data_5HJ1 # _entry.id 5HJ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5HJ1 WWPDB D_1000217064 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . _pdbx_database_related.db_id CSGID-idp95107 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HJ1 _pdbx_database_status.recvd_initial_deposition_date 2016-01-12 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Minasov, G.' 2 'Shuvalova, L.' 3 'Kiryukhina, O.' 4 'Dubrovska, I.' 5 'Grimshaw, S.' 6 'Kwon, K.' 7 'Anderson, W.F.' 8 'Center for Structural Genomics of Infectious Diseases (CSGID)' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of PDZ domain of pullulanase C protein of type II secretion system from Klebsiella pneumoniae in complex with fatty acid ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Filippova, E.V.' 1 primary 'Minasov, G.' 2 primary 'Shuvalova, L.' 3 primary 'Kiryukhina, O.' 4 primary 'Dubrovska, I.' 5 primary 'Grimshaw, S.' 6 primary 'Kwon, K.' 7 primary 'Anderson, W.F.' 8 primary 'Center for Structural Genomics of Infectious Diseases (CSGID)' 9 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5HJ1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.636 _cell.length_a_esd ? _cell.length_b 47.636 _cell.length_b_esd ? _cell.length_c 93.202 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pullulanase C protein' 11429.631 1 ? ? 'PDZ domain (UNP residues 181-280)' ? 2 non-polymer syn 'VACCENIC ACID' 282.461 1 ? ? ? ? 3 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAPLVKRLREQPQNILTYLSISPVLSGDKLLGYRLNPGKDASLFRQSGLQANDLAIALNGIDLRDQEQAQQALQNLAD (MSE)TEITLTVEREGQRHDIAFALGDE ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAPLVKRLREQPQNILTYLSISPVLSGDKLLGYRLNPGKDASLFRQSGLQANDLAIALNGIDLRDQEQAQQALQNLADM TEITLTVEREGQRHDIAFALGDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CSGID-idp95107 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 PRO n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 ARG n 1 9 LEU n 1 10 ARG n 1 11 GLU n 1 12 GLN n 1 13 PRO n 1 14 GLN n 1 15 ASN n 1 16 ILE n 1 17 LEU n 1 18 THR n 1 19 TYR n 1 20 LEU n 1 21 SER n 1 22 ILE n 1 23 SER n 1 24 PRO n 1 25 VAL n 1 26 LEU n 1 27 SER n 1 28 GLY n 1 29 ASP n 1 30 LYS n 1 31 LEU n 1 32 LEU n 1 33 GLY n 1 34 TYR n 1 35 ARG n 1 36 LEU n 1 37 ASN n 1 38 PRO n 1 39 GLY n 1 40 LYS n 1 41 ASP n 1 42 ALA n 1 43 SER n 1 44 LEU n 1 45 PHE n 1 46 ARG n 1 47 GLN n 1 48 SER n 1 49 GLY n 1 50 LEU n 1 51 GLN n 1 52 ALA n 1 53 ASN n 1 54 ASP n 1 55 LEU n 1 56 ALA n 1 57 ILE n 1 58 ALA n 1 59 LEU n 1 60 ASN n 1 61 GLY n 1 62 ILE n 1 63 ASP n 1 64 LEU n 1 65 ARG n 1 66 ASP n 1 67 GLN n 1 68 GLU n 1 69 GLN n 1 70 ALA n 1 71 GLN n 1 72 GLN n 1 73 ALA n 1 74 LEU n 1 75 GLN n 1 76 ASN n 1 77 LEU n 1 78 ALA n 1 79 ASP n 1 80 MSE n 1 81 THR n 1 82 GLU n 1 83 ILE n 1 84 THR n 1 85 LEU n 1 86 THR n 1 87 VAL n 1 88 GLU n 1 89 ARG n 1 90 GLU n 1 91 GLY n 1 92 GLN n 1 93 ARG n 1 94 HIS n 1 95 ASP n 1 96 ILE n 1 97 ALA n 1 98 PHE n 1 99 ALA n 1 100 LEU n 1 101 GLY n 1 102 ASP n 1 103 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 103 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene YP_002917874 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 484021 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG53 