HEADER METAL BINDING PROTEIN 13-JAN-16 5HJH TITLE DPS4 FROM NOSTOC PUNCTIFORME IN COMPLEX WITH FE IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRITIN, DPS FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DNA BINDING PROTEIN FROM STARVED CELLS.; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 272131; SOURCE 4 STRAIN: 102; SOURCE 5 GENE: NPUN_R5799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS METAL BINDING, FERREDOXIN, OXIDATIVE STRESS, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO REVDAT 3 10-JAN-24 5HJH 1 LINK REVDAT 2 13-SEP-17 5HJH 1 REMARK REVDAT 1 25-JAN-17 5HJH 0 JRNL AUTH C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO JRNL TITL DPS4 FROM NOSTOC PUNCTIFORME IN COMPLEX WITH FE IONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 66993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.5299 0.99 4689 143 0.1443 0.1744 REMARK 3 2 4.5299 - 3.5959 1.00 4680 150 0.1269 0.1570 REMARK 3 3 3.5959 - 3.1415 1.00 4672 143 0.1525 0.1581 REMARK 3 4 3.1415 - 2.8543 1.00 4642 145 0.1579 0.2048 REMARK 3 5 2.8543 - 2.6497 1.00 4662 146 0.1574 0.1862 REMARK 3 6 2.6497 - 2.4935 1.00 4651 139 0.1613 0.2207 REMARK 3 7 2.4935 - 2.3686 1.00 4667 144 0.1588 0.2157 REMARK 3 8 2.3686 - 2.2655 1.00 4614 143 0.1628 0.2301 REMARK 3 9 2.2655 - 2.1783 1.00 4609 143 0.1745 0.2341 REMARK 3 10 2.1783 - 2.1031 0.99 4639 142 0.1856 0.2308 REMARK 3 11 2.1031 - 2.0374 0.99 4617 142 0.2005 0.2404 REMARK 3 12 2.0374 - 1.9791 0.99 4628 144 0.2181 0.2919 REMARK 3 13 1.9791 - 1.9270 0.99 4591 140 0.2618 0.2684 REMARK 3 14 1.9270 - 1.8800 0.99 4628 140 0.2839 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5796 REMARK 3 ANGLE : 0.955 7844 REMARK 3 CHIRALITY : 0.038 861 REMARK 3 PLANARITY : 0.005 1030 REMARK 3 DIHEDRAL : 14.837 2087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7728 -29.4344 -12.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.4578 T22: 0.2390 REMARK 3 T33: 0.3854 T12: 0.0344 REMARK 3 T13: -0.0736 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.9007 L22: 0.7096 REMARK 3 L33: 1.5589 L12: 0.1949 REMARK 3 L13: 0.4793 L23: 0.2312 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.0846 S13: 0.2325 REMARK 3 S21: -0.0204 S22: -0.0445 S23: 0.0199 REMARK 3 S31: -0.4443 S32: -0.0071 S33: 0.0748 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4272 -40.3922 -20.9169 REMARK 3 T TENSOR REMARK 3 T11: 0.3224 T22: 0.3248 REMARK 3 T33: 0.3115 T12: -0.0671 REMARK 3 T13: 0.0137 T23: 0.0891 REMARK 3 L TENSOR REMARK 3 L11: 1.4597 L22: 1.0359 REMARK 3 L33: 1.7984 L12: 0.4573 REMARK 3 L13: 0.6876 L23: 0.4524 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.1261 S13: 0.2273 REMARK 3 S21: -0.1454 S22: -0.0786 S23: -0.1140 REMARK 3 S31: -0.2530 S32: 0.2499 S33: 0.1127 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 6:182) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5100 -40.3526 8.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.4256 REMARK 3 T33: 0.3999 T12: 0.1428 REMARK 3 T13: -0.0073 T23: -0.0949 REMARK 3 L TENSOR REMARK 3 L11: 0.8348 L22: 1.4725 REMARK 3 L33: 1.4400 L12: 0.3330 REMARK 3 L13: -0.2580 L23: -0.6440 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0387 S13: 0.1285 REMARK 3 S21: 0.0928 S22: -0.0400 S23: 0.1451 REMARK 3 S31: -0.3110 S32: -0.4305 S33: 0.0880 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 5:182) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3012 -41.8224 25.1911 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.3604 REMARK 3 T33: 0.3027 T12: 0.0560 REMARK 3 T13: -0.0113 T23: -0.1048 REMARK 3 L TENSOR REMARK 3 L11: 0.9378 L22: 1.4459 REMARK 3 L33: 1.1786 L12: 0.5456 REMARK 3 L13: -0.1885 L23: -0.3282 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.1901 S13: 0.1274 REMARK 3 S21: 0.2585 S22: -0.0032 S23: 0.0604 REMARK 3 S31: -0.2555 S32: -0.1050 S33: 0.0544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 48.