HEADER LIGASE 12-JAN-16 5HJ0 TITLE CRYSTAL STRUCTURE OF MIS18 'YIPPEE-LIKE' DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINETOCHORE PROTEIN MIS18; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: MIS18, SPCC970.12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENTROMERE, MIS18, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MEDINA-PRITCHARD,L.SUBRAMANIAN,R.ALLSHIRE,A.AROCKIA JEYAPRAKASH REVDAT 2 04-MAY-16 5HJ0 1 JRNL REVDAT 1 09-MAR-16 5HJ0 0 JRNL AUTH L.SUBRAMANIAN,B.MEDINA-PRITCHARD,R.BARTON,F.SPILLER, JRNL AUTH 2 R.KULASEGARAN-SHYLINI,G.RADAVICIUTE,R.C.ALLSHIRE, JRNL AUTH 3 A.AROCKIA JEYAPRAKASH JRNL TITL CENTROMERE LOCALIZATION AND FUNCTION OF MIS18 REQUIRES JRNL TITL 2 YIPPEE-LIKE DOMAIN-MEDIATED OLIGOMERIZATION. JRNL REF EMBO REP. V. 17 496 2016 JRNL REFN ESSN 1469-3178 JRNL PMID 26921242 JRNL DOI 10.15252/EMBR.201541520 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : 2.36000 REMARK 3 B33 (A**2) : -7.66000 REMARK 3 B12 (A**2) : 1.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.772 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2416 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3266 ; 1.753 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 8.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;39.345 ;24.786 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 405 ;21.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.590 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1825 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 2.052 ; 6.321 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1491 ; 3.516 ; 9.483 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 2.095 ; 6.420 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3470 ; 6.525 ;52.695 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 19 118 B 19 118 258 0.03 0.05 REMARK 3 2 A 19 118 C 19 118 274 0.10 0.05 REMARK 3 3 B 19 118 C 19 118 274 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7257 -4.3707 81.5389 REMARK 3 T TENSOR REMARK 3 T11: 0.2892 T22: 0.2570 REMARK 3 T33: 0.1047 T12: -0.0384 REMARK 3 T13: 0.0980 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.6968 L22: 3.5315 REMARK 3 L33: 4.6613 L12: -0.6625 REMARK 3 L13: 0.1289 L23: -1.7635 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: -0.0477 S13: -0.2309 REMARK 3 S21: -0.0660 S22: -0.0541 S23: 0.1626 REMARK 3 S31: 0.4764 S32: -0.0875 S33: 0.2424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0118 7.8444 56.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.3364 REMARK 3 T33: 0.1313 T12: 0.0608 REMARK 3 T13: 0.1325 T23: 0.1096 REMARK 3 L TENSOR REMARK 3 L11: 3.1499 L22: 0.7244 REMARK 3 L33: 5.7436 L12: -0.7670 REMARK 3 L13: -1.6047 L23: 0.1656 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.0241 S13: 0.1669 REMARK 3 S21: -0.2426 S22: -0.2495 S23: -0.2820 REMARK 3 S31: 0.0481 S32: 0.3259 S33: 0.2424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9130 13.3845 24.