HEADER TRANSFERASE 12-JAN-16 5HIM TITLE CRYSTAL STRUCTURE OF GLYCINE SARCOSINE N-METHYLTRANSFERASE FROM TITLE 2 METHANOHALOPHILUS PORTUCALENSIS IN COMPLEX WITH S- TITLE 3 ADENOSYLHOMOCYSTEINE AND DIMETHYLGLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE SARCOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.156; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOHALOPHILUS PORTUCALENSIS FDF-1; SOURCE 3 ORGANISM_TAXID: 523843; SOURCE 4 STRAIN: FDF-1; SOURCE 5 GENE: GSMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASES (SAM OR ADOMET- KEYWDS 2 MTASE), CLASS I, MONOMETHYLATION OF GLYCINE AND SARCOSINE, RATE- KEYWDS 3 LIMITING ENZYME IN BETAINE BIOSYNTHESIS, BETAINE-MEDIATED FEEDBACK KEYWDS 4 INHIBITION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN REVDAT 4 15-NOV-23 5HIM 1 REMARK REVDAT 3 08-NOV-23 5HIM 1 REMARK REVDAT 2 18-JAN-17 5HIM 1 JRNL REVDAT 1 23-NOV-16 5HIM 0 JRNL AUTH Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN JRNL TITL STRUCTURAL ANALYSIS OF GLYCINE SARCOSINE N-METHYLTRANSFERASE JRNL TITL 2 FROM METHANOHALOPHILUS PORTUCALENSIS REVEALS MECHANISTIC JRNL TITL 3 INSIGHTS INTO THE REGULATION OF METHYLTRANSFERASE ACTIVITY JRNL REF SCI REP V. 6 38071 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27934872 JRNL DOI 10.1038/SREP38071 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5308 - 4.2435 1.00 2987 160 0.1347 0.1988 REMARK 3 2 4.2435 - 3.3701 1.00 2875 150 0.1364 0.1822 REMARK 3 3 3.3701 - 2.9447 1.00 2847 144 0.1745 0.2120 REMARK 3 4 2.9447 - 2.6757 1.00 2829 142 0.1924 0.2292 REMARK 3 5 2.6757 - 2.4841 1.00 2806 155 0.1902 0.2416 REMARK 3 6 2.4841 - 2.3377 0.98 2745 140 0.1985 0.2511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2061 REMARK 3 ANGLE : 1.001 2775 REMARK 3 CHIRALITY : 0.039 290 REMARK 3 PLANARITY : 0.004 359 REMARK 3 DIHEDRAL : 14.566 734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7981 -14.6701 -24.6264 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.2008 REMARK 3 T33: 0.3523 T12: 0.0090 REMARK 3 T13: -0.0421 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.0284 L22: 4.4626 REMARK 3 L33: 8.0076 L12: -1.8310 REMARK 3 L13: -3.2713 L23: 3.2537 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.1322 S13: -0.3046 REMARK 3 S21: -0.2429 S22: -0.0536 S23: 0.4160 REMARK 3 S31: -0.1912 S32: -0.3908 S33: 0.1012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4174 -6.9080 -20.5437 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.1422 REMARK 3 T33: 0.2121 T12: 0.0043 REMARK 3 T13: -0.0279 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 7.2951 L22: 6.2649 REMARK 3 L33: 4.1597 L12: -0.7735 REMARK 3 L13: -0.2685 L23: -1.3364 REMARK 3 S TENSOR REMARK 3 S11: -0.2094 S12: -0.0024 S13: -0.0176 REMARK 3 S21: 0.0354 S22: 0.1412 S23: 0.0946 REMARK 3 S31: -0.2475 S32: -0.0416 S33: 0.0588 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7979 -17.3001 -10.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.3109 REMARK 3 T33: 0.1908 T12: 0.0469 REMARK 3 T13: 0.0134 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 4.6221 L22: 7.2906 REMARK 3 L33: 4.8445 L12: -0.9021 REMARK 3 L13: 0.1636 L23: 1.3888 REMARK 3 S TENSOR REMARK 3 S11: -0.1817 S12: -0.3201 S13: 0.1191 REMARK 3 S21: 0.8265 S22: 0.2621 S23: -0.0409 REMARK 3 S31: -0.0652 S32: 0.2615 S33: -0.0744 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2709 -31.6674 -28.2514 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.3878 REMARK 3 T33: 0.3410 T12: 0.0092 REMARK 3 T13: 0.0004 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.8728 L22: 3.3678 REMARK 3 L33: 2.8409 L12: 0.3435 REMARK 3 L13: -0.6633 L23: 0.7094 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.2443 S13: -0.2475 REMARK 3 S21: -0.0854 S22: 0.0858 S23: 0.1708 REMARK 3 S31: 0.3919 S32: -0.0924 S33: -0.0727 