HEADER HYDROLASE 12-JAN-16 5HJ1 TITLE CRYSTAL STRUCTURE OF PDZ DOMAIN OF PULLULANASE C PROTEIN OF TYPE II TITLE 2 SECRETION SYSTEM FROM KLEBSIELLA PNEUMONIAE IN COMPLEX WITH FATTY TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULLULANASE C PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 181-280); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE NTUH- SOURCE 3 K2044; SOURCE 4 ORGANISM_TAXID: 484021; SOURCE 5 GENE: YP_002917874; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS GSPC PROTEIN, STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA, AUTHOR 2 S.GRIMSHAW,K.KWON,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 1 17-FEB-16 5HJ1 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA, JRNL AUTH 2 I.DUBROVSKA,S.GRIMSHAW,K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF PDZ DOMAIN OF PULLULANASE C PROTEIN OF JRNL TITL 2 TYPE II SECRETION SYSTEM FROM KLEBSIELLA PNEUMONIAE IN JRNL TITL 3 COMPLEX WITH FATTY ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.181 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 837 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 852 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1129 ; 2.156 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1961 ; 1.029 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 105 ; 4.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;32.904 ;24.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 145 ;11.898 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.795 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 127 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 966 ; 0.024 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 186 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 411 ; 2.206 ; 1.989 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 410 ; 2.196 ; 1.987 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 519 ; 3.376 ; 2.971 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 520 ; 3.373 ; 2.972 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 426 ; 2.799 ; 2.539 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 427 ; 2.797 ; 2.541 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 611 ; 4.375 ; 3.627 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 898 ; 7.421 ; 9.808 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 899 ; 7.418 ; 9.818 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7375 21.3786 29.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.0456 REMARK 3 T33: 0.1349 T12: -0.0029 REMARK 3 T13: 0.0758 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 9.4067 L22: 4.4491 REMARK 3 L33: 1.2533 L12: -4.1647 REMARK 3 L13: -2.1965 L23: -0.3477 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: -0.2225 S13: -0.0074 REMARK 3 S21: -0.1951 S22: -0.0973 S23: -0.0706 REMARK 3 S31: -0.0518 S32: 0.1328 S33: -0.0503 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6215 27.8913 33.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.0251 REMARK 3 T33: 0.1175 T12: 0.0206 REMARK 3 T13: -0.0256 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 5.3438 L22: 0.5547 REMARK 3 L33: 7.5050 L12: 0.0698 REMARK 3 L13: -3.9016 L23: 1.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: 0.0715 S13: 0.3301 REMARK 3 S21: -0.1040 S22: -0.0219 S23: 0.1516 REMARK 3 S31: -0.2494 S32: -0.0976 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5024 12.3909 35.9484 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0438 REMARK 3 T33: 0.0493 T12: -0.0067 REMARK 3 T13: -0.0007 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.6349 L22: 0.8813 REMARK 3 L33: 2.7533 L12: -0.1916 REMARK 3 L13: -0.9580 L23: 0.2129 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.2398 S13: -0.0394 REMARK 3 S21: 0.0118 S22: -0.0103 S23: -0.0114 REMARK 3 S31: -0.0408 S32: -0.0519 S33: 0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8179 14.0108 21.3478 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.2950 REMARK 3 T33: 0.1024 T12: 0.0279 REMARK 3 T13: 0.0363 T23: 0.0762 REMARK 3 L TENSOR REMARK 3 L11: 7.8689 L22: 7.8646 REMARK 3 L33: 2.8256 L12: -1.4069 REMARK 3 L13: 1.9392 L23: -1.2296 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.9875 S13: 0.5105 REMARK 3 S21: -0.4034 S22: -0.1034 S23: -0.6371 REMARK 3 S31: 0.2160 S32: 0.0172 S33: 0.0641 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6559 23.5922 24.3739 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.1145 REMARK 3 T33: 0.1491 T12: 0.0324 REMARK 3 T13: -0.0045 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 0.5318 L22: 8.7271 REMARK 3 L33: 5.1999 L12: -0.2043 REMARK 3 L13: -0.7607 L23: 6.2301 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.2035 S13: 0.1743 