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0M1T516_KLEPN _struct_ref.pdbx_db_accession A0A0M1T516 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLVKRLREQPQNILTYLSISPVLSGDKLLGYRLNPGKDASLFRQSGLQANDLAIALNGIDLRDQEQAQQALQNLADMTEI TLTVEREGQRHDIAFALGDE ; _struct_ref.pdbx_align_begin 181 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5HJ1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A0M1T516 _struct_ref_seq.db_align_beg 181 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 181 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5HJ1 SER A 1 ? UNP A0A0M1T516 ? ? 'expression tag' 178 1 1 5HJ1 ASN A 2 ? UNP A0A0M1T516 ? ? 'expression tag' 179 2 1 5HJ1 ALA A 3 ? UNP A0A0M1T516 ? ? 'expression tag' 180 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VCA non-polymer . 'VACCENIC ACID' '(11E)-OCTADEC-11-ENOIC ACID' 'C18 H34 O2' 282.461 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HJ1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4 M Formate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5HJ1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17852 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 27.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 87.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.53 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.57 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 28.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.23 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.23 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.45 _refine.B_iso_max ? _refine.B_iso_mean 32.170 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. The ligand was identified based on the electron density maps and was not originally present in protein solution or crystallization conditions. Based on the results described by R. Mejia, et al., 1999 authors concluded that vaccenic acid is likely to bind to a protein. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5HJ1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 42.42 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16907 _refine.ls_number_reflns_R_free 848 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19340 _refine.ls_R_factor_R_free 0.22231 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19200 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.077 _refine.pdbx_overall_ESU_R_Free 0.079 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.181 _refine.overall_SU_ML 0.041 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 759 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 857 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 42.42 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.018 0.019 837 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 852 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.156 2.024 1129 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.029 3.000 1961 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.604 5.000 105 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.904 24.750 40 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.898 15.000 145 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.795 15.000 8 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.130 0.200 