HEADER HYDROLASE 13-JAN-16 5HJA TITLE CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH TITLE 2 INHIBITOR ABHDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: ARG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HAI,D.W.CHRISTIANSON REVDAT 5 27-SEP-23 5HJA 1 LINK REVDAT 4 25-DEC-19 5HJA 1 REMARK REVDAT 3 18-APR-18 5HJA 1 JRNL REVDAT 2 13-SEP-17 5HJA 1 REMARK REVDAT 1 13-APR-16 5HJA 0 JRNL AUTH Y.HAI,D.W.CHRISTIANSON JRNL TITL CRYSTAL STRUCTURES OF LEISHMANIA MEXICANA ARGINASE COMPLEXED JRNL TITL 2 WITH ALPHA , ALPHA-DISUBSTITUTED BORONIC AMINO-ACID JRNL TITL 3 INHIBITORS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 300 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27050264 JRNL DOI 10.1107/S2053230X16003630 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2355 - 3.9721 0.94 2726 160 0.1449 0.1716 REMARK 3 2 3.9721 - 3.1557 0.95 2723 155 0.1524 0.1860 REMARK 3 3 3.1557 - 2.7576 0.95 2736 151 0.1884 0.2271 REMARK 3 4 2.7576 - 2.5058 0.94 2738 162 0.1945 0.2082 REMARK 3 5 2.5058 - 2.3264 0.95 2724 136 0.2033 0.2385 REMARK 3 6 2.3264 - 2.1894 0.95 2741 135 0.2084 0.2149 REMARK 3 7 2.1894 - 2.0798 0.94 2728 165 0.2168 0.2477 REMARK 3 8 2.0798 - 1.9894 0.95 2718 139 0.2315 0.2466 REMARK 3 9 1.9894 - 1.9128 0.95 2771 138 0.2380 0.2655 REMARK 3 10 1.9128 - 1.8469 0.95 2747 136 0.2374 0.2468 REMARK 3 11 1.8469 - 1.7891 0.95 2712 135 0.2536 0.2876 REMARK 3 12 1.7891 - 1.7380 0.95 2749 140 0.2695 0.3431 REMARK 3 13 1.7380 - 1.6923 0.95 2762 127 0.2904 0.2917 REMARK 3 14 1.6923 - 1.6510 0.90 2620 137 0.3090 0.3081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2404 REMARK 3 ANGLE : 0.806 3262 REMARK 3 CHIRALITY : 0.028 373 REMARK 3 PLANARITY : 0.003 419 REMARK 3 DIHEDRAL : 14.693 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5007 -23.3050 29.4439 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.1666 REMARK 3 T33: 0.1739 T12: -0.0168 REMARK 3 T13: -0.0198 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 0.0880 L22: 0.0953 REMARK 3 L33: 0.1047 L12: 0.0490 REMARK 3 L13: 0.0249 L23: 0.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: 0.1547 S13: -0.5329 REMARK 3 S21: -0.1870 S22: 0.0992 S23: -0.0280 REMARK 3 S31: -0.0518 S32: 0.0440 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4559 -10.2603 21.3672 REMARK 3 T TENSOR REMARK 3 T11: -0.1224 T22: 0.3836 REMARK 3 T33: -0.4037 T12: -0.1009 REMARK 3 T13: -0.8360 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: -0.0121 L22: -0.0178 REMARK 3 L33: -0.0046 L12: -0.0342 REMARK 3 L13: 0.0171 L23: 0.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.3412 S12: 0.1931 S13: 0.0865 REMARK 3 S21: -0.2863 S22: -0.0842 S23: 0.0451 REMARK 3 S31: 0.1147 S32: -0.1510 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4336 -21.4217 34.