HEADER DNA 12-JAN-16 5HIX TITLE COCRYSTAL STRUCTURE OF AN ANTI-PARALLEL DNA G-QUADRUPLEX AND A TETRA- TITLE 2 QUINOLINE FOLDAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMERIC G-QUADRUPLEX; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: OXYTRICHA NOVA KEYWDS DNA G-QUADRUPLEX, FOLDAMER, FOLDAMER-QUADRUPLEX, G-QUADRUPLEX KEYWDS 2 LIGANDS, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.K.MANDAL,B.BAPTISTE,B.LANGLOIS D'ESTAINTOT,B.KAUFFMANN,I.HUC REVDAT 2 10-JAN-24 5HIX 1 LINK REVDAT 1 02-NOV-16 5HIX 0 JRNL AUTH P.K.MANDAL,B.BAPTISTE,B.LANGLOIS D'ESTAINTOT,B.KAUFFMANN, JRNL AUTH 2 I.HUC JRNL TITL MULTIVALENT INTERACTIONS BETWEEN AN AROMATIC HELICAL JRNL TITL 2 FOLDAMER AND A DNA G-QUADRUPLEX IN THE SOLID STATE. JRNL REF CHEMBIOCHEM V. 17 1911 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27472456 JRNL DOI 10.1002/CBIC.201600281 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 3151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 192 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.5160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 506 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.99000 REMARK 3 B22 (A**2) : 31.99000 REMARK 3 B33 (A**2) : -63.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 650 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 329 ; 0.015 ; 0.021 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 994 ; 1.668 ; 1.341 REMARK 3 BOND ANGLES OTHERS (DEGREES): 772 ; 3.560 ; 3.065 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 72 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 375 ; 0.019 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 127 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 650 ; 6.467 ; 5.759 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 651 ; 6.463 ; 5.768 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 995 ; 9.296 ; 8.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1225 ;12.651 ;62.044 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1225 ;12.647 ;62.105 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.519 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.481 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 30.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: D(GGGGTTTTGGGG), 8-AMINO-2 REMARK 280 -QUINOLINECARBOXYLIC ACID, POTASSIUM CACODYLATE, MAGNESIUM REMARK 280 CHLORIDE, POTASSIUM CHLORIDE, SPERMINE, 2-METHYL-2,4-PENTANEDIOL REMARK 280 (MPD), PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.68650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.34325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.02975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 10 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG A 12 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 59.8 REMARK 620 3 DG A 11 O6 149.7 90.1 REMARK 620 4 DG A 12 O6 123.0 175.9 86.9 REMARK 620 5 DG B 3 O6 91.3 64.8 71.2 111.5 REMARK 620 6 DG B 4 O6 76.5 109.0 114.3 69.9 63.5 REMARK 620 7 DG B 9 O6 84.2 99.1 105.3 84.4 163.0 130.