127 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.024 0.021 966 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.019 0.020 186 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.206 1.989 411 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.196 1.987 410 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.376 2.971 519 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.373 2.972 520 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.799 2.539 426 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.797 2.541 427 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.375 3.627 611 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.421 9.808 898 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.418 9.818 899 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.502 _refine_ls_shell.d_res_low 1.541 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_R_work 1229 _refine_ls_shell.percent_reflns_obs 99.61 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.224 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.204 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5HJ1 _struct.title ;Crystal structure of PDZ domain of pullulanase C protein of type II secretion system from Klebsiella pneumoniae in complex with fatty acid ; _struct.pdbx_descriptor 'Pullulanase C protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HJ1 _struct_keywords.text 'GspC protein, Structural Genomics, CSGID, Center for Structural Genomics of Infectious Diseases, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 4 ? ARG A 10 ? PRO A 181 ARG A 187 1 ? 7 HELX_P HELX_P2 AA2 ASN A 15 ? TYR A 19 ? ASN A 192 TYR A 196 1 ? 5 HELX_P HELX_P3 AA3 ASP A 66 ? ALA A 78 ? ASP A 243 ALA A 255 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASP 79 C ? ? ? 1_555 A MSE 80 N ? ? A ASP 256 A MSE 257 1_555 ? ? ? ? ? ? ? 1.340 ? covale2 covale both ? A MSE 80 C ? ? ? 1_555 A THR 81 N ? ? A MSE 257 A THR 258 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 20 ? SER A 27 ? LEU A 197 SER A 204 AA1 2 LYS A 30 ? PRO A 38 ? LYS A 207 PRO A 215 AA1 3 ASP A 54 ? LEU A 59 ? ASP A 231 LEU A 236 AA1 4 ILE A 62 ? ASP A 63 ? ILE A 239 ASP A 240 AA2 1 LEU A 20 ? SER A 27 ? LEU A 197 SER A 204 AA2 2 LYS A 30 ? PRO A 38 ? LYS A 207 PRO A 215 AA2 3 ASP A 54 ? LEU A 59 ? ASP A 231 LEU A 236 AA2 4 GLU A 82 ? ARG A 89 ? GLU A 259 ARG A 266 AA2 5 GLN A 92 ? ALA A 99 ? GLN A 269 ALA A 276 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 25 ? N VAL A 202 O LEU A 32 ? O LEU A 209 AA1 2 3 N TYR A 34 ? N TYR A 211 O ALA A 56 ? O ALA A 233 AA1 3 4 N LEU A 59 ? N LEU A 236 O ILE A 62 ? O ILE A 239 AA2 1 2 N VAL A 25 ? N VAL A 202 O LEU A 32 ? O LEU A 209 AA2 2 3 N TYR A 34 ? N TYR A 211 O ALA A 56 ? O ALA A 233 AA2 3 4 N LEU A 55 ? N LEU A 232 O GLU A 88 ? O GLU A 265 AA2 4 5 N LEU A 85 ? N LEU A 262 O ILE A 96 ? O ILE A 273 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id VCA _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue VCA A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TYR A 19 ? TYR A 196 . ? 1_555 ? 2 AC1 5 GLY A 28 ? GLY A 205 . ? 6_455 ? 3 AC1 5 PHE A 98 ? PHE A 275 . ? 1_555 ? 4 AC1 5 ALA A 99 ? ALA A 276 . ? 1_555 ? 5 AC1 5 LEU A 100 ? LEU A 277 . ? 