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.99300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% SOKALAN HP 66, 0.1 M HEPES PH 7.0 REMARK 280 AND 0.2 M NAOAC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.82500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.82500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 71180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -618.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.15500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -86.87101 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.15500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -86.87101 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 376 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 310 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 5 REMARK 465 GLN B 5 REMARK 465 GLN C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 408 O HOH B 414 2.08 REMARK 500 O HOH B 342 O HOH B 402 2.14 REMARK 500 OE2 GLU B 119 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 140 NH2 ARG D 145 3545 2.13 REMARK 500 O HOH A 301 O HOH B 401 2445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 15 -167.18 -120.60 REMARK 500 ALA A 93 -6.97 -145.65 REMARK 500 PHE A 178 11.61 -148.94 REMARK 500 ALA B 93 -5.27 -146.93 REMARK 500 PHE B 178 11.16 -153.79 REMARK 500 TYR C 15 -164.65 -111.50 REMARK 500 ALA C 93 -6.90 -149.35 REMARK 500 PHE C 178 10.45 -151.26 REMARK 500 ALA D 93 -3.83 -151.08 REMARK 500 PHE D 178 13.08 -147.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 415 DISTANCE = 7.53 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 51 NE2 REMARK 620 2 HOH A 349 O 114.8 REMARK 620 3 HIS B 78 NE2 94.5 149.4 REMARK 620 4 GLU B 82 OE2 103.2 100.7 79.5 REMARK 620 5 HOH B 399 O 103.8 56.0 110.6 150.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 204 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 HOH A 317 O 66.6 REMARK 620 3 HOH A 349 O 70.3 64.1 REMARK 620 4 GLU B 82 OE1 114.6 175.3 111.6 REMARK 620 5 HIS C 164 NE2 56.5 47.9 19.6 128.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 GLU A 82 OE1 102.1 REMARK 620 3 HOH A 387 O 96.2 158.2 REMARK 620 4 HIS B 51 NE2 74.3 99.3 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 NE2 REMARK 620 2 HOH B 386 O 84.7 REMARK 620 3 HOH B 388 O 88.3 62.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 204 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 51 NE2 REMARK 620 2 HIS D 78 NE2 76.8 REMARK 620 3 GLU D 82 OE2 84.3 115.6 REMARK 620 4 HOH D 371 O 96.9 85.4 158.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 NE2 REMARK 620 2 HOH C 368 O 90.7 REMARK 620 3 GLU D 82 OE2 78.9 112.1 REMARK 620 4 HOH D 369 O 88.9 67.6 167.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 78 NE2 REMARK 620 2 GLU C 82 OE1 81.9 REMARK 620 3 HIS D 51 NE2 91.4 103.7 REMARK 620 4 HOH D 389 O 121.5 132.3 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 82 OE2 REMARK 620 2 HOH C 321 O 62.3 REMARK 620 3 HIS D 63 NE2 81.4 143.7 REMARK 620 4 HOH D 389 O 125.1 94.4 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HJF RELATED DB: PDB REMARK 900 5HJF IS THE APO FORM OF THE PROTEIN DBREF 5HJH A 5 182 UNP B2J981 B2J981_NOSP7 5 182 DBREF 5HJH B 5 182 UNP B2J981 B2J981_NOSP7 5 182 DBREF 5HJH C 5 182 UNP B2J981 B2J981_NOSP7 5 182 DBREF 5HJH D 5 182 UNP B2J981 B2J981_NOSP7 5 182 SEQRES 1 A 178 GLN THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN SEQRES 2 A 178 PRO VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR SEQRES 3 A 178 GLU GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU SEQRES 4 A 178 TYR LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SEQRES 5 A 178 SER GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER SEQRES 6 A 178 TYR ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU SEQRES 7 A 178 ARG LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SEQRES 8 A 178 SER LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER SEQRES 9 A 178 GLU GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP SEQRES 10 A 178 LEU ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG SEQRES 11 A 178 GLN ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR SEQRES 12 A 178 ARG TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU SEQRES 13 A 178 ARG ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER SEQRES 14 A 178 LEU THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 B 178 GLN THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN SEQRES 2 B 178 PRO VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR SEQRES 3 B 178 GLU GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU SEQRES 4 B 178 TYR LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SEQRES 5 B 178 SER GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER SEQRES 6 B 178 TYR ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU SEQRES 7 B 178 ARG LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SEQRES 8 B 178 SER LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER SEQRES 9 B 178 GLU GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP SEQRES 10 B 178 LEU ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG SEQRES 11 B 178 GLN ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR SEQRES 12 B 178 ARG TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU SEQRES 13 B 178 ARG ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER SEQRES 14 B 178 LEU THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 C 178 GLN THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN SEQRES 2 C 178 PRO VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR SEQRES 3 C 178 GLU GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU SEQRES 4 C 178 TYR LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SEQRES 5 C 178 SER GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER SEQRES 6 C 178 TYR ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU SEQRES 7 C 178 ARG LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SEQRES 8 C 178 SER LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER SEQRES 9 C 178 GLU GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP SEQRES 10 C 178 LEU ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG SEQRES 11 C 178 GLN ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR SEQRES 12 C 178 ARG TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU SEQRES 13 C 178 ARG ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER SEQRES 14 C 178 LEU THR LEU GLY PHE VAL GLN ALA ALA SEQRES 1 D 178 GLN THR LEU LEU ARG ASN PHE GLY ASN VAL TYR ASP ASN SEQRES 2 D 178 PRO VAL LEU LEU ASP ARG SER VAL THR ALA PRO VAL THR SEQRES 3 D 178 GLU GLY PHE ASN VAL VAL LEU ALA SER PHE GLN ALA LEU SEQRES 4 D 178 TYR LEU GLN TYR GLN LYS HIS HIS PHE VAL VAL GLU GLY SEQRES 5 D 178 SER GLU PHE TYR SER LEU HIS GLU PHE PHE ASN GLU SER SEQRES 6 D 178 TYR ASN GLN VAL GLN ASP HIS ILE HIS GLU ILE GLY GLU SEQRES 7 D 178 ARG LEU ASP GLY LEU GLY GLY VAL PRO VAL ALA THR PHE SEQRES 8 D 178 SER LYS LEU ALA GLU LEU THR CYS PHE GLU GLN GLU SER SEQRES 9 D 178 GLU GLY VAL TYR SER SER ARG GLN MET VAL GLU ASN ASP SEQRES 10 D 178 LEU ALA ALA GLU GLN ALA ILE ILE GLY VAL ILE ARG ARG SEQRES 11 D 178 GLN ALA ALA GLN ALA GLU SER LEU GLY ASP ARG GLY THR SEQRES 12 D 178 ARG TYR LEU TYR GLU LYS ILE LEU LEU LYS THR GLU GLU SEQRES 13 D 178 ARG ALA TYR HIS LEU SER HIS PHE LEU ALA LYS ASP SER SEQRES 14 D 178 LEU THR LEU GLY PHE VAL GLN ALA ALA HET FE A 201 1 HET EPE A 202 15 HET FE A 203 1 HET FE A 204 1 HET FE B 201 1 HET FE C 201 1 HET FE C 202 1 HET FE C 203 1 HET FE C 204 1 HETNAM FE FE (III) ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 