HEADER TRANSCRIPTION 10-JAN-16 5HH7 TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS ORC1B BAH-PHD CASSETTE IN COMPLEX TITLE 2 WITH UNMODIFIED H3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORIGIN OF REPLICATION COMPLEX SUBUNIT 1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BAH-PHD CASSETTE, UNP RESIDUES 118-349; COMPND 5 SYNONYM: ATORC1B,ORIGIN RECOGNITION COMPLEX 1B PROTEIN,PROTEIN COMPND 6 UNFERTILIZED EMBRYO SAC 13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3 1-15 PEPTIDE; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ORC1B, UNE13, AT4G12620, T1P17.210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHD FINGER, BAH DOMAIN, MULTIVALENT READOUT, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LI,J.DU REVDAT 3 20-MAR-24 5HH7 1 JRNL REMARK REVDAT 2 16-MAR-16 5HH7 1 JRNL REVDAT 1 09-MAR-16 5HH7 0 JRNL AUTH S.LI,Z.YANG,X.DU,R.LIU,A.W.WILKINSON,O.GOZANI,S.E.JACOBSEN, JRNL AUTH 2 D.J.PATEL,J.DU JRNL TITL STRUCTURAL BASIS FOR THE UNIQUE MULTIVALENT READOUT OF JRNL TITL 2 UNMODIFIED H3 TAIL BY ARABIDOPSIS ORC1B BAH-PHD CASSETTE JRNL REF STRUCTURE V. 24 486 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26876097 JRNL DOI 10.1016/J.STR.2016.01.004 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5564 - 4.9790 0.99 2650 106 0.2099 0.2178 REMARK 3 2 4.9790 - 3.9527 0.99 2645 137 0.1497 0.1356 REMARK 3 3 3.9527 - 3.4532 0.99 2620 145 0.1810 0.1772 REMARK 3 4 3.4532 - 3.1376 0.99 2677 127 0.1952 0.2445 REMARK 3 5 3.1376 - 2.9127 0.99 2590 158 0.1928 0.2028 REMARK 3 6 2.9127 - 2.7410 0.99 2643 150 0.2043 0.2027 REMARK 3 7 2.7410 - 2.6038 1.00 2626 146 0.2132 0.2401 REMARK 3 8 2.6038 - 2.4904 1.00 2597 177 0.2095 0.2106 REMARK 3 9 2.4904 - 2.3946 0.99 2663 159 0.1943 0.1899 REMARK 3 10 2.3946 - 2.3119 1.00 2617 153 0.1993 0.2021 REMARK 3 11 2.3119 - 2.2397 1.00 2693 132 0.1992 0.2704 REMARK 3 12 2.2397 - 2.1756 0.99 2665 104 0.2046 0.2383 REMARK 3 13 2.1756 - 2.1184 0.99 2587 166 0.1978 0.2351 REMARK 3 14 2.1184 - 2.0667 0.99 2645 170 0.2069 0.2798 REMARK 3 15 2.0667 - 2.0197 0.99 2567 140 0.2137 0.2320 REMARK 3 16 2.0197 - 1.9767 0.99 2691 132 0.2212 0.2142 REMARK 3 17 1.9767 - 1.9372 0.99 2610 125 0.2412 0.2548 REMARK 3 18 1.9372 - 1.9006 0.99 2635 138 0.2755 0.3374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 36.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91330 REMARK 3 B22 (A**2) : -0.91330 REMARK 3 B33 (A**2) : 1.82660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1724 REMARK 3 ANGLE : 0.858 2318 REMARK 3 CHIRALITY : 0.062 238 REMARK 3 PLANARITY : 0.003 299 REMARK 3 DIHEDRAL : 14.315 661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 128:150) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3888 12.5419 11.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.3267 REMARK 3 T33: 0.5645 T12: 0.0726 REMARK 3 T13: -0.0306 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 2.7406 L22: 1.6579 REMARK 3 L33: 3.8411 L12: 1.1848 REMARK 3 L13: 2.3452 L23: -0.4137 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.1290 S13: 0.4339 REMARK 3 S21: -0.1131 S22: 0.1358 S23: -1.1052 REMARK 3 S31: 0.2540 S32: 0.7289 S33: -0.0635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 151:166) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7592 4.2638 7.4197 REMARK 3 T TENSOR REMARK 3 T11: 0.7893 T22: 0.4547 REMARK 3 T33: 0.5963 T12: -0.1086 REMARK 3 T13: 0.0611 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 5.1175 L22: 1.7724 REMARK 3 L33: 6.3463 L12: -1.0706 REMARK 3 L13: -2.8982 L23: 2.7008 REMARK 3 S TENSOR REMARK 3 S11: 0.2270 S12: -0.9049 S13: -0.6622 REMARK 3 S21: -0.0793 S22: 0.2826 S23: 0.4325 REMARK 3 S31: 0.2222 S32: 