1_555 ? # _atom_sites.entry_id 5HJ1 _atom_sites.fract_transf_matrix[1][1] 0.020993 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020993 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010729 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 178 ? ? ? A . n A 1 2 ASN 2 179 ? ? ? A . n A 1 3 ALA 3 180 ? ? ? A . n A 1 4 PRO 4 181 181 PRO PRO A . n A 1 5 LEU 5 182 182 LEU LEU A . n A 1 6 VAL 6 183 183 VAL VAL A . n A 1 7 LYS 7 184 184 LYS LYS A . n A 1 8 ARG 8 185 185 ARG ARG A . n A 1 9 LEU 9 186 186 LEU LEU A . n A 1 10 ARG 10 187 187 ARG ARG A . n A 1 11 GLU 11 188 188 GLU GLU A . n A 1 12 GLN 12 189 189 GLN GLN A . n A 1 13 PRO 13 190 190 PRO PRO A . n A 1 14 GLN 14 191 191 GLN GLN A . n A 1 15 ASN 15 192 192 ASN ASN A . n A 1 16 ILE 16 193 193 ILE ILE A . n A 1 17 LEU 17 194 194 LEU LEU A . n A 1 18 THR 18 195 195 THR THR A . n A 1 19 TYR 19 196 196 TYR TYR A . n A 1 20 LEU 20 197 197 LEU LEU A . n A 1 21 SER 21 198 198 SER SER A . n A 1 22 ILE 22 199 199 ILE ILE A . n A 1 23 SER 23 200 200 SER SER A . n A 1 24 PRO 24 201 201 PRO PRO A . n A 1 25 VAL 25 202 202 VAL VAL A . n A 1 26 LEU 26 203 203 LEU LEU A . n A 1 27 SER 27 204 204 SER SER A . n A 1 28 GLY 28 205 205 GLY GLY A . n A 1 29 ASP 29 206 206 ASP ASP A . n A 1 30 LYS 30 207 207 LYS LYS A . n A 1 31 LEU 31 208 208 LEU LEU A . n A 1 32 LEU 32 209 209 LEU LEU A . n A 1 33 GLY 33 210 210 GLY GLY A . n A 1 34 TYR 34 211 211 TYR TYR A . n A 1 35 ARG 35 212 212 ARG ARG A . n A 1 36 LEU 36 213 213 LEU LEU A . n A 1 37 ASN 37 214 214 ASN ASN A . n A 1 38 PRO 38 215 215 PRO PRO A . n A 1 39 GLY 39 216 216 GLY GLY A . n A 1 40 LYS 40 217 217 LYS LYS A . n A 1 41 ASP 41 218 218 ASP ASP A . n A 1 42 ALA 42 219 219 ALA ALA A . n A 1 43 SER 43 220 220 SER SER A . n A 1 44 LEU 44 221 221 LEU LEU A . n A 1 45 PHE 45 222 222 PHE PHE A . n A 1 46 ARG 46 223 223 ARG ARG A . n A 1 47 GLN 47 224 224 GLN GLN A . n A 1 48 SER 48 225 225 SER SER A . n A 1 49 GLY 49 226 226 GLY GLY A . n A 1 50 LEU 50 227 227 LEU LEU A . n A 1 51 GLN 51 228 228 GLN GLN A . n A 1 52 ALA 52 229 229 ALA ALA A . n A 1 53 ASN 53 230 230 ASN ASN A . n A 1 54 ASP 54 231 231 ASP ASP A . n A 1 55 LEU 55 232 232 LEU LEU A . n A 1 56 ALA 56 233 233 ALA ALA A . n A 1 57 ILE 57 234 234 ILE ILE A . n A 1 58 ALA 58 235 235 ALA ALA A . n A 1 59 LEU 59 236 236 LEU LEU A . n A 1 60 ASN 60 237 237 ASN ASN A . n A 1 61 GLY 61 238 238 GLY GLY A . n A 1 62 ILE 62 239 239 ILE ILE A . n A 1 63 ASP 63 240 240 ASP ASP A . n A 1 64 LEU 64 241 241 LEU LEU A . n A 1 65 ARG 65 242 242 ARG ARG A . n A 1 66 ASP 66 243 243 ASP ASP A . n A 1 67 GLN 67 244 244 GLN GLN A . n A 1 68 GLU 68 245 245 GLU GLU A . n A 1 69 GLN 69 246 246 GLN GLN A . n A 1 70 ALA 70 247 247 ALA ALA A . n A 1 71 GLN 71 248 248 GLN GLN A . n A 1 72 GLN 72 249 249 GLN GLN A . n A 1 73 ALA 73 250 250 ALA ALA A . n A 1 74 LEU 74 251 251 LEU LEU A . n A 1 75 GLN 75 252 252 GLN GLN A . n A 1 76 ASN 76 253 253 ASN ASN A . n A 1 77 LEU 77 254 254 LEU LEU A . n A 1 78 ALA 78 255 255 ALA ALA A . n A 1 79 ASP 79 256 256 ASP ASP A . n A 1 80 MSE 80 257 257 MSE MSE A . n A 1 81 THR 81 258 258 THR THR A . n A 1 82 GLU 82 259 259 GLU GLU A . n A 1 83 ILE 83 260 260 ILE ILE A . n A 1 84 THR 84 261 261 THR THR A . n A 1 85 LEU 85 262 262 LEU