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8607 -26.8309 -6.5754 REMARK 3 T TENSOR REMARK 3 T11: 0.7066 T22: 0.3528 REMARK 3 T33: 0.3576 T12: 0.0965 REMARK 3 T13: 0.1703 T23: 0.1292 REMARK 3 L TENSOR REMARK 3 L11: 6.0995 L22: 4.1101 REMARK 3 L33: 6.5101 L12: 1.0813 REMARK 3 L13: 3.3075 L23: 2.1918 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: -0.7112 S13: -0.3702 REMARK 3 S21: 1.3222 S22: 0.2629 S23: 0.8443 REMARK 3 S31: 0.5174 S32: -0.4768 S33: -0.1395 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3236 -27.5309 -18.9994 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.2987 REMARK 3 T33: 0.3931 T12: -0.0198 REMARK 3 T13: 0.0846 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.0716 L22: 5.9972 REMARK 3 L33: 9.4288 L12: 3.3009 REMARK 3 L13: 5.7528 L23: 5.5235 REMARK 3 S TENSOR REMARK 3 S11: 0.3021 S12: -0.1390 S13: -0.2270 REMARK 3 S21: 0.6447 S22: -0.3831 S23: 0.4895 REMARK 3 S31: 0.6007 S32: -0.8183 S33: -0.1591 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.338 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1XVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: GSMT (6.6 MG/ML) IN REMARK 280 100 MM TES PH 7.3, 2 M KCL, 1 MM EDTA, 1 MM 2-MERCAPTOETHANOL, REMARK 280 0.1 MM SAH AND 0.2 M BETAINE. CRYSTALLIZATION REAGENT: 0.1 M REMARK 280 TRIS-HCL PH 8.5 AND 1.5 M SODIUM CHLORIDE. SAH AND REMARK 280 DIMETHYLGLYCINE WERE SOAKED INTO CRYSTALS BEFORE DATA REMARK 280 COLLECTION., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.98750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.60950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.84300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.98750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.60950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.84300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.98750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.60950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.84300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.98750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.60950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.84300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 ASN A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 GLU A 15 REMARK 465 VAL A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 GLY A 176 REMARK 465 TYR A 177 REMARK 465 SER A 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 117 61.85 -152.00 REMARK 500 CYS A 186 72.56 53.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HII RELATED DB: PDB REMARK 900 RELATED ID: 5HIJ RELATED DB: PDB REMARK 900 RELATED ID: 5HIK RELATED DB: PDB REMARK 900 RELATED ID: 5HIL RELATED DB: PDB REMARK 900 RELATED ID: 5GWX RELATED DB: PDB REMARK 900 RELATED ID: 5H02 RELATED DB: PDB DBREF 5HIM A 1 263 UNP F6KV61 F6KV61_9EURY 1 263 SEQADV 5HIM MET A -20 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM GLY A -19 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM SER A -18 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM SER A -17 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -16 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -15 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -14 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -13 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -12 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -11 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM SER A -10 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM SER A -9 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM GLY A -8 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM LEU A -7 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM VAL A -6 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM PRO A -5 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM ARG A -4 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM GLY A -3 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM SER A -2 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM HIS A -1 UNP F6KV61 EXPRESSION TAG SEQADV 5HIM MET A 0 UNP F6KV61 EXPRESSION TAG SEQRES 1 A 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 284 LEU VAL PRO ARG GLY SER HIS MET MET ASN GLN TYR GLY SEQRES 3 A 284 LYS GLN ASP PHE GLY ASP ASN PRO ILE GLU VAL ARG GLU SEQRES 4 A 284 SER ASP HIS TYR GLU GLU GLU TYR VAL LEU GLY PHE VAL SEQRES 5 A 284 ASP LYS TRP ASP GLU LEU ILE ASP TRP GLU SER ARG ALA SEQRES 6 A 284 GLU SER GLU GLY ASP THR ILE ILE ASN ILE LEU LYS GLU SEQRES 7 A 284 ARG GLY VAL LYS LYS VAL LEU ASP VAL ALA THR GLY THR SEQRES 8 A 284 GLY PHE ASN SER VAL ARG LEU LEU GLN ALA GLY PHE ASP SEQRES 9 A 284 VAL VAL SER ALA ASP GLY SER ALA GLU MET LEU VAL LYS SEQRES 10 A 284 ALA PHE ASP ASN ALA ARG ASP HIS GLY TYR LEU MET ARG SEQRES 11 A 284 THR VAL GLN ALA ASP TRP ARG TRP MET ASN LYS ASP ILE SEQRES 12 A 284 HIS ASP LYS PHE ASP ALA ILE VAL CYS LEU GLY ASN SER SEQRES 13 A 284 PHE THR HIS LEU PHE ASP GLU GLY ASP ARG ARG LYS ALA SEQRES 14 A 284 LEU ALA GLU PHE TYR ALA LEU LEU LYS HIS ASP GLY VAL SEQRES 15 A 284 LEU LEU LEU ASP GLN ARG ASN TYR ASP ALA ILE LEU ASP SEQRES 16 A 284 ASP GLY TYR SER SER LYS HIS ALA HIS TYR TYR CYS GLY SEQRES 17 A 284 ASP THR VAL SER VAL TYR PRO GLU HIS VAL ASP GLU GLY SEQRES 18 A 284 LEU ALA ARG PHE LYS TYR GLU PHE SER ASP GLY SER VAL SEQRES 19 A 284 TYR ASN LEU ASN MET PHE PRO LEU ARG LYS ASP TYR THR SEQRES 20 A 284 ARG GLN LEU LEU HIS GLU VAL GLY PHE GLN GLU ILE ASN SEQRES 21 A 284 THR LEU GLY ASP PHE LYS GLU THR TYR LYS GLU ASP GLU SEQRES 22 A 284 PRO ASP PHE PHE LEU HIS VAL ALA GLU LYS ASN HET SAH A 301 26 HET DMG A 302 7 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM DMG N,N-DIMETHYLGLYCINE HETNAM EDO 1,2-ETHANEDIOL HETSYN DMG DIMETHYLGLYCINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 DMG C4 H9 N O2 FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 HOH *78(H2 O) HELIX 1 AA1 ASP A 20 ILE A 38 1 19 HELIX 2 AA2 ASP A 39 GLY A 48 1 10 HELIX 3 AA3 ASP A 49 ARG A 58 1 10 HELIX 4 AA4 GLY A 71 GLY A 81 1 11 HELIX 5 AA5 SER A 90 HIS A 104 1 15 HELIX 6 AA6 ASP A 114 ASP A 121 5 8 HELIX 7 AA7 SER A 135 LEU A 139 5 5 HELIX 8 AA8 ASP A 141 LEU A 155 1 15 HELIX 9 AA9 ASN A 168 ASP A 175 1 8 HELIX 10 AB1 ARG A 222 VAL A 233 1 12 SHEET 1 AA1 7 THR A 110 GLN A 112 0 SHEET 2 AA1 7 ASP A 83 ASP A 88 1 N SER A 86 O VAL A 111 SHEET 3 AA1 7 LYS A 62 ASP A 65 1 N ASP A 65 O ALA A 87 SHEET 4 AA1 7 PHE A 126 CYS A 131 1 O ALA A 128 N LEU A 64 SHEET 5 AA1 7 LEU A 156 ARG A 167 1 O LEU A 163 N ILE A 129 SHEET 6 AA1 7 PHE A 255 GLU A 261 -1 O HIS A 258 N LEU A 164 SHEET 7 AA1 7 GLU A 237 ASP A 243 -1 N ASN A 239 O VAL A 259 SHEET 1 AA2 4 HIS A 183 TYR A 185 0 SHEET 2 AA2 4 VAL A 190 ASP A 198 -1 O VAL A 192 N HIS A 183 SHEET 3 AA2 4 LEU A 201 PHE A 208 -1 O ARG A 203 N HIS A 196 SHEET 4 AA2 4 VAL A 213 MET A 218 -1 O TYR A 214 N TYR A 206 SITE 1 AC1 18 ARG A 43 ALA A 67 GLY A 69 ASN A 73 SITE 2 AC1 18 ASP A 88 GLY A 89 MET A 93 ALA A 113 SITE 3 AC1 18 ASP A 114 TRP A 115 ARG A 116 LEU A 132 SITE 4 AC1 18 GLY A 133 SER A 135 EDO A 306 HOH A 419 SITE 5 AC1 18 HOH A 435 HOH A 440 SITE 1 AC2 6 GLY A 133 ASN A 134 HIS A 138 ARG A 167 SITE 2 AC2 6 TYR A 206 MET A 218 SITE 1 AC3 4 GLU A 47 ILE A 51 ILE A 52 ASN A 73 SITE 1 AC4 4 ALA A 44 ARG A 76 GLN A 79 HIS A 104 SITE 1 AC5 5 TRP A 40 ASN A 100 HIS A 104 HOH A 405 SITE 2 AC5 5 HOH A 409 SITE 1 AC6 7 TRP A 34 ASP A 35 ARG A 43 THR A 70 SITE 2 AC6 7 SAH A 301 HOH A 419 HOH A 445 SITE 1 AC7 5 ARG A 167 ASN A 168 ILE A 172 HIS A 183 SITE 2 AC7 5 ASP A 254 SITE 1 AC8 3 ASP A 188 TYR A 248 HOH A 407 CRYST1 51.975 121.219 131.686 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007594 0.00000