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.1521 REMARK 3 T33: 0.2939 T12: -0.0491 REMARK 3 T13: -0.0410 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: -0.0071 L22: 0.0008 REMARK 3 L33: -0.0183 L12: 0.0029 REMARK 3 L13: 0.0107 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.2646 S12: -0.0385 S13: -0.2481 REMARK 3 S21: -0.0959 S22: -0.0566 S23: 0.2001 REMARK 3 S31: 0.1283 S32: -0.0495 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3801 -8.2175 42.5403 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1290 REMARK 3 T33: 0.1199 T12: -0.0055 REMARK 3 T13: -0.0218 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.2555 L22: 0.4306 REMARK 3 L33: 0.0545 L12: -0.0763 REMARK 3 L13: 0.1475 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.0864 S13: 0.0484 REMARK 3 S21: -0.0859 S22: -0.0009 S23: 0.1747 REMARK 3 S31: 0.0042 S32: -0.0062 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5667 -2.8265 30.4288 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.2370 REMARK 3 T33: 0.1399 T12: -0.0304 REMARK 3 T13: 0.0479 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: -0.0059 L22: -0.0074 REMARK 3 L33: 0.0001 L12: -0.0005 REMARK 3 L13: 0.0051 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.1898 S13: 0.1026 REMARK 3 S21: -0.0832 S22: -0.0307 S23: 0.0017 REMARK 3 S31: -0.1033 S32: -0.1327 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0405 -13.8587 38.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.1411 REMARK 3 T33: 0.1201 T12: -0.0192 REMARK 3 T13: -0.0015 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: -0.0046 L22: 0.0721 REMARK 3 L33: 0.0092 L12: 0.0620 REMARK 3 L13: 0.0051 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.0008 S13: -0.1838 REMARK 3 S21: -0.1371 S22: 0.0481 S23: -0.2924 REMARK 3 S31: 0.0256 S32: -0.0539 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1206 -18.9950 36.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.1317 REMARK 3 T33: 0.2458 T12: -0.0165 REMARK 3 T13: 0.0392 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: -0.0096 L22: -0.0063 REMARK 3 L33: -0.0052 L12: -0.0081 REMARK 3 L13: 0.0308 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: -0.1373 S13: -0.1614 REMARK 3 S21: -0.1014 S22: -0.0845 S23: -0.1758 REMARK 3 S31: -0.0366 S32: -0.0571 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ITY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.2, 22% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.46700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.67303 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.95567 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.46700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.67303 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.95567 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.46700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.67303 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.95567 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.34607 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.91133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.34607 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.91133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.34607 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.91133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 294 REMARK 465 ALA A 295 REMARK 465 THR A 296 REMARK 465 GLU A 297 REMARK 465 SER A 298 REMARK 465 HIS A 299 REMARK 465 VAL A 300 REMARK 465 PRO A 323 REMARK 465 HIS A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 LYS A 328 REMARK 465 LEU A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 191 1.22 -160.13 REMARK 500 LEU A 292 31.75 -88.