LEU A . n A 1 86 THR 86 263 263 THR THR A . n A 1 87 VAL 87 264 264 VAL VAL A . n A 1 88 GLU 88 265 265 GLU GLU A . n A 1 89 ARG 89 266 266 ARG ARG A . n A 1 90 GLU 90 267 267 GLU GLU A . n A 1 91 GLY 91 268 268 GLY GLY A . n A 1 92 GLN 92 269 269 GLN GLN A . n A 1 93 ARG 93 270 270 ARG ARG A . n A 1 94 HIS 94 271 271 HIS HIS A . n A 1 95 ASP 95 272 272 ASP ASP A . n A 1 96 ILE 96 273 273 ILE ILE A . n A 1 97 ALA 97 274 274 ALA ALA A . n A 1 98 PHE 98 275 275 PHE PHE A . n A 1 99 ALA 99 276 276 ALA ALA A . n A 1 100 LEU 100 277 277 LEU LEU A . n A 1 101 GLY 101 278 ? ? ? A . n A 1 102 ASP 102 279 ? ? ? A . n A 1 103 GLU 103 280 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VCA 1 301 1 VCA VCA A . C 3 HOH 1 401 165 HOH HOH A . C 3 HOH 2 402 197 HOH HOH A . C 3 HOH 3 403 189 HOH HOH A . C 3 HOH 4 404 2 HOH HOH A . C 3 HOH 5 405 172 HOH HOH A . C 3 HOH 6 406 142 HOH HOH A . C 3 HOH 7 407 3 HOH HOH A . C 3 HOH 8 408 192 HOH HOH A . C 3 HOH 9 409 92 HOH HOH A . C 3 HOH 10 410 175 HOH HOH A . C 3 HOH 11 411 140 HOH HOH A . C 3 HOH 12 412 131 HOH HOH A . C 3 HOH 13 413 106 HOH HOH A . C 3 HOH 14 414 195 HOH HOH A . C 3 HOH 15 415 145 HOH HOH A . C 3 HOH 16 416 89 HOH HOH A . C 3 HOH 17 417 99 HOH HOH A . C 3 HOH 18 418 86 HOH HOH A . C 3 HOH 19 419 76 HOH HOH A . C 3 HOH 20 420 56 HOH HOH A . C 3 HOH 21 421 194 HOH HOH A . C 3 HOH 22 422 199 HOH HOH A . C 3 HOH 23 423 88 HOH HOH A . C 3 HOH 24 424 1 HOH HOH A . C 3 HOH 25 425 132 HOH HOH A . C 3 HOH 26 426 164 HOH HOH A . C 3 HOH 27 427 149 HOH HOH A . C 3 HOH 28 428 112 HOH HOH A . C 3 HOH 29 429 74 HOH HOH A . C 3 HOH 30 430 68 HOH HOH A . C 3 HOH 31 431 81 HOH HOH A . C 3 HOH 32 432 83 HOH HOH A . C 3 HOH 33 433 4 HOH HOH A . C 3 HOH 34 434 100 HOH HOH A . C 3 HOH 35 435 183 HOH HOH A . C 3 HOH 36 436 110 HOH HOH A . C 3 HOH 37 437 153 HOH HOH A . C 3 HOH 38 438 71 HOH HOH A . C 3 HOH 39 439 141 HOH HOH A . C 3 HOH 40 440 96 HOH HOH A . C 3 HOH 41 441 152 HOH HOH A . C 3 HOH 42 442 108 HOH HOH A . C 3 HOH 43 443 90 HOH HOH A . C 3 HOH 44 444 163 HOH HOH A . C 3 HOH 45 445 111 HOH HOH A . C 3 HOH 46 446 55 HOH HOH A . C 3 HOH 47 447 191 HOH HOH A . C 3 HOH 48 448 69 HOH HOH A . C 3 HOH 49 449 119 HOH HOH A . C 3 HOH 50 450 190 HOH HOH A . C 3 HOH 51 451 70 HOH HOH A . C 3 HOH 52 452 28 HOH HOH A . C 3 HOH 53 453 80 HOH HOH A . C 3 HOH 54 454 93 HOH HOH A . C 3 HOH 55 455 77 HOH HOH A . C 3 HOH 56 456 167 HOH HOH A . C 3 HOH 57 457 160 HOH HOH A . C 3 HOH 58 458 72 HOH HOH A . C 3 HOH 59 459 73 HOH HOH A . C 3 HOH 60 460 97 HOH HOH A . C 3 HOH 61 461 125 HOH HOH A . C 3 HOH 62 462 102 HOH HOH A . C 3 HOH 63 463 94 HOH HOH A . C 3 HOH 64 464 193 HOH HOH A . C 3 HOH 65 465 196 HOH HOH A . C 3 HOH 66 466 79 HOH HOH A . C 3 HOH 67 467 198 HOH HOH A . C 3 HOH 68 468 104 HOH HOH A . C 3 HOH 69 469 138 HOH HOH A . C 3 HOH 70 470 101 HOH HOH A . C 3 HOH 71 471 84 HOH HOH A . C 3 HOH 72 472 98 HOH HOH A . C 3 HOH 73 473 103 HOH HOH A . C 3 HOH 74 474 75 HOH HOH A . C 3 HOH 75 475 144 HOH HOH A . C 3 HOH 76 476 135 HOH HOH A . C 3 HOH 77 477 146 HOH HOH A . C 3 HOH 78 478 150 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 80 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 257 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-02-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 17.7375 21.3786 29.7917 0.1553 ? -0.0029 ? 