REMARK 3 S21: 0.0022 S22: 0.1949 S23: -0.2099 REMARK 3 S31: -0.1331 S32: -0.0785 S33: -0.2960 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9183 10.8557 33.9825 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.1089 REMARK 3 T33: 0.0824 T12: -0.0209 REMARK 3 T13: 0.0075 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.4170 L22: 3.9405 REMARK 3 L33: 2.4254 L12: -3.4991 REMARK 3 L13: 0.9612 L23: -0.5702 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.4789 S13: -0.2401 REMARK 3 S21: 0.0007 S22: -0.1005 S23: 0.1821 REMARK 3 S31: 0.0049 S32: -0.1133 S33: 0.1331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE LIGAND WAS IDENTIFIED BASED ON THE ELECTRON REMARK 3 DENSITY MAPS AND WAS NOT ORIGINALLY PRESENT IN PROTEIN SOLUTION REMARK 3 OR CRYSTALLIZATION CONDITIONS. BASED ON THE RESULTS DESCRIBED BY REMARK 3 R. MEJIA, ET AL., 1999 AUTHORS CONCLUDED THAT VACCENIC ACID IS REMARK 3 LIKELY TO BIND TO A PROTEIN. REMARK 4 REMARK 4 5HJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 27.70 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 87.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M FORMATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.60100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.81800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.81800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.30050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.81800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.81800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.90150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.81800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.81800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.30050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.81800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.81800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.90150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.60100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 178 REMARK 465 ASN A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 278 REMARK 465 ASP A 279 REMARK 465 GLU A 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH A 478 6455 1.85 REMARK 500 OE1 GLN A 228 OE1 GLN A 228 7556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 267 54.43 35.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND WAS IDENTIFIED BASED ON THE ELECTRON DENSITY MAPS AND REMARK 600 WAS NOT ORIGINALLY PRESENT IN PROTEIN SOLUTION OR CRYSTALLIZATION REMARK 600 CONDITIONS. BASED ON THE RESULTS DESCRIBED BY R. MEJIA, ET AL., REMARK 600 1999 AUTHORS CONCLUDED THAT VACCENIC ACID IS LIKELY TO BIND TO A REMARK 600 PROTEIN. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VCA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95107 RELATED DB: TARGETTRACK DBREF1 5HJ1 A 181 280 UNP A0A0M1T516_KLEPN DBREF2 5HJ1 A A0A0M1T516 181 280 SEQADV 5HJ1 SER A 178 UNP A0A0M1T51 EXPRESSION TAG SEQADV 5HJ1 ASN A 179 UNP A0A0M1T51 EXPRESSION TAG SEQADV 5HJ1 ALA A 180 UNP A0A0M1T51 EXPRESSION TAG SEQRES 1 A 103 SER ASN ALA PRO LEU VAL LYS ARG LEU ARG GLU GLN PRO SEQRES 2 A 103 GLN ASN ILE LEU THR TYR LEU SER ILE SER PRO VAL LEU SEQRES 3 A 103 SER GLY ASP LYS LEU LEU GLY TYR ARG LEU ASN PRO GLY SEQRES 4 A 103 LYS ASP ALA SER LEU PHE ARG GLN SER GLY LEU GLN ALA SEQRES 5 A 103 ASN ASP LEU ALA ILE ALA LEU ASN GLY ILE ASP LEU ARG SEQRES 6 A 103 ASP GLN GLU GLN ALA GLN GLN ALA LEU GLN ASN LEU ALA SEQRES 7 A 103 ASP MSE THR GLU ILE THR LEU THR VAL GLU ARG GLU GLY SEQRES 8 A 103 GLN ARG HIS ASP ILE ALA PHE ALA LEU GLY ASP GLU MODRES 5HJ1 MSE A 257 MET MODIFIED RESIDUE HET MSE A 257 8 HET VCA A 301 31 HETNAM MSE SELENOMETHIONINE HETNAM VCA VACCENIC ACID HETSYN VCA (11E)-OCTADEC-11-ENOIC ACID FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 VCA C18 H34 O2 FORMUL 3 HOH *78(H2 O) HELIX 1 AA1 PRO A 181 ARG A 187 1 7 HELIX 2 AA2 ASN A 192 TYR A 196 1 5 HELIX 3 AA3 ASP A 243 ALA A 255 1 13 SHEET 1 AA1 4 LEU A 197 SER A 204 0 SHEET 2 AA1 4 LYS A 207 PRO A 215 -1 O LEU A 209 N VAL A 202 SHEET 3 AA1 4 ASP A 231 LEU A 236 -1 O ALA A 233 N TYR A 211 SHEET 4 AA1 4 ILE A 239 ASP A 240 -1 O ILE A 239 N LEU A 236 SHEET 1 AA2 5 LEU A 197 SER A 204 0 SHEET 2 AA2 5 LYS A 207 PRO A 215 -1 O LEU A 209 N VAL A 202 SHEET 3 AA2 5 ASP A 231 LEU A 236 -1 O ALA A 233 N TYR A 211 SHEET 4 AA2 5 GLU A 259 ARG A 266 -1 O GLU A 265 N LEU A 232 SHEET 5 AA2 5 GLN A 269 ALA A 276 -1 O ILE A 273 N LEU A 262 LINK C ASP A 256 N MSE A 257 1555 1555 1.34 LINK C MSE A 257 N THR A 258 1555 1555 1.33 SITE 1 AC1 5 TYR A 196 GLY A 205 PHE A 275 ALA A 276 SITE 2 AC1 5 LEU A 277 CRYST1 47.636 47.636 93.202 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010729 0.00000