HEADER TRANSFERASE 12-JAN-16 5HIL TITLE CRYSTAL STRUCTURE OF GLYCINE SARCOSINE N-METHYLTRANSFERASE FROM TITLE 2 METHANOHALOPHILUS PORTUCALENSIS IN COMPLEX WITH S- TITLE 3 ADENOSYLHOMOCYSTEINE AND SARCOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE SARCOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.156; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOHALOPHILUS PORTUCALENSIS FDF-1; SOURCE 3 ORGANISM_TAXID: 523843; SOURCE 4 STRAIN: FDF-1; SOURCE 5 GENE: GSMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASES (SAM OR ADOMET- KEYWDS 2 MTASE), CLASS I, MONOMETHYLATION OF GLYCINE AND SARCOSINE, RATE- KEYWDS 3 LIMITING ENZYME IN BETAINE BIOSYNTHESIS, BETAINE-MEDIATED FEEDBACK KEYWDS 4 INHIBITION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN REVDAT 3 08-NOV-23 5HIL 1 REMARK REVDAT 2 18-JAN-17 5HIL 1 JRNL REVDAT 1 23-NOV-16 5HIL 0 JRNL AUTH Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN JRNL TITL STRUCTURAL ANALYSIS OF GLYCINE SARCOSINE N-METHYLTRANSFERASE JRNL TITL 2 FROM METHANOHALOPHILUS PORTUCALENSIS REVEALS MECHANISTIC JRNL TITL 3 INSIGHTS INTO THE REGULATION OF METHYLTRANSFERASE ACTIVITY JRNL REF SCI REP V. 6 38071 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27934872 JRNL DOI 10.1038/SREP38071 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9151 - 4.2192 0.97 2922 159 0.1421 0.1805 REMARK 3 2 4.2192 - 3.3515 0.99 2886 148 0.1467 0.2047 REMARK 3 3 3.3515 - 2.9286 1.00 2868 154 0.1873 0.2428 REMARK 3 4 2.9286 - 2.6612 1.00 2843 154 0.2140 0.2766 REMARK 3 5 2.6612 - 2.4706 1.00 2848 147 0.2249 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2028 REMARK 3 ANGLE : 1.038 2735 REMARK 3 CHIRALITY : 0.039 288 REMARK 3 PLANARITY : 0.004 353 REMARK 3 DIHEDRAL : 14.017 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6376 42.6169 164.2935 REMARK 3 T TENSOR REMARK 3 T11: 0.3979 T22: 0.3675 REMARK 3 T33: 0.3522 T12: -0.0170 REMARK 3 T13: 0.0472 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 8.6876 L22: 5.6724 REMARK 3 L33: 8.7088 L12: -1.0844 REMARK 3 L13: 3.4123 L23: -3.4140 REMARK 3 S TENSOR REMARK 3 S11: -0.4401 S12: 0.2301 S13: -0.2414 REMARK 3 S21: -0.2129 S22: 0.5066 S23: 0.4811 REMARK 3 S31: -0.3831 S32: 0.0354 S33: -0.0526 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.2369 46.0702 153.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.5312 REMARK 3 T33: 0.6335 T12: 0.0059 REMARK 3 T13: -0.0326 T23: 0.0958 REMARK 3 L TENSOR REMARK 3 L11: 7.6239 L22: 3.2671 REMARK 3 L33: 4.5783 L12: 2.1326 REMARK 3 L13: -5.8114 L23: -2.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.3574 S13: -0.7057 REMARK 3 S21: 0.1097 S22: -0.2240 S23: -0.6807 REMARK 3 S31: -0.0908 S32: 1.2003 S33: 0.2306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3150 53.1424 152.8977 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.1949 REMARK 3 T33: 0.2323 T12: -0.0100 REMARK 3 T13: -0.0535 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 7.8313 L22: 5.4500 REMARK 3 L33: 7.3490 L12: -0.1710 REMARK 3 L13: -2.8277 L23: 0.7558 REMARK 3 S TENSOR REMARK 3 S11: -0.1868 S12: -0.1135 S13: 0.0875 REMARK 3 S21: 0.2478 S22: 0.1700 S23: -0.3963 REMARK 3 S31: -0.3148 S32: 0.3271 S33: 0.0192 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5907 53.1452 147.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.3610 T22: 0.4219 REMARK 3 T33: 0.3594 T12: 0.0400 REMARK 3 T13: -0.0138 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 9.5499 L22: 5.0021 REMARK 3 L33: 5.1911 L12: 6.8466 REMARK 3 L13: 7.0343 L23: 5.1058 REMARK 3 S TENSOR REMARK 3 S11: -0.5880 S12: -0.0167 S13: 0.2401 REMARK 3 S21: -0.8480 S22: 0.1988 S23: 0.1194 REMARK 3 S31: -0.7366 S32: -0.3931 S33: 0.4579 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8035 43.1162 141.6215 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.3564 REMARK 3 T33: 0.1808 T12: -0.0556 REMARK 3 T13: 0.0212 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 4.6555 L22: 6.8138 REMARK 3 L33: 3.4232 L12: 0.0974 REMARK 3 L13: 1.3377 L23: -2.