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.7190 T22: 0.6078 REMARK 3 T33: 0.2225 T12: 0.1140 REMARK 3 T13: 0.3099 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 2.4119 L22: 3.3714 REMARK 3 L33: 4.8939 L12: 0.4331 REMARK 3 L13: -2.8353 L23: 0.7111 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.1916 S13: 0.1854 REMARK 3 S21: -0.0079 S22: 0.0663 S23: 0.0920 REMARK 3 S31: -0.5180 S32: -0.4235 S33: -0.1298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5HJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-14; 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.2 - 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I03; I03 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2825; 0.9763 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M; DECTRIS REMARK 200 PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.10300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIFFRACTION QUALITY CRYSTALS WERE REMARK 280 OBTAINED USING WELL BUFFER CONTAINING 0.2 M AMMONIUM CHLORIDE/ REMARK 280 FORMATE/ACETATE/PHOSPHATE AND 20% PEG 3350 (WITH THE MEASURED PH REMARK 280 OF THE SOLUTION IN THE RANGE OF 6.2 TO 8). 15-20 MG/ML PROTEIN REMARK 280 SAMPLE WAS MIXED WITH THE WELL BUFFER IN A 1:1 RATIO., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.40367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.80733 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 48.80733 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.40367 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 121.06900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.40367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 TYR A 11 REMARK 465 ILE A 12 REMARK 465 ASP A 13 REMARK 465 PHE A 14 REMARK 465 LYS A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 17 REMARK 465 SER A 18 REMARK 465 LYS A 119 REMARK 465 THR A 120 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 TYR B 11 REMARK 465 ILE B 12 REMARK 465 ASP B 13 REMARK 465 PHE B 14 REMARK 465 LYS B 15 REMARK 465 LYS B 16 REMARK 465 GLU B 17 REMARK 465 SER B 18 REMARK 465 LYS B 119 REMARK 465 THR B 120 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 THR C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 SER C 7 REMARK 465 HIS C 8 REMARK 465 SER C 9 REMARK 465 GLY C 10 REMARK 465 TYR C 11 REMARK 465 ILE C 12 REMARK 465 ASP C 13 REMARK 465 PHE C 14 REMARK 465 LYS C 15 REMARK 465 LYS C 16 REMARK 465 GLU C 17 REMARK 465 SER C 18 REMARK 465 LYS C 119 REMARK 465 THR C 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 TYR B 45 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 46 CG CD1 CD2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 TYR C 45 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 55 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE C 106 CD1 PHE C 106 CE1 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 77 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 116 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU C 77 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PHE C 106 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -74.41 -82.78 REMARK 500 ASN A 36 -43.36 114.68 REMARK 500 ASP A 62 53.08 -97.96 REMARK 500 ASP A 102 19.66 56.71 REMARK 500 LYS B 27 -74.55 -85.66 REMARK 500 ASN B 36 -39.38 99.66 REMARK 500 VAL B 39 -62.47 -108.75 REMARK 500 LEU B 46 72.75 -69.13 REMARK 500 ASP B 62 49.46 -95.19 REMARK 500 SER B 67 172.31 -54.50 REMARK 500 LYS C 27 -71.00 -83.42 REMARK 500 ASN C 36 5.65 59.21 REMARK 500 LEU C 46 63.37 -105.75 REMARK 500 GLU C 55 -65.99 -21.80 REMARK 500 ASN C 83 13.37 51.09 REMARK 500 ASP C 102 19.58 57.