FE 8(FE 3+) FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 14 HOH *375(H2 O) HELIX 1 AA1 ASP A 22 VAL A 54 1 33 HELIX 2 AA2 GLU A 58 LEU A 87 1 30 HELIX 3 AA3 THR A 94 THR A 102 1 9 HELIX 4 AA4 SER A 113 GLY A 143 1 31 HELIX 5 AA5 ASP A 144 ALA A 170 1 27 HELIX 6 AA6 SER A 173 PHE A 178 5 6 HELIX 7 AA7 ASP B 22 VAL B 54 1 33 HELIX 8 AA8 GLU B 58 LEU B 87 1 30 HELIX 9 AA9 THR B 94 THR B 102 1 9 HELIX 10 AB1 SER B 113 GLY B 143 1 31 HELIX 11 AB2 ASP B 144 ALA B 170 1 27 HELIX 12 AB3 SER B 173 PHE B 178 5 6 HELIX 13 AB4 ASP C 22 VAL C 54 1 33 HELIX 14 AB5 GLU C 58 LEU C 87 1 30 HELIX 15 AB6 THR C 94 THR C 102 1 9 HELIX 16 AB7 SER C 113 GLY C 143 1 31 HELIX 17 AB8 ASP C 144 ALA C 170 1 27 HELIX 18 AB9 SER C 173 PHE C 178 5 6 HELIX 19 AC1 ASP D 22 VAL D 54 1 33 HELIX 20 AC2 GLU D 58 LEU D 87 1 30 HELIX 21 AC3 THR D 94 THR D 102 1 9 HELIX 22 AC4 SER D 113 GLY D 143 1 31 HELIX 23 AC5 ASP D 144 ALA D 170 1 27 HELIX 24 AC6 SER D 173 PHE D 178 5 6 SHEET 1 AA1 2 LEU A 7 ARG A 9 0 SHEET 2 AA1 2 VAL B 111 TYR B 112 -1 O VAL B 111 N LEU A 8 SHEET 1 AA2 2 VAL A 111 TYR A 112 0 SHEET 2 AA2 2 LEU B 7 ARG B 9 -1 O LEU B 8 N VAL A 111 SHEET 1 AA3 2 LEU C 7 ARG C 9 0 SHEET 2 AA3 2 VAL D 111 TYR D 112 -1 O VAL D 111 N LEU C 8 SHEET 1 AA4 2 VAL C 111 TYR C 112 0 SHEET 2 AA4 2 LEU D 7 ARG D 9 -1 O LEU D 8 N VAL C 111 LINK NE2 HIS A 51 FE FE A 203 1555 1555 2.32 LINK NE2 HIS A 63 FE FE A 204 1555 1555 2.65 LINK NE2 HIS A 78 FE FE A 201 1555 1555 2.29 LINK OE1 GLU A 82 FE FE A 201 1555 1555 1.84 LINK FE FE A 201 O HOH A 387 1555 1555 2.33 LINK FE FE A 201 NE2 HIS B 51 1555 1555 2.44 LINK FE FE A 203 O HOH A 349 1555 1555 2.32 LINK FE FE A 203 NE2 HIS B 78 1555 1555 2.02 LINK FE FE A 203 OE2 GLU B 82 1555 1555 1.94 LINK FE FE A 203 O HOH B 399 1555 1555 2.46 LINK FE FE A 204 O HOH A 317 1555 1555 2.10 LINK FE FE A 204 O HOH A 349 1555 1555 2.21 LINK FE FE A 204 OE1 GLU B 82 1555 1555 2.64 LINK FE FE A 204 NE2 HIS C 164 2445 1555 2.42 LINK NE2 HIS B 63 FE FE B 201 1555 1555 2.36 LINK FE FE B 201 O HOH B 386 1555 1555 2.40 LINK FE FE B 201 O HOH B 388 1555 1555 2.27 LINK NE2 HIS C 51 FE FE C 204 1555 1555 2.47 LINK NE2 HIS C 63 FE FE C 202 1555 1555 2.33 LINK NE2 HIS C 78 FE FE C 201 1555 1555 2.01 LINK OE1 GLU C 82 FE FE C 201 1555 1555 2.40 LINK OE2 GLU C 82 FE FE C 203 1555 1555 2.47 LINK FE FE C 201 NE2 HIS D 51 1555 1555 2.37 LINK FE FE C 201 O HOH D 389 1555 1555 2.74 LINK FE FE C 202 O HOH C 368 1555 1555 2.18 LINK FE FE C 202 OE2 GLU D 82 1555 1555 2.79 LINK FE FE C 202 O HOH D 369 1555 2445 2.36 LINK FE FE C 203 O HOH C 321 1555 1555 2.63 LINK FE FE C 203 NE2 HIS D 63 1555 1555 2.38 LINK FE FE C 203 O HOH D 389 1555 1555 2.67 LINK FE FE C 204 NE2 HIS D 78 1555 1555 2.21 LINK FE FE C 204 OE2 GLU D 82 1555 1555 2.60 LINK FE FE C 204 O HOH D 371 1555 1555 2.22 SITE 1 AC1 6 HIS A 78 GLU A 82 HOH A 387 HIS B 51 SITE 2 AC1 6 FE B 201 HOH B 386 SITE 1 AC2 10 ASP A 16 ASN A 17 LEU A 20 LEU A 21 SITE 2 AC2 10 ASP A 22 ARG A 23 HOH A 301 GLY D 12 SITE 3 AC2 10 ASN D 13 GLU D 31 SITE 1 AC3 6 HIS A 51 FE A 204 HOH A 349 HIS B 78 SITE 2 AC3 6 GLU B 82 HOH B 399 SITE 1 AC4 7 HIS A 63 FE A 203 HOH A 317 HOH A 349 SITE 2 AC4 7 GLU B 82 HOH B 315 HIS C 164 SITE 1 AC5 7 GLU A 82 FE A 201 HOH A 346 HIS B 63 SITE 2 AC5 7 HIS B 164 HOH B 386 HOH B 388 SITE 1 AC6 5 HIS C 78 GLU C 82 FE C 203 HIS D 51 SITE 2 AC6 5 HOH D 389 SITE 1 AC7 6 HIS C 63 FE C 204 HOH C 368 GLU D 82 SITE 2 AC7 6 HIS D 164 HOH D 369 SITE 1 AC8 7 HIS A 164 GLU C 82 FE C 201 HOH C 321 SITE 2 AC8 7 HIS D 63 HOH D 387 HOH D 389 SITE 1 AC9 7 HIS C 51 HIS C 63 FE C 202 HOH C 368 SITE 2 AC9 7 HIS D 78 GLU D 82 HOH D 371 CRYST1 100.310 100.310 145.650 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009969 0.005756 0.000000 0.00000 SCALE2 0.000000 0.011511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006866 0.00000