HEADER SIGNALING PROTEIN 13-JAN-16 5HJP TITLE IDENTIFICATION OF LXRBETA SELECTIVE AGONISTS FOR THE TREATMENT OF TITLE 2 ALZHEIMER'S DISEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-BETA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 2,RETINOID X COMPND 5 RECEPTOR BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OXYSTEROLS RECEPTOR LXR-BETA; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: LIVER X RECEPTOR BETA,NUCLEAR RECEPTOR NER,NUCLEAR RECEPTOR COMPND 11 SUBFAMILY 1 GROUP H MEMBER 2,UBIQUITOUSLY-EXPRESSED NUCLEAR RECEPTOR; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRB, NR2B2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NR1H2, LXRB, NER, UNR; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AGONIST, ALZHEIMER'S, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.PARTHASARATHY,D.KLEIN REVDAT 4 06-MAR-24 5HJP 1 JRNL REMARK REVDAT 3 27-APR-16 5HJP 1 JRNL REVDAT 2 20-APR-16 5HJP 1 JRNL REVDAT 1 06-APR-16 5HJP 0 JRNL AUTH S.J.STACHEL,C.ZERBINATTI,M.T.RUDD,M.COSDEN,S.SUON,K.K.NANDA, JRNL AUTH 2 K.WESSNER,J.DIMUZIO,J.MAXWELL,Z.WU,J.M.USLANER,M.S.MICHENER, JRNL AUTH 3 P.SZCZERBA,E.BRNARDIC,V.RADA,Y.KIM,R.MEISSNER,P.WUELFING, JRNL AUTH 4 Y.YUAN,J.BALLARD,M.HOLAHAN,D.J.KLEIN,J.LU,X.FRADERA, JRNL AUTH 5 G.PARTHASARATHY,V.N.UEBELE,Z.CHEN,Y.LI,J.LI,A.J.COOKE, JRNL AUTH 6 D.J.BENNETT,M.T.BILODEAU,J.RENGER JRNL TITL IDENTIFICATION AND IN VIVO EVALUATION OF LIVER X RECEPTOR JRNL TITL 2 BETA-SELECTIVE AGONISTS FOR THE POTENTIAL TREATMENT OF JRNL TITL 3 ALZHEIMER'S DISEASE. JRNL REF J.MED.CHEM. V. 59 3489 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27011007 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00176 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 30141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2921 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2852 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2774 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.3462 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03960 REMARK 3 B22 (A**2) : 0.71960 REMARK 3 B33 (A**2) : 0.31990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.418 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.366 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7775 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10502 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2821 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 193 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1127 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7775 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 999 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9163 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.80 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% TO 22% PEG3350, 0.2M K-NA REMARK 280 TARTRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.90900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.01400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.90900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.01400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 313 REMARK 465 LYS A 314 REMARK 465 SER A 315 REMARK 465 ASP A 316 REMARK 465 GLN A 317 REMARK 465 GLY A 318 REMARK 465 VAL A 319 REMARK 465 GLU A 320 REMARK 465 GLY A 321 REMARK 465 PRO A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 THR A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 PRO A 332 REMARK 465 ASN A 333 REMARK 465 ASP A 334 REMARK 465 PRO A 335 REMARK 465 PRO A 529 REMARK 465 HIS A 530 REMARK 465 GLN A 531 REMARK 465 LEU A 532 REMARK 465 ALA A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 GLY A 536 REMARK 465 SER A 537 REMARK 465 GLY A 538 REMARK 465 SER A 539 REMARK 465 HIS A 540 REMARK 465 ASP A 549 REMARK 465 SER A 550 REMARK 465 SER A 551 REMARK 465 SER A 552 REMARK 465 LEU B 254 REMARK 465 GLY B 255 REMARK 465 SER B 478 REMARK 465 SER B 479 REMARK 465 SER B 480 REMARK 465 GLN C 313 REMARK 465 LYS C 314 REMARK 465 SER C 315 REMARK 465 ASP C 316 REMARK 465 GLN C 317 REMARK 465 GLY C 318 REMARK 465 VAL C 319 REMARK 465 GLU C 320 REMARK 465 GLY C 321 REMARK 465 PRO C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 324 REMARK 465 THR C 325 