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 36 ALA C 37 148.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 CYS A 28 SG 106.9 REMARK 620 3 CYS A 79 SG 117.6 90.5 REMARK 620 4 CYS A 82 SG 108.5 119.2 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 25 SG REMARK 620 2 CYS B 28 SG 119.1 REMARK 620 3 CYS B 79 SG 121.0 93.8 REMARK 620 4 CYS B 82 SG 100.1 117.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 25 SG REMARK 620 2 CYS C 28 SG 102.9 REMARK 620 3 CYS C 79 SG 116.4 98.4 REMARK 620 4 CYS C 82 SG 87.7 109.9 137.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1001 DBREF 5HJ0 A 1 120 UNP Q9P802 MIS18_SCHPO 1 120 DBREF 5HJ0 B 1 120 UNP Q9P802 MIS18_SCHPO 1 120 DBREF 5HJ0 C 1 120 UNP Q9P802 MIS18_SCHPO 1 120 SEQRES 1 A 120 MET SER GLN THR GLU THR SER HIS SER GLY TYR ILE ASP SEQRES 2 A 120 PHE LYS LYS GLU SER GLN PRO SER VAL PHE GLN CYS LYS SEQRES 3 A 120 LYS CYS PHE GLN ILE VAL GLY ASP SER ASN ALA TRP VAL SEQRES 4 A 120 ILE SER HIS ARG GLU TYR LEU SER PHE THR LEU SER ASP SEQRES 5 A 120 ALA VAL GLU ASN SER VAL ARG VAL GLU ASP THR PHE LYS SEQRES 6 A 120 ARG SER ASP ASP GLY LEU CYS VAL TYR SER GLU LEU SER SEQRES 7 A 120 CYS THR ARG CYS ASN GLU VAL ILE GLY LYS VAL TYR ASN SEQRES 8 A 120 SER THR PRO ILE TYR LEU ASP ASP ILE ARG ASP MET TYR SEQRES 9 A 120 THR PHE SER MET ASP LYS LEU GLN ALA TYR GLN LEU GLY SEQRES 10 A 120 ASN LYS THR SEQRES 1 B 120 MET SER GLN THR GLU THR SER HIS SER GLY TYR ILE ASP SEQRES 2 B 120 PHE LYS LYS GLU SER GLN PRO SER VAL PHE GLN CYS LYS SEQRES 3 B 120 LYS CYS PHE GLN ILE VAL GLY ASP SER ASN ALA TRP VAL SEQRES 4 B 120 ILE SER HIS ARG GLU TYR LEU SER PHE THR LEU SER ASP SEQRES 5 B 120 ALA VAL GLU ASN SER VAL ARG VAL GLU ASP THR PHE LYS SEQRES 6 B 120 ARG SER ASP ASP GLY LEU CYS VAL TYR SER GLU LEU SER SEQRES 7 B 120 CYS THR ARG CYS ASN GLU VAL ILE GLY LYS VAL TYR ASN SEQRES 8 B 120 SER THR PRO ILE TYR LEU ASP ASP ILE ARG ASP MET TYR SEQRES 9 B 120 THR PHE SER MET ASP LYS LEU GLN ALA TYR GLN LEU GLY SEQRES 10 B 120 ASN LYS THR SEQRES 1 C 120 MET SER GLN THR GLU THR SER HIS SER GLY TYR ILE ASP SEQRES 2 C 120 PHE LYS LYS GLU SER GLN PRO SER VAL PHE GLN CYS LYS SEQRES 3 C 120 LYS CYS PHE GLN ILE VAL GLY ASP SER ASN ALA TRP VAL SEQRES 4 C 120 ILE SER HIS ARG GLU TYR LEU SER PHE THR LEU SER ASP SEQRES 5 C 120 ALA VAL GLU ASN SER VAL ARG VAL GLU ASP THR PHE LYS SEQRES 6 C 120 ARG SER ASP ASP GLY LEU CYS VAL TYR SER GLU LEU SER SEQRES 7 C 120 CYS THR ARG CYS ASN GLU VAL ILE GLY LYS VAL TYR ASN SEQRES 8 C 120 SER THR PRO ILE TYR LEU ASP ASP ILE ARG ASP MET TYR SEQRES 9 C 120 THR PHE SER MET ASP LYS LEU GLN ALA TYR GLN LEU GLY SEQRES 10 C 120 ASN LYS THR HET ZN A1001 1 HET ZN B1001 1 HET ZN C1001 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *10(H2 O) HELIX 1 AA1 VAL A 54 ASN A 56 5 3 HELIX 2 AA2 PRO A 94 ARG A 101 5 8 HELIX 3 AA3 PRO B 94 ARG B 101 5 8 HELIX 4 AA4 PRO C 94 ARG C 101 5 8 SHEET 1 AA1 3 ILE A 31 ASP A 34 0 SHEET 2 AA1 3 SER A 21 CYS A 25 -1 N PHE A 23 O GLY A 33 SHEET 3 AA1 3 LEU A 111 GLN A 115 -1 O GLN A 112 N GLN A 24 SHEET 1 AA2 6 TRP A 38 HIS A 42 