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 ND1 REMARK 620 2 ASP A 137 OD2 92.0 REMARK 620 3 ASP A 141 OD2 86.6 82.6 REMARK 620 4 ASP A 243 OD2 100.1 89.4 169.8 REMARK 620 5 XA2 A 403 O01 106.0 161.7 101.3 84.3 REMARK 620 6 XA2 A 403 O03 179.7 87.7 93.4 79.9 74.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 OD1 REMARK 620 2 HIS A 139 ND1 100.1 REMARK 620 3 ASP A 243 OD2 90.3 168.2 REMARK 620 4 ASP A 245 OD1 78.6 103.7 83.7 REMARK 620 5 ASP A 245 OD2 130.3 93.9 83.5 51.7 REMARK 620 6 XA2 A 403 O03 90.0 92.4 81.9 161.7 137.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XA2 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HJ9 RELATED DB: PDB DBREF 5HJA A 13 329 UNP Q6TUJ5 Q6TUJ5_LEIME 13 329 SEQADV 5HJA MET A 0 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA ARG A 1 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA GLY A 2 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA SER A 3 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 4 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 5 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 6 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 7 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 8 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA HIS A 9 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA GLY A 10 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA MET A 11 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJA ALA A 12 UNP Q6TUJ5 EXPRESSION TAG SEQRES 1 A 330 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 330 LYS LYS MET SER ILE VAL LEU ALA PRO PHE SER GLY GLY SEQRES 3 A 330 GLN PRO HIS SER GLY VAL GLU LEU GLY PRO ASP TYR LEU SEQRES 4 A 330 LEU LYS GLN GLY LEU GLN GLN ASP MET GLU LYS LEU GLY SEQRES 5 A 330 TRP ASP THR ARG LEU GLU ARG VAL PHE ASP GLY LYS VAL SEQRES 6 A 330 VAL GLU ALA ARG LYS ALA SER ASP ASN GLY ASP ARG ILE SEQRES 7 A 330 GLY ARG VAL LYS ARG PRO ARG LEU THR ALA GLU CYS THR SEQRES 8 A 330 GLU LYS ILE TYR LYS CYS VAL ARG ARG VAL ALA GLU GLN SEQRES 9 A 330 GLY ARG PHE PRO LEU THR ILE GLY GLY ASP HIS SER ILE SEQRES 10 A 330 ALA LEU GLY THR VAL ALA GLY VAL LEU SER VAL HIS PRO SEQRES 11 A 330 ASP ALA GLY VAL ILE TRP VAL ASP ALA HIS ALA ASP ILE SEQRES 12 A 330 ASN THR MET SER GLY THR VAL SER GLY ASN LEU HIS GLY SEQRES 13 A 330 CYS PRO LEU SER ILE LEU LEU GLY LEU ASP ARG GLU ASN SEQRES 14 A 330 ILE PRO GLU CYS PHE SER TRP VAL PRO GLN VAL LEU LYS SEQRES 15 A 330 PRO ASN LYS ILE ALA TYR ILE GLY LEU ARG ALA VAL ASP SEQRES 16 A 330 ASP GLU GLU LYS LYS ILE LEU HIS ASP LEU ASN ILE ALA SEQRES 17 A 330 ALA PHE SER MET HIS HIS VAL ASP ARG TYR GLY ILE ASP SEQRES 18 A 330 LYS VAL VAL SER MET ALA ILE GLU ALA VAL SER PRO LYS SEQRES 19 A 330 GLY THR GLU PRO VAL MET VAL SER TYR ASP VAL ASP THR SEQRES 20 A 330 ILE ASP PRO LEU TYR VAL PRO ALA THR GLY THR PRO VAL SEQRES 21 A 330 ARG GLY GLY LEU SER PHE ARG GLU ALA LEU PHE LEU CYS SEQRES 22 A 330 GLU ARG ILE ALA GLU CYS GLY ARG LEU VAL ALA LEU ASP SEQRES 23 A 