REMARK 465 GLY C 326 REMARK 465 GLY C 327 REMARK 465 SER C 328 REMARK 465 GLY C 329 REMARK 465 SER C 330 REMARK 465 SER C 331 REMARK 465 PRO C 332 REMARK 465 ASN C 333 REMARK 465 ASP C 334 REMARK 465 PRO C 529 REMARK 465 HIS C 530 REMARK 465 GLN C 531 REMARK 465 LEU C 532 REMARK 465 ALA C 533 REMARK 465 GLY C 534 REMARK 465 SER C 535 REMARK 465 GLY C 536 REMARK 465 SER C 537 REMARK 465 GLY C 538 REMARK 465 SER C 539 REMARK 465 HIS C 540 REMARK 465 ASP C 549 REMARK 465 SER C 550 REMARK 465 SER C 551 REMARK 465 SER C 552 REMARK 465 GLY D 217 REMARK 465 VAL D 218 REMARK 465 LEU D 254 REMARK 465 GLY D 255 REMARK 465 ALA D 256 REMARK 465 ASP D 257 REMARK 465 PRO D 258 REMARK 465 ALA D 259 REMARK 465 SER D 260 REMARK 465 GLY D 261 REMARK 465 SER D 478 REMARK 465 SER D 479 REMARK 465 SER D 480 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 393 27.13 49.58 REMARK 500 VAL A 413 30.89 -141.05 REMARK 500 GLN A 482 68.15 -161.48 REMARK 500 LYS B 331 -50.99 69.15 REMARK 500 PHE B 379 49.50 -90.40 REMARK 500 ASP B 382 4.18 -69.52 REMARK 500 GLU B 388 75.42 -119.85 REMARK 500 VAL B 459 -71.18 -107.05 REMARK 500 ASP C 393 -8.24 55.79 REMARK 500 GLU C 527 -73.37 -60.43 REMARK 500 LEU D 330 -126.62 51.39 REMARK 500 VAL D 459 -66.36 -99.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 668 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 668 D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HJS RELATED DB: PDB DBREF 5HJP A 299 533 UNP P28702 RXRB_HUMAN 299 533 DBREF 5HJP B 217 461 UNP P55055 NR1H2_HUMAN 216 460 DBREF 5HJP C 299 533 UNP P28702 RXRB_HUMAN 299 533 DBREF 5HJP D 217 461 UNP P55055 NR1H2_HUMAN 216 460 SEQADV 5HJP GLY A 534 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 535 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLY A 536 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 537 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLY A 538 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 539 UNP P28702 EXPRESSION TAG SEQADV 5HJP HIS A 540 UNP P28702 EXPRESSION TAG SEQADV 5HJP LYS A 541 UNP P28702 EXPRESSION TAG SEQADV 5HJP ILE A 542 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU A 543 UNP P28702 EXPRESSION TAG SEQADV 5HJP HIS A 544 UNP P28702 EXPRESSION TAG SEQADV 5HJP ARG A 545 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU A 546 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU A 547 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLN A 548 UNP P28702 EXPRESSION TAG SEQADV 5HJP ASP A 549 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 550 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 551 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER A 552 UNP P28702 EXPRESSION TAG SEQADV 5HJP ALA B 259 UNP P55055 GLN 258 ENGINEERED MUTATION SEQADV 5HJP GLY B 261 UNP P55055 ARG 260 ENGINEERED MUTATION SEQADV 5HJP SER B 262 UNP P55055 ASP 261 ENGINEERED MUTATION SEQADV 5HJP SER B 264 UNP P55055 ARG 263 ENGINEERED MUTATION SEQADV 5HJP GLY B 462 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 463 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLY B 464 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 465 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLY B 466 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 467 UNP P55055 EXPRESSION TAG SEQADV 5HJP HIS B 468 UNP P55055 EXPRESSION TAG SEQADV 5HJP LYS B 469 UNP P55055 EXPRESSION TAG SEQADV 5HJP ILE B 470 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU B 471 UNP P55055 EXPRESSION TAG SEQADV 5HJP HIS B 472 UNP P55055 EXPRESSION TAG SEQADV 5HJP ARG B 473 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU B 474 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU B 475 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLN B 476 UNP P55055 EXPRESSION TAG SEQADV 5HJP ASP B 477 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 478 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 479 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER B 480 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLY C 534 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 535 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLY C 536 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 