0.1127 S33: -0.4285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 167:176) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0720 2.1507 -14.4878 REMARK 3 T TENSOR REMARK 3 T11: 1.0846 T22: 0.3876 REMARK 3 T33: 0.9184 T12: -0.1853 REMARK 3 T13: -0.1817 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.5089 L22: 3.1229 REMARK 3 L33: 3.8645 L12: 0.1387 REMARK 3 L13: 0.7129 L23: 3.2178 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 0.2758 S13: -0.7184 REMARK 3 S21: -0.4242 S22: -0.3955 S23: 0.5070 REMARK 3 S31: 0.6585 S32: -0.0127 S33: 0.1974 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 177:247) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2219 12.3417 -11.9544 REMARK 3 T TENSOR REMARK 3 T11: 0.5429 T22: 0.2989 REMARK 3 T33: 0.3432 T12: -0.1172 REMARK 3 T13: -0.0987 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.4360 L22: 1.2887 REMARK 3 L33: 1.9151 L12: -0.1767 REMARK 3 L13: 0.0306 L23: -0.3031 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: 0.4018 S13: -0.4971 REMARK 3 S21: -0.7538 S22: 0.1317 S23: 0.3032 REMARK 3 S31: 1.1733 S32: -0.4665 S33: -0.1430 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 248:344) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6005 20.0277 8.2885 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.2313 REMARK 3 T33: 0.2165 T12: -0.0060 REMARK 3 T13: -0.0105 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.4236 L22: 1.9122 REMARK 3 L33: 1.2438 L12: -0.5830 REMARK 3 L13: 0.3814 L23: -0.2787 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.1978 S13: 0.0229 REMARK 3 S21: 0.0395 S22: 0.1021 S23: -0.2699 REMARK 3 S31: 0.0517 S32: 0.0947 S33: -0.0527 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESSEQ 1:9) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3419 10.0808 -9.5437 REMARK 3 T TENSOR REMARK 3 T11: 0.4716 T22: 0.2315 REMARK 3 T33: 0.2639 T12: 0.0498 REMARK 3 T13: 0.0104 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.9178 L22: 6.7940 REMARK 3 L33: 4.1036 L12: -0.3614 REMARK 3 L13: 0.7495 L23: -0.5348 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.0694 S13: 0.0551 REMARK 3 S21: -0.2654 S22: -0.1416 S23: -0.4150 REMARK 3 S31: 0.9834 S32: 0.5606 S33: -0.1641 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANOMALOUS DATA WAS USED FOR REFINEMENT. REMARK 3 SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS REMARK 3 COLUMNS. REMARK 4 REMARK 4 5HH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA-FORMATE AND 20% PEG3350, PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.81650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.72475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.90825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 GLU A 119 REMARK 465 THR A 120 REMARK 465 ILE A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 THR A 124 REMARK 465 LYS A 125 REMARK 465 LYS A 126 REMARK 465 LYS A 127 REMARK 465 SER A 156 REMARK 465 ASN A 157 REMARK 465 SER A 158 REMARK 465 ASP A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 216 REMARK 465 SER A 217 REMARK 465 GLY A 218 REMARK 465 GLN A 219 REMARK 465 SER A 220 REMARK 465 GLN A 221 REMARK 465 THR A 222 REMARK 465 LEU A 223 REMARK 465 ASP A 224 REMARK 465 LEU A 225 REMARK 465 PRO A 226 REMARK 465 LYS A 227 REMARK 465 PRO A 228 REMARK 465 PRO A 229 REMARK 465 GLU A 230 REMARK 465 GLY A 231 REMARK 465 LYS A 232 REMARK 465 LYS A 233 REMARK 465 LEU A 234 REMARK 465 GLU A 345 REMARK 465 LEU A 346 REMARK 465 ALA A 347 REMARK 465 ASP A 348 REMARK 465 GLY A 349 REMARK 465 SER P 10 REMARK 465 THR P 11 REMARK 465 GLY P 12 REMARK 465 GLY P 13 REMARK 465 LYS P 14 REMARK 465 ALA P 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS P 9 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 -62.99 -92.