330 VAL VAL GLU CYS ASN PRO LEU LEU ALA ALA THR GLU SER SEQRES 24 A 330 HIS VAL ASN ASP THR ILE SER VAL GLY CYS ALA ILE ALA SEQRES 25 A 330 ARG CYS MET MET GLY GLU THR LEU LEU TYR THR PRO HIS SEQRES 26 A 330 THR SER SER LYS LEU HET MN A 401 1 HET MN A 402 1 HET XA2 A 403 28 HET GOL A 404 6 HETNAM MN MANGANESE (II) ION HETNAM XA2 (R)-2-AMINO-6-BORONO-2-(1-(3,4-DICHLOROBENZYL) HETNAM 2 XA2 PIPERIDIN-4-YL)HEXANOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN 2(MN 2+) FORMUL 4 XA2 C18 H28 B CL2 N2 O5 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *146(H2 O) HELIX 1 AA1 GLY A 30 GLU A 32 5 3 HELIX 2 AA2 LEU A 33 GLN A 41 1 9 HELIX 3 AA3 GLY A 42 LEU A 50 1 9 HELIX 4 AA4 ASP A 61 ASP A 72 1 12 HELIX 5 AA5 ARG A 82 GLN A 103 1 22 HELIX 6 AA6 ASP A 113 SER A 115 5 3 HELIX 7 AA7 ILE A 116 HIS A 128 1 13 HELIX 8 AA8 ASN A 152 GLY A 155 5 4 HELIX 9 AA9 CYS A 156 GLY A 163 1 8 HELIX 10 AB1 ASP A 165 ILE A 169 5 5 HELIX 11 AB2 PRO A 170 SER A 174 5 5 HELIX 12 AB3 LYS A 181 ASN A 183 5 3 HELIX 13 AB4 ASP A 194 LEU A 204 1 11 HELIX 14 AB5 MET A 211 GLY A 218 1 8 HELIX 15 AB6 GLY A 218 SER A 231 1 14 HELIX 16 AB7 ASP A 245 ILE A 247 5 3 HELIX 17 AB8 SER A 264 GLY A 279 1 16 HELIX 18 AB9 ASP A 302 MET A 315 1 14 SHEET 1 AA1 8 ASP A 53 ARG A 58 0 SHEET 2 AA1 8 LYS A 14 LEU A 19 1 N MET A 15 O ASP A 53 SHEET 3 AA1 8 PHE A 106 ILE A 110 1 O PHE A 106 N LYS A 14 SHEET 4 AA1 8 LEU A 281 VAL A 287 1 O LEU A 284 N THR A 109 SHEET 5 AA1 8 VAL A 238 ASP A 243 1 N VAL A 238 O VAL A 282 SHEET 6 AA1 8 GLY A 132 VAL A 136 1 N ILE A 134 O MET A 239 SHEET 7 AA1 8 ILE A 185 LEU A 190 1 O ALA A 186 N TRP A 135 SHEET 8 AA1 8 ALA A 207 SER A 210 1 O ALA A 207 N TYR A 187 SHEET 1 AA2 2 ARG A 76 ILE A 77 0 SHEET 2 AA2 2 VAL A 80 LYS A 81 -1 O VAL A 80 N ILE A 77 LINK ND1 HIS A 114 MN MN A 401 1555 1555 2.27 LINK OD2 ASP A 137 MN MN A 401 1555 1555 2.00 LINK OD1 ASP A 137 MN MN A 402 1555 1555 2.11 LINK ND1 HIS A 139 MN MN A 402 1555 1555 2.29 LINK OD2 ASP A 141 MN MN A 401 1555 1555 2.21 LINK OD2 ASP A 243 MN MN A 401 1555 1555 2.28 LINK OD2 ASP A 243 MN MN A 402 1555 1555 2.50 LINK OD1 ASP A 245 MN MN A 402 1555 1555 2.72 LINK OD2 ASP A 245 MN MN A 402 1555 1555 2.16 LINK MN MN A 401 O01 XA2 A 403 1555 1555 2.18 LINK MN MN A 401 O03 XA2 A 403 1555 1555 2.23 LINK MN MN A 402 O03 XA2 A 403 1555 1555 1.85 CISPEP 1 GLY A 111 GLY A 112 0 2.84 CISPEP 2 ARG A 260 GLY A 261 0 -6.65 SITE 1 AC1 6 HIS A 114 ASP A 137 ASP A 141 ASP A 243 SITE 2 AC1 6 MN A 402 XA2 A 403 SITE 1 AC2 6 ASP A 137 HIS A 139 ASP A 243 ASP A 245 SITE 2 AC2 6 MN A 401 XA2 A 403 SITE 1 AC3 22 HIS A 114 ASP A 137 HIS A 139 ASP A 141 SITE 2 AC3 22 ASN A 143 SER A 150 HIS A 154 GLY A 155 SITE 3 AC3 22 ARG A 191 VAL A 193 ASP A 194 ASP A 243 SITE 4 AC3 22 ASP A 245 THR A 257 GLU A 288 MN A 401 SITE 5 AC3 22 MN A 402 HOH A 515 HOH A 523 HOH A 526 SITE 6 AC3 22 HOH A 531 HOH A 566 SITE 1 AC4 6 MET A 211 HIS A 212 ASP A 215 PHE A 270 SITE 2 AC4 6 GLU A 273 HOH A 532 CRYST1 88.934 88.934 113.867 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011244 0.006492 0.000000 0.00000 SCALE2 0.000000 0.012984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008782 0.00000