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 10 O6 129.1 REMARK 620 3 DG A 11 O6 121.8 95.7 REMARK 620 4 DG B 2 O6 147.8 66.5 77.5 REMARK 620 5 DG B 3 O6 82.4 143.4 77.5 76.9 REMARK 620 6 DG B 10 O6 94.4 68.0 67.1 117.6 136.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DG A 4 O6 69.1 REMARK 620 3 DG A 9 O6 167.0 99.2 REMARK 620 4 DG A 10 O6 120.2 154.7 72.8 REMARK 620 5 DG B 1 O6 97.5 81.8 74.5 117.5 REMARK 620 6 DG B 2 O6 77.4 130.1 107.9 74.8 66.9 REMARK 620 7 DG B 11 O6 82.1 94.0 105.0 66.1 175.6 117.2 REMARK 620 8 DG B 12 O6 113.5 58.5 61.8 97.5 111.5 169.0 64.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 DT A 5 O2 82.7 REMARK 620 3 DT A 7 O2 148.5 85.4 REMARK 620 4 DG A 9 O6 105.5 155.0 75.4 REMARK 620 5 DG B 1 O6 83.0 103.1 71.4 55.9 REMARK 620 6 DG B 12 O6 71.4 143.1 129.8 60.5 99.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61Q A 105 DBREF 5HIX A 1 12 PDB 5HIX 5HIX 1 12 DBREF 5HIX B 1 12 PDB 5HIX 5HIX 1 12 SEQRES 1 A 12 DG DG DG DG DT DT DT DT DG DG DG DG SEQRES 1 B 12 DG DG DG DG DT DT DT DT DG DG DG DG HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET 61Q A 105 75 HETNAM K POTASSIUM ION HETNAM 61Q 4-(3-AMINOPROPOXY)-8-({[4-(3-AMINOPROPOXY)-8-({[4-(3- HETNAM 2 61Q AMINOPROPOXY)-8-({[4-(3-AMINOPROPOXY)-8-NITROQUINOLIN- HETNAM 3 61Q 2-YL]CARBONYL}AMINO)QUINOLIN-2-YL]CARBONYL}AMINO) HETNAM 4 61Q QUINOLIN-2-YL]CARBONYL}AMINO)QUINOLINE-2-CARBOXYLIC HETNAM 5 61Q ACID FORMUL 3 K 4(K 1+) FORMUL 7 61Q C52 H52 N12 O11 FORMUL 8 HOH *10(H2 O) LINK O6 DG A 1 K K A 104 1555 1555 3.03 LINK O6 DG A 2 K K A 101 1555 1555 2.39 LINK O6 DG A 2 K K A 104 1555 1555 3.43 LINK O6 DG A 3 K K A 103 1555 1555 2.84 LINK O6 DG A 4 K K A 102 1555 1555 2.64 LINK O6 DG A 4 K K A 103 1555 1555 3.39 LINK O2 DT A 5 K K A 102 1555 1555 3.37 LINK O2 DT A 7 K K A 102 1555 1555 2.75 LINK O6 DG A 9 K K A 102 1555 1555 2.90 LINK O6 DG A 9 K K A 103 1555 1555 2.33 LINK O6 DG A 10 K K A 101 1555 1555 3.15 LINK O6 DG A 10 K K A 103 1555 1555 2.65 LINK O6 DG A 11 K K A 101 1555 1555 2.53 LINK O6 DG A 11 K K A 104 1555 1555 2.58 LINK O6 DG A 12 K K A 104 1555 1555 2.70 LINK K K A 101 O6 DG B 2 1555 1555 3.09 LINK K K A 101 O6 DG B 3 1555 1555 3.15 LINK K K A 101 O6 DG B 10 1555 1555 2.77 LINK K K A 102 O6 DG B 1 1555 1555 3.15 LINK K K A 102 O6 DG B 12 1555 1555 2.84 LINK K K A 103 O6 DG B 1 1555 1555 2.37 LINK K K A 103 O6 DG B 2 1555 1555 2.96 LINK K K A 103 O6 DG B 11 1555 1555 2.78 LINK K K A 103 O6 DG B 12 1555 1555 3.14 LINK K K A 104 O6 DG B 3 1555 1555 3.46 LINK K K A 104 O6 DG B 4 1555 1555 2.58 LINK K K A 104 O6 DG B 9 1555 1555 3.11 SITE 1 AC1 9 DG A 2 DG A 3 DG A 10 DG A 11 SITE 2 AC1 9 K A 104 DG B 2 DG B 3 DG B 10 SITE 3 AC1 9 DG B 11 SITE 1 AC2 7 DG A 4 DT A 5 DT A 7 DG A 9 SITE 2 AC2 7 K A 103 DG B 1 DG B 12 SITE 1 AC3 9 DG A 3 DG A 4 DG A 9 DG A 10 SITE 2 AC3 9 K A 102 DG B 1 DG B 2 DG B 11 SITE 3 AC3 9 DG B 12 SITE 1 AC4 9 DG A 1 DG A 2 DG A 11 DG A 12 SITE 2 AC4 9 K A 101 DG B 3 DG B 4 DG B 9 SITE 3 AC4 9 DG B 10 SITE 1 AC5 3 DG A 3 DT A 8 HOH A 204 CRYST1 31.701 31.701 97.373 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.031545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010270 0.00000