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 674 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 CYS A 172 SG 105.4 REMARK 620 3 HIS A 191 ND1 105.2 88.4 REMARK 620 4 CYS A 194 SG 133.4 116.1 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 183 SG REMARK 620 2 CYS A 186 SG 103.3 REMARK 620 3 CYS A 209 SG 110.1 114.4 REMARK 620 4 CYS A 212 SG 105.1 111.4 111.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 DBREF 5HH7 A 118 349 UNP Q9SU24 ORC1B_ARATH 118 349 DBREF 5HH7 P 1 15 PDB 5HH7 5HH7 1 15 SEQADV 5HH7 SER A 117 UNP Q9SU24 EXPRESSION TAG SEQRES 1 A 233 SER SER GLU THR ILE LYS LYS THR LYS LYS LYS LYS ARG SEQRES 2 A 233 VAL TYR TYR ASN LYS VAL GLU PHE ASP GLU THR GLU PHE SEQRES 3 A 233 GLU ILE GLY ASP ASP VAL TYR VAL LYS ARG ARG GLU ASP SEQRES 4 A 233 SER ASN SER ASP GLU GLU GLU ASP PRO GLU ILE GLU ASP SEQRES 5 A 233 CYS GLN ILE CYS PHE LYS SER ASP THR ASN ILE MET ILE SEQRES 6 A 233 GLU CYS ASP ASP CYS LEU GLY GLY PHE HIS LEU LYS CYS SEQRES 7 A 233 LEU LYS PRO PRO LEU LYS GLU VAL PRO GLU GLY ASP TRP SEQRES 8 A 233 ILE CYS GLN PHE CYS GLU VAL LYS LYS SER GLY GLN SER SEQRES 9 A 233 GLN THR LEU ASP LEU PRO LYS PRO PRO GLU GLY LYS LYS SEQRES 10 A 233 LEU ALA ARG THR MET ARG GLU LYS LEU LEU SER GLY ASP SEQRES 11 A 233 LEU TRP ALA ALA ARG ILE ASP LYS LEU TRP LYS GLU VAL SEQRES 12 A 233 ASP ASP GLY VAL TYR TRP ILE ARG ALA ARG TRP TYR MET SEQRES 13 A 233 ILE PRO GLU GLU THR VAL SER GLY ARG GLN PRO HIS ASN SEQRES 14 A 233 LEU LYS ARG GLU LEU TYR LEU THR ASN ASP PHE ALA ASP SEQRES 15 A 233 ILE GLU MET GLU CYS ILE LEU ARG HIS CYS SER VAL LYS SEQRES 16 A 233 CYS PRO LYS GLU PHE SER LYS ALA SER ASN ASP GLY ASP SEQRES 17 A 233 ASP VAL PHE LEU CYS GLU TYR GLU TYR ASP VAL HIS TRP SEQRES 18 A 233 ARG SER PHE LYS ARG LEU ALA GLU LEU ALA ASP GLY SEQRES 1 P 15 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 P 15 LYS ALA HET ZN A 400 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *189(H2 O) HELIX 1 AA1 LYS A 193 LEU A 195 5 3 HELIX 2 AA2 CYS A 209 LYS A 215 1 7 HELIX 3 AA3 THR A 237 SER A 244 1 8 HELIX 4 AA4 ILE A 273 THR A 277 5 5 HELIX 5 AA5 CYS A 312 SER A 317 1 6 HELIX 6 AA6 LYS A 318 SER A 320 5 3 SHEET 1 AA1 5 ARG A 129 TYR A 132 0 SHEET 2 AA1 5 TRP A 248 GLU A 258 -1 O LEU A 255 N TYR A 132 SHEET 3 AA1 5 ASP A 147 VAL A 150 -1 N VAL A 150 O TRP A 248 SHEET 4 AA1 5 ILE A 304 LYS A 311 -1 O ARG A 306 N TYR A 149 SHEET 5 AA1 5 VAL A 326 LEU A 328 1 O PHE A 327 N LYS A 311 SHEET 1 AA2 6 ARG A 129 TYR A 132 0 SHEET 2 AA2 6 TRP A 248 GLU A 258 -1 O LEU A 255 N TYR A 132 SHEET 3 AA2 6 TYR A 264 MET A 272 -1 O TYR A 271 N ALA A 249 SHEET 4 AA2 6 TYR A 291 GLU A 300 -1 O ALA A 297 N ALA A 268 SHEET 5 AA2 6 TYR A 331 ASP A 334 1 O TYR A 331 N LEU A 292 SHEET 6 AA2 6 SER A 339 ARG A 342 -1 O LYS A 341 N GLU A 332 SHEET 1 AA3 2 LYS A 134 PHE A 137 0 SHEET 2 AA3 2 THR A 140 GLU A 143 -1 O THR A 140 N PHE A 137 SHEET 1 AA4 2 MET A 180 GLU A 182 0 SHEET 2 AA4 2 GLY A 189 HIS A 191 -1 O PHE A 190 N ILE A 181 LINK SG CYS A 169 ZN ZN A 400 1555 1555 2.78 LINK SG CYS A 172 ZN ZN A 400 1555 1555 2.81 LINK SG CYS A 183 ZN ZN A 401 1555 1555 2.57 LINK SG CYS A 186 ZN ZN A 401 1555 1555 2.66 LINK ND1 HIS A 191 ZN ZN A 400 1555 1555 2.60 LINK SG CYS A 194 ZN ZN A 400 1555 1555 2.78 LINK SG CYS A 209 ZN ZN A 401 1555 1555 2.60 LINK SG CYS A 212 ZN ZN A 401 1555 1555 2.64 CISPEP 1 LYS A 196 PRO A 197 0 0.03 SITE 1 AC1 4 CYS A 169 CYS A 172 HIS A 191 CYS A 194 SITE 1 AC2 4 CYS A 183 CYS A 186 CYS A 209 CYS A 212 CRYST1 64.408 64.408 79.633 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012558 0.00000