0.0758 ? 0.0456 ? 0.0469 ? 0.1349 ? 9.4067 ? -4.1647 ? -2.1965 ? 4.4491 ? -0.3477 ? 1.2533 ? 0.1475 ? -0.2225 ? -0.0074 ? -0.1951 ? -0.0973 ? -0.0706 ? -0.0518 ? 0.1328 ? -0.0503 ? 2 'X-RAY DIFFRACTION' ? refined 9.6215 27.8913 33.0124 0.1151 ? 0.0206 ? -0.0256 ? 0.0251 ? 0.0297 ? 0.1175 ? 5.3438 ? 0.0698 ? -3.9016 ? 0.5547 ? 1.1273 ? 7.5050 ? 0.0946 ? 0.0715 ? 0.3301 ? -0.1040 ? -0.0219 ? 0.1516 ? -0.2494 ? -0.0976 ? -0.0727 ? 3 'X-RAY DIFFRACTION' ? refined 11.5024 12.3909 35.9484 0.0065 ? -0.0067 ? -0.0007 ? 0.0438 ? -0.0219 ? 0.0493 ? 2.6349 ? -0.1916 ? -0.9580 ? 0.8813 ? 0.2129 ? 2.7533 ? -0.0341 ? 0.2398 ? -0.0394 ? 0.0118 ? -0.0103 ? -0.0114 ? -0.0408 ? -0.0519 ? 0.0444 ? 4 'X-RAY DIFFRACTION' ? refined 12.8179 14.0108 21.3478 0.0512 ? 0.0279 ? 0.0363 ? 0.2950 ? 0.0762 ? 0.1024 ? 7.8689 ? -1.4069 ? 1.9392 ? 7.8646 ? -1.2296 ? 2.8256 ? 0.0393 ? 0.9875 ? 0.5105 ? -0.4034 ? -0.1034 ? -0.6371 ? 0.2160 ? 0.0172 ? 0.0641 ? 5 'X-RAY DIFFRACTION' ? refined 5.6559 23.5922 24.3739 0.0396 ? 0.0324 ? -0.0045 ? 0.1145 ? 0.0905 ? 0.1491 ? 0.5318 ? -0.2043 ? -0.7607 ? 8.7271 ? 6.2301 ? 5.1999 ? 0.1011 ? 0.2035 ? 0.1743 ? 0.0022 ? 0.1949 ? -0.2099 ? -0.1331 ? -0.0785 ? -0.2960 ? 6 'X-RAY DIFFRACTION' ? refined 2.9183 10.8557 33.9825 0.0068 ? -0.0209 ? 0.0075 ? 0.1089 ? -0.0275 ? 0.0824 ? 6.4170 ? -3.4991 ? 0.9612 ? 3.9405 ? -0.5702 ? 2.4254 ? -0.0326 ? 0.4789 ? -0.2401 ? 0.0007 ? -0.1005 ? 0.1821 ? 0.0049 ? -0.1133 ? 0.1331 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 181 ? ? A 187 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? A 188 ? ? A 192 ? ? 3 'X-RAY DIFFRACTION' 3 ? ? A 193 ? ? A 241 ? ? 4 'X-RAY DIFFRACTION' 4 ? ? A 242 ? ? A 251 ? ? 5 'X-RAY DIFFRACTION' 5 ? ? A 252 ? ? A 257 ? ? 6 'X-RAY DIFFRACTION' 6 ? ? A 258 ? ? A 277 ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? BLU-MAX ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 6 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5HJ1 _pdbx_entry_details.nonpolymer_details ;The ligand was identified based on the electron density maps and was not originally present in protein solution or crystallization conditions. Based on the results described by R. Mejia, et al., 1999 authors concluded that vaccenic acid is likely to bind to a protein. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 410 ? ? 1_555 O A HOH 478 ? ? 6_455 1.85 2 1 OE1 A GLN 228 ? ? 1_555 OE1 A GLN 228 ? ? 7_556 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 272 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 272 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 272 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.43 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.13 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 267 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 35.80 _pdbx_validate_torsion.psi 54.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 178 ? A SER 1 2 1 Y 1 A ASN 179 ? A ASN 2 3 1 Y 1 A ALA 180 ? A ALA 3 4 1 Y 1 A GLY 278 ? A GLY 101 5 1 Y 1 A ASP 279 ? A ASP 102 6 1 Y 1 A GLU 280 ? A GLU 103 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'VACCENIC ACID' VCA 3 water HOH #