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: 0.4090 S13: 0.0594 REMARK 3 S21: -0.8392 S22: 0.2434 S23: 0.0305 REMARK 3 S31: 0.0238 S32: -0.1581 S33: -0.1014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0761 29.1545 159.9151 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.3556 REMARK 3 T33: 0.3452 T12: -0.0042 REMARK 3 T13: 0.0141 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.8565 L22: 3.6565 REMARK 3 L33: 9.6050 L12: 0.0785 REMARK 3 L13: 0.1035 L23: 0.7076 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.2458 S13: -0.2859 REMARK 3 S21: 0.1607 S22: 0.0285 S23: -0.1678 REMARK 3 S31: 0.4206 S32: -0.0194 S33: 0.0023 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6138 33.5487 138.3347 REMARK 3 T TENSOR REMARK 3 T11: 0.6361 T22: 0.3704 REMARK 3 T33: 0.3284 T12: -0.0655 REMARK 3 T13: 0.1356 T23: -0.1207 REMARK 3 L TENSOR REMARK 3 L11: 7.4265 L22: 5.2260 REMARK 3 L33: 9.6407 L12: -1.7196 REMARK 3 L13: 3.9162 L23: -4.3387 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: 0.8134 S13: -0.4199 REMARK 3 S21: -1.3797 S22: 0.2640 S23: -0.6565 REMARK 3 S31: 0.5535 S32: 0.4704 S33: -0.1368 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2207 33.0101 150.5841 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.3318 REMARK 3 T33: 0.4313 T12: -0.0165 REMARK 3 T13: 0.0821 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 5.0672 L22: 6.4310 REMARK 3 L33: 9.7963 L12: -3.7604 REMARK 3 L13: 5.8881 L23: -6.4018 REMARK 3 S TENSOR REMARK 3 S11: 0.2986 S12: 0.1455 S13: -0.4986 REMARK 3 S21: -0.6726 S22: -0.3079 S23: -0.2764 REMARK 3 S31: 0.6509 S32: 0.9716 S33: -0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1XVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: GSMT (6.6 MG/ML) IN REMARK 280 100 MM TES PH 7.3, 2 M KCL, 1 MM EDTA, 1 MM 2-MERCAPTOETHANOL, REMARK 280 0.1 MM SAH AND 0.2 M BETAINE. CRYSTALLIZATION REAGENT: 0.1 M REMARK 280 TRIS-HCL PH 8.5 AND 1.5 M SODIUM CHLORIDE. SAH AND SARCOSINE REMARK 280 WERE SOAKED INTO CRYSTALS BEFORE DATA COLLECTION., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.94850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.56200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.79450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.94850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.56200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.79450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.94850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.56200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.79450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.94850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.56200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.79450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 ASN A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 GLU A 15 REMARK 465 VAL A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 ASP A 175 REMARK 465 GLY A 176 REMARK 465 TYR A 177 REMARK 465 SER A 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 SER A 179 OG REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 186 74.22 46.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HII RELATED DB: PDB REMARK 900 RELATED ID: 5HIJ RELATED DB: PDB REMARK 900 RELATED ID: 5HIK RELATED DB: PDB REMARK 900 RELATED ID: 5HIM RELATED DB: PDB REMARK 900 RELATED ID: 5GWX RELATED DB: PDB REMARK 900 RELATED ID: 5H02 RELATED DB: PDB DBREF 5HIL A 1 263 UNP F6KV61 F6KV61_9EURY 1 263 SEQADV 5HIL MET A -20 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL GLY A -19 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL SER A -18 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL SER A -17 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -16 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -15 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -14 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -13 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -12 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -11 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL SER A -10 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL SER A -9 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL GLY A -8 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL LEU A -7 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL VAL A -6 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL PRO A -5 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL ARG A -4 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL GLY A -3 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL SER A -2 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL HIS A -1 UNP F6KV61 EXPRESSION TAG SEQADV 5HIL MET A 0 UNP F6KV61 EXPRESSION TAG SEQRES 1 A 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 284 LEU VAL PRO ARG GLY SER HIS MET MET ASN GLN TYR GLY SEQRES 3 A 284 LYS GLN ASP PHE GLY ASP ASN PRO ILE GLU VAL ARG GLU SEQRES 4 A 284 SER ASP HIS TYR GLU GLU GLU TYR VAL LEU GLY PHE VAL SEQRES 5 A 284 ASP LYS TRP ASP GLU LEU ILE ASP TRP GLU SER ARG ALA SEQRES 6 A 284 GLU SER GLU GLY ASP THR ILE ILE ASN ILE LEU LYS GLU SEQRES 7 A 284 ARG GLY VAL LYS LYS VAL LEU ASP VAL ALA THR GLY THR SEQRES 8 A 284 GLY PHE ASN SER VAL ARG LEU LEU GLN ALA GLY PHE ASP SEQRES 9 A 284 VAL VAL SER ALA ASP GLY SER ALA GLU MET LEU VAL LYS SEQRES 10 A 284 ALA PHE ASP ASN ALA ARG ASP HIS GLY TYR LEU MET ARG SEQRES 11 A 284 THR VAL GLN ALA ASP TRP ARG TRP MET ASN LYS ASP ILE SEQRES 12 A 284 HIS ASP LYS PHE ASP ALA ILE VAL CYS LEU GLY ASN SER SEQRES 13 A 284 PHE THR HIS LEU PHE ASP GLU GLY ASP ARG ARG LYS ALA SEQRES 14 A 284 LEU ALA GLU PHE TYR ALA LEU LEU LYS HIS ASP GLY VAL SEQRES 15 A 284 LEU LEU LEU ASP GLN ARG ASN TYR ASP ALA ILE LEU ASP SEQRES 16 A 284 ASP GLY TYR SER SER LYS HIS ALA HIS TYR TYR CYS GLY SEQRES 17 A 284 ASP THR VAL SER VAL TYR PRO GLU HIS VAL ASP GLU GLY SEQRES 18 A 284 LEU ALA ARG PHE LYS TYR GLU PHE SER ASP GLY SER VAL SEQRES 19 A 284 TYR ASN LEU ASN MET PHE PRO LEU ARG LYS ASP TYR THR SEQRES 20 A 284 ARG GLN LEU LEU HIS GLU VAL GLY PHE GLN GLU ILE ASN SEQRES 21 A 284 THR LEU GLY ASP PHE LYS GLU THR TYR LYS GLU ASP GLU SEQRES 22 A 284 PRO ASP PHE PHE LEU HIS VAL ALA GLU LYS ASN HET SAH A 301 26 HET SAR A 302 6 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SAR SARCOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 SAR C3 H7 N O2 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *59(H2 O) HELIX 1 AA1 ASP A 20 ILE A 38 1 19 HELIX 2 AA2 ASP A 39 GLU A 47 1 9 HELIX 3 AA3 ASP A 49 GLU A 57 1 9 HELIX 4 AA4 GLY A 71 GLY A 81 1 11 HELIX 5 AA5 SER A 90 HIS A 104 1 15 HELIX 6 AA6 ASP A 114 ASP A 121 5 8 HELIX 7 AA7 SER A 135 LEU A 139 5 5 HELIX 8 AA8 ASP A 141 LEU A 155 1 15 HELIX 9 AA9 ASN A 168 ASP A 174 1 7 HELIX 10 AB1 ARG A 222 GLY A 234 1 13 SHEET 1 AA1 7 THR A 110 GLN A 112 0 SHEET 2 AA1 7 ASP A 83 ASP A 88 1 N SER A 86 O VAL A 111 SHEET 3 AA1 7 LYS A 62 ASP A 65 1 N ASP A 65 O ALA A 87 SHEET 4 AA1 7 PHE A 126 CYS A 131 1 O ALA A 128 N LEU A 64 SHEET 5 AA1 7 LEU A 156 ARG A 167 1 O LEU A 163 N ILE A 129 SHEET 6 AA1 7 PHE A 255 GLU A 261 -1 O HIS A 258 N LEU A 164 SHEET 7 AA1 7 GLU A 237 ASP A 243 -1 N ASN A 239 O VAL A 259 SHEET 1 AA2 4 HIS A 183 TYR A 185 0 SHEET 2 AA2 4 VAL A 190 ASP A 198 -1 O VAL A 192 N HIS A 183 SHEET 3 AA2 4 LEU A 201 PHE A 208 -1 O ARG A 203 N HIS A 196 SHEET 4 AA2 4 VAL A 213 MET A 218 -1 O TYR A 214 N TYR A 206 SITE 1 AC1 18 ARG A 43 ALA A 67 GLY A 69 ASN A 73 SITE 2 AC1 18 ASP A 88 GLY A 89 SER A 90 MET A 93 SITE 3 AC1 18 ALA A 113 ASP A 114 TRP A 115 ARG A 116 SITE 4 AC1 18 LEU A 132 GLY A 133 SER A 135 EDO A 307 SITE 5 AC1 18 HOH A 415 HOH A 433 SITE 1 AC2 6 GLY A 133 ASN A 134 HIS A 138 ARG A 167 SITE 2 AC2 6 TYR A 206 HOH A 441 SITE 1 AC3 5 GLU A 47 ILE A 51 ILE A 52 ASN A 73 SITE 2 AC3 5 ARG A 76 SITE 1 AC4 6 ASP A 35 TRP A 40 ASN A 100 HIS A 104 SITE 2 AC4 6 HOH A 432 HOH A 434 SITE 1 AC5 3 ARG A 167 ASN A 168 ASP A 254 SITE 1 AC6 3 ARG A 76 GLN A 79 HIS A 104 SITE 1 AC7 5 TRP A 34 ASP A 35 ARG A 43 THR A 70 SITE 2 AC7 5 SAH A 301 CRYST1 51.897 121.124 131.589 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019269 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007599 0.00000