0 SHEET 2 AA2 6 SER A 47 LEU A 50 -1 O THR A 49 N ILE A 40 SHEET 3 AA2 6 TYR A 104 SER A 107 -1 O TYR A 104 N LEU A 50 SHEET 4 AA2 6 VAL A 85 SER A 92 -1 N LYS A 88 O THR A 105 SHEET 5 AA2 6 VAL A 73 CYS A 79 -1 N SER A 75 O VAL A 89 SHEET 6 AA2 6 VAL A 58 VAL A 60 -1 N ARG A 59 O SER A 78 SHEET 1 AA3 6 TRP A 38 HIS A 42 0 SHEET 2 AA3 6 SER A 47 LEU A 50 -1 O THR A 49 N ILE A 40 SHEET 3 AA3 6 TYR A 104 SER A 107 -1 O TYR A 104 N LEU A 50 SHEET 4 AA3 6 VAL A 85 SER A 92 -1 N LYS A 88 O THR A 105 SHEET 5 AA3 6 VAL A 73 CYS A 79 -1 N SER A 75 O VAL A 89 SHEET 6 AA3 6 LYS A 65 ARG A 66 -1 N LYS A 65 O TYR A 74 SHEET 1 AA4 3 ILE B 31 ASP B 34 0 SHEET 2 AA4 3 SER B 21 CYS B 25 -1 N PHE B 23 O GLY B 33 SHEET 3 AA4 3 LEU B 111 GLN B 115 -1 O GLN B 112 N GLN B 24 SHEET 1 AA5 6 TRP B 38 HIS B 42 0 SHEET 2 AA5 6 SER B 47 LEU B 50 -1 O THR B 49 N VAL B 39 SHEET 3 AA5 6 TYR B 104 SER B 107 -1 O TYR B 104 N LEU B 50 SHEET 4 AA5 6 VAL B 85 SER B 92 -1 N ILE B 86 O SER B 107 SHEET 5 AA5 6 VAL B 73 CYS B 79 -1 N SER B 75 O VAL B 89 SHEET 6 AA5 6 VAL B 58 VAL B 60 -1 N ARG B 59 O SER B 78 SHEET 1 AA6 6 TRP B 38 HIS B 42 0 SHEET 2 AA6 6 SER B 47 LEU B 50 -1 O THR B 49 N VAL B 39 SHEET 3 AA6 6 TYR B 104 SER B 107 -1 O TYR B 104 N LEU B 50 SHEET 4 AA6 6 VAL B 85 SER B 92 -1 N ILE B 86 O SER B 107 SHEET 5 AA6 6 VAL B 73 CYS B 79 -1 N SER B 75 O VAL B 89 SHEET 6 AA6 6 LYS B 65 ARG B 66 -1 N LYS B 65 O TYR B 74 SHEET 1 AA7 3 ILE C 31 ASP C 34 0 SHEET 2 AA7 3 SER C 21 CYS C 25 -1 N PHE C 23 O VAL C 32 SHEET 3 AA7 3 LEU C 111 GLN C 115 -1 O TYR C 114 N VAL C 22 SHEET 1 AA8 6 TRP C 38 HIS C 42 0 SHEET 2 AA8 6 SER C 47 LEU C 50 -1 O THR C 49 N ILE C 40 SHEET 3 AA8 6 TYR C 104 SER C 107 -1 O TYR C 104 N LEU C 50 SHEET 4 AA8 6 VAL C 85 SER C 92 -1 N ILE C 86 O SER C 107 SHEET 5 AA8 6 VAL C 73 CYS C 79 -1 N SER C 75 O VAL C 89 SHEET 6 AA8 6 VAL C 58 VAL C 60 -1 N ARG C 59 O SER C 78 SHEET 1 AA9 6 TRP C 38 HIS C 42 0 SHEET 2 AA9 6 SER C 47 LEU C 50 -1 O THR C 49 N ILE C 40 SHEET 3 AA9 6 TYR C 104 SER C 107 -1 O TYR C 104 N LEU C 50 SHEET 4 AA9 6 VAL C 85 SER C 92 -1 N ILE C 86 O SER C 107 SHEET 5 AA9 6 VAL C 73 CYS C 79 -1 N SER C 75 O VAL C 89 SHEET 6 AA9 6 LYS C 65 ARG C 66 -1 N LYS C 65 O TYR C 74 LINK SG CYS A 25 ZN ZN A1001 1555 1555 2.29 LINK SG CYS A 28 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 79 ZN ZN A1001 1555 1555 2.36 LINK SG CYS A 82 ZN ZN A1001 1555 1555 2.30 LINK SG CYS B 25 ZN ZN B1001 1555 1555 2.31 LINK SG CYS B 28 ZN ZN B1001 1555 1555 2.34 LINK SG CYS B 79 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 82 ZN ZN B1001 1555 1555 2.30 LINK SG CYS C 25 ZN ZN C1001 1555 1555 2.34 LINK SG CYS C 28 ZN ZN C1001 1555 1555 2.34 LINK SG CYS C 79 ZN ZN C1001 1555 1555 2.34 LINK SG CYS C 82 ZN ZN C1001 1555 1555 2.34 CISPEP 1 ASP A 69 GLY A 70 0 -6.46 CISPEP 2 ASP B 69 GLY B 70 0 -4.23 CISPEP 3 ASP C 69 GLY C 70 0 -5.33 SITE 1 AC1 4 CYS A 25 CYS A 28 CYS A 79 CYS A 82 SITE 1 AC2 4 CYS B 25 CYS B 28 CYS B 79 CYS B 82 SITE 1 AC3 4 CYS C 25 CYS C 28 CYS C 79 CYS C 82 CRYST1 121.069 121.069 73.211 90.00 90.00 120.00 P 31 1 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008260 0.004769 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013659 0.00000