR REMARK 3 S11: 0.1539 S12: -0.0173 S13: -0.1437 REMARK 3 S21: -0.0263 S22: 0.0054 S23: 0.2497 REMARK 3 S31: 0.7323 S32: -0.0544 S33: -0.1222 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4133 28.3492 14.6496 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.3087 REMARK 3 T33: 0.1616 T12: -0.0008 REMARK 3 T13: -0.0065 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 6.2500 L22: 3.7075 REMARK 3 L33: 1.4420 L12: 3.6754 REMARK 3 L13: 0.4498 L23: -0.2939 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -0.3245 S13: 0.0807 REMARK 3 S21: 0.1804 S22: -0.1988 S23: -0.1207 REMARK 3 S31: 0.1362 S32: 0.3257 S33: 0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.90 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 40.40 REMARK 200 R MERGE FOR SHELL (I) : 1.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.94500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.89000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.94500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.94500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.89000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.94500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 -52.65000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 91.19200 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -32.69967 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -32.69967 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 318 REMARK 465 ARG A 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O06 60N A 402 O HOH A 501 1.67 REMARK 500 O PRO A 77 O HOH A 502 1.95 REMARK 500 O HOH A 667 O HOH A 726 1.96 REMARK 500 O HOH A 665 O HOH A 713 1.96 REMARK 500 O HOH A 673 O HOH A 726 2.00 REMARK 500 OD1 ASP A 78 O HOH A 503 2.00 REMARK 500 OE1 GLU A 67 O HOH A 504 2.10 REMARK 500 O HOH A 742 O HOH A 753 2.10 REMARK 500 OG SER A 221 O HOH A 501 2.11 REMARK 500 O HOH A 651 O HOH A 729 2.11 REMARK 500 O05 60N A 402 O HOH A 505 2.13 REMARK 500 O HOH A 587 O HOH A 661 2.16 REMARK 500 NE ARG A 246 O HOH A 506 2.16 REMARK 500 O HOH A 512 O HOH A 721 2.19 REMARK 500 OD2 ASP A 160 O HOH A 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 511 O HOH A 511 9554 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 154.68 67.06 REMARK 500 ALA A 117 52.82 -90.88 REMARK 500 HIS A 121 -34.01 -130.07 REMARK 500 CYS A 256 70.73 -156.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 762 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.6 REMARK 620 3 HIS A 196 NE2 98.1 110.8 REMARK 620 4 60N A 402 O05 116.6 120.0 110.2 REMARK 620 5 HOH A 505 O 176.4 81.4 85.2 60.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 60N A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 DBREF 5HH6 A 23 319 UNP P52700 BLA1_STEMA 22 290 SEQADV 5HH6 GLY A 21 UNP P52700 EXPRESSION TAG SEQADV 5HH6 PRO A 22 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 401 1 HET 60N A 402 15 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM ZN ZINC ION HETNAM 60N 6-[(~{S})-OXIDANYL(PHOSPHONO)METHYL]PYRIDINE-2- HETNAM 2 60N CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 60N C7 H8 N O6 P FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *262(H2 O) HELIX 1 AA1 ASP A 36 GLN A 41 5 6 HELIX 2 AA2 MET A 87 GLN A 90 5 3 HELIX 3 AA3 MET A 91 ARG A 102 1 12 HELIX 4 AA4 THR A 105 ARG A 107 5 3 HELIX 5 AA5 HIS A 118 GLY A 123 1 6 HELIX 6 AA6 PRO A 124 THR A 132 1 9 HELIX 7 AA7 ASN A 139 ARG A 148 1 10 HELIX 8 AA8 HIS A 239 ALA A 253 1 15 HELIX 9 AA9 HIS A 263 ASN A 268 5 6 HELIX 10 AB1 ALA A 273 ALA A 289 5 5 HELIX 11 AB2 THR A 295 GLY A 317 1 23 SHEET 1 AA1 7 LEU A 46 ALA A 49 0 SHEET 2 AA1 7 THR A 52 GLN A 54 -1 O GLN A 54 N LEU A 46 SHEET 3 AA1 7 LEU A 72 THR A 76 -1 O LEU A 73 N TRP A 53 SHEET 4 AA1 7 GLY A 79 LEU A 83 -1 O VAL A 81 N VAL A 74 SHEET 5 AA1 7 LEU A 109 LEU A 113 1 O LEU A 113 N LEU A 82 SHEET 6 AA1 7 LYS A 135 ALA A 138 1 O LYS A 135 N ILE A 112 SHEET 7 AA1 7 ARG A 172 ILE A 173 1 O ARG A 172 N ALA A 138 SHEET 1 AA2 5 VAL A 179 VAL A 182 0 SHEET 2 AA2 5 ILE A 185 PHE A 191 -1 O PHE A 187 N ILE A 180 SHEET 3 AA2 5 THR A 201 ARG A 209 -1 O ALA A 202 N HIS A 190 SHEET 4 AA2 5 LYS A 212 TYR A 218 -1 O TYR A 218 N TRP A 203 SHEET 5 AA2 5 VAL A 258 LEU A 260 1 O VAL A 258 N ALA A 217 SSBOND 1 CYS A 256 CYS A 296 1555 1555 2.07 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.12 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 2.09 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.10 LINK ZN ZN A 401 O05 60N A 402 1555 1555 1.80 LINK ZN ZN A 401 O HOH A 505 1555 1555 2.32 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 60N A 402 SITE 2 AC1 5 HOH A 505 SITE 1 AC2 16 HIS A 116 HIS A 118 ASP A 120 HIS A 121 SITE 2 AC2 16 HIS A 196 SER A 221 SER A 225 PRO A 227 SITE 3 AC2 16 HIS A 263 ALA A 266 ZN A 401 HOH A 501 SITE 4 AC2 16 HOH A 505 HOH A 508 HOH A 581 HOH A 645 SITE 1 AC3 4 ARG A 172 ILE A 180 THR A 181 HOH A 589 SITE 1 AC4 4 ARG A 102 HOH A 515 HOH A 559 HOH A 621 CRYST1 105.347 105.347 98.835 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009492 0.005480 0.000000 0.00000 SCALE2 0.000000 0.010961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010118 0.00000