537 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLY C 538 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 539 UNP P28702 EXPRESSION TAG SEQADV 5HJP HIS C 540 UNP P28702 EXPRESSION TAG SEQADV 5HJP LYS C 541 UNP P28702 EXPRESSION TAG SEQADV 5HJP ILE C 542 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU C 543 UNP P28702 EXPRESSION TAG SEQADV 5HJP HIS C 544 UNP P28702 EXPRESSION TAG SEQADV 5HJP ARG C 545 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU C 546 UNP P28702 EXPRESSION TAG SEQADV 5HJP LEU C 547 UNP P28702 EXPRESSION TAG SEQADV 5HJP GLN C 548 UNP P28702 EXPRESSION TAG SEQADV 5HJP ASP C 549 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 550 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 551 UNP P28702 EXPRESSION TAG SEQADV 5HJP SER C 552 UNP P28702 EXPRESSION TAG SEQADV 5HJP ALA D 259 UNP P55055 GLN 258 ENGINEERED MUTATION SEQADV 5HJP GLY D 261 UNP P55055 ARG 260 ENGINEERED MUTATION SEQADV 5HJP SER D 262 UNP P55055 ASP 261 ENGINEERED MUTATION SEQADV 5HJP SER D 264 UNP P55055 ARG 263 ENGINEERED MUTATION SEQADV 5HJP GLY D 462 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 463 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLY D 464 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 465 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLY D 466 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 467 UNP P55055 EXPRESSION TAG SEQADV 5HJP HIS D 468 UNP P55055 EXPRESSION TAG SEQADV 5HJP LYS D 469 UNP P55055 EXPRESSION TAG SEQADV 5HJP ILE D 470 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU D 471 UNP P55055 EXPRESSION TAG SEQADV 5HJP HIS D 472 UNP P55055 EXPRESSION TAG SEQADV 5HJP ARG D 473 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU D 474 UNP P55055 EXPRESSION TAG SEQADV 5HJP LEU D 475 UNP P55055 EXPRESSION TAG SEQADV 5HJP GLN D 476 UNP P55055 EXPRESSION TAG SEQADV 5HJP ASP D 477 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 478 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 479 UNP P55055 EXPRESSION TAG SEQADV 5HJP SER D 480 UNP P55055 EXPRESSION TAG SEQRES 1 A 254 MET PRO VAL ASP ARG ILE LEU GLU ALA GLU LEU ALA VAL SEQRES 2 A 254 GLU GLN LYS SER ASP GLN GLY VAL GLU GLY PRO GLY GLY SEQRES 3 A 254 THR GLY GLY SER GLY SER SER PRO ASN ASP PRO VAL THR SEQRES 4 A 254 ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU SEQRES 5 A 254 VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER SER LEU SEQRES 6 A 254 PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP SEQRES 7 A 254 ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE SEQRES 8 A 254 ASP VAL ARG ASP GLY ILE LEU LEU ALA THR GLY LEU HIS SEQRES 9 A 254 VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA SEQRES 10 A 254 ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET SEQRES 11 A 254 ARG ASP MET ARG MET ASP LYS THR GLU LEU GLY CYS LEU SEQRES 12 A 254 ARG ALA ILE ILE LEU PHE ASN PRO ASP ALA LYS GLY LEU SEQRES 13 A 254 SER ASN PRO SER GLU VAL GLU VAL LEU ARG GLU LYS VAL SEQRES 14 A 254 TYR ALA SER LEU GLU THR TYR CYS LYS GLN LYS TYR PRO SEQRES 15 A 254 GLU GLN GLN GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU SEQRES 16 A 254 PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS SEQRES 17 A 254 LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP SEQRES 18 A 254 THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN LEU SEQRES 19 A 254 ALA GLY SER GLY SER GLY SER HIS LYS ILE LEU HIS ARG SEQRES 20 A 254 LEU LEU GLN ASP SER SER SER SEQRES 1 B 264 GLY VAL GLN LEU THR ALA ALA GLN GLU LEU MET ILE GLN SEQRES 2 B 264 GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS ARG SER SEQRES 3 B 264 PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO LEU GLY SEQRES 4 B 264 ALA ASP PRO ALA SER GLY SER ALA SER GLN GLN ARG PHE SEQRES 5 B 264 ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL GLN GLU SEQRES 6 B 264 ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE LEU GLN SEQRES 7 B 264 LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS ALA SER SEQRES 8 B 264 THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG ARG TYR SEQRES 9 B 264 ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS ASP PHE SEQRES 10 B 264 THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY LEU GLN SEQRES 11 B 264 VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA SEQRES 12 B 264 MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR ALA LEU SEQRES 13 B 264 LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG PRO ASN SEQRES 14 B 264 VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN GLN PRO SEQRES 15 B 264 TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE LYS ARG SEQRES 16 B 264 PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU MET LYS SEQRES 17 B 264 LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU SEQRES 18 B 264 GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO SEQRES 19 B 264 PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU GLY SER SEQRES 20 B 264 GLY SER GLY SER HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 21 B 264 ASP SER SER SER SEQRES 1 C 254 MET PRO VAL ASP ARG ILE LEU GLU ALA GLU LEU ALA VAL SEQRES 2 C 254 GLU GLN LYS SER ASP GLN GLY VAL GLU GLY PRO GLY GLY SEQRES 3 C 254 THR GLY GLY SER GLY SER SER PRO ASN ASP PRO VAL THR SEQRES 4 C 254 ASN ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU SEQRES 5 C 254 VAL GLU TRP ALA LYS ARG ILE PRO HIS PHE SER SER LEU SEQRES 6 C 254 PRO LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP SEQRES 7 C 254 ASN GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE SEQRES 8 C 254 ASP VAL ARG ASP GLY ILE LEU LEU ALA THR GLY LEU HIS SEQRES 9 C 254 VAL HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA SEQRES 10 C 254 ILE PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET SEQRES 11 C 254 ARG ASP MET ARG MET ASP LYS THR GLU LEU GLY CYS LEU SEQRES 12 C 254 ARG ALA ILE ILE LEU PHE ASN PRO ASP ALA LYS GLY LEU SEQRES 13 C 254 SER ASN PRO SER GLU VAL GLU VAL LEU ARG GLU LYS VAL SEQRES 14 C 254 TYR ALA SER LEU GLU THR TYR CYS LYS GLN LYS TYR PRO SEQRES 15 C 254 GLU GLN GLN GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU SEQRES 16 C 254 PRO ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS SEQRES 17 C 254 LEU PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP SEQRES 18 C 254 THR PHE LEU MET GLU MET LEU GLU ALA PRO HIS GLN LEU SEQRES 19 C 254 ALA GLY SER GLY SER GLY SER HIS LYS ILE LEU HIS ARG SEQRES 20 C 254 LEU LEU GLN ASP SER SER SER SEQRES 1 D 264 GLY VAL GLN LEU THR ALA ALA GLN GLU LEU MET ILE GLN SEQRES 2 D 264 GLN LEU VAL ALA ALA GLN LEU GLN CYS ASN LYS ARG SER SEQRES 3 D 264 PHE SER ASP GLN PRO LYS VAL THR PRO TRP PRO LEU GLY SEQRES 4 D 264 ALA ASP PRO ALA SER GLY SER ALA SER GLN GLN ARG PHE SEQRES 5 D 264 ALA HIS PHE THR GLU LEU ALA ILE ILE SER VAL GLN GLU SEQRES 6 D 264 ILE VAL ASP PHE ALA LYS GLN VAL PRO GLY PHE LEU GLN SEQRES 7 D 264 LEU GLY ARG GLU ASP GLN ILE ALA LEU LEU LYS ALA SER SEQRES 8 D 264 THR ILE GLU ILE MET LEU LEU GLU THR ALA ARG ARG TYR SEQRES 9 D 264 ASN HIS GLU THR GLU CYS ILE THR PHE LEU LYS ASP PHE SEQRES 10 D 264 THR TYR SER LYS ASP ASP PHE HIS ARG ALA GLY LEU GLN SEQRES 11 D 264 VAL GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA SEQRES 12 D 264 MET ARG ARG LEU GLY LEU ASP ASP ALA GLU TYR ALA LEU SEQRES 13 D 264 LEU ILE ALA ILE ASN ILE PHE SER ALA ASP ARG PRO ASN SEQRES 14 D 264 VAL GLN GLU PRO GLY ARG VAL GLU ALA LEU GLN GLN PRO SEQRES 15 D 264 TYR VAL GLU ALA LEU LEU SER TYR THR ARG ILE LYS ARG SEQRES 16 D 264 PRO GLN ASP GLN LEU ARG PHE PRO ARG MET LEU MET LYS SEQRES 17 D 264 LEU VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU SEQRES 18 D 264 GLN VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO SEQRES 19 D 264 PRO LEU LEU SER GLU ILE TRP ASP VAL HIS GLU GLY SER SEQRES 20 D 264 GLY SER GLY SER HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 21 D 264 ASP SER SER SER HET 668 B 501 35 HET PEG B 502 7 HET PEG C 601 7 HET 668 D 501 35 HETNAM 668 2-CHLORO-4-{1'-[(2R)-2-HYDROXY-3-METHYL-2- HETNAM 2 668 (TRIFLUOROMETHYL)BUTANOYL]-4,4'-BIPIPERIDIN-1-YL}-N,N- HETNAM 3 668 DIMETHYLBENZAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 668 2(C25 H35 CL F3 N3 O3) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 9 HOH *46(H2 O) HELIX 1 AA1 PRO A 300 ALA A 310 1 11 HELIX 2 AA2 THR A 337 ILE A 357 1 21 HELIX 3 AA3 PRO A 364 SER A 388 1 25 HELIX 4 AA4 ILE A 389 VAL A 391 5 3 HELIX 5 AA5 ARG A 405 ALA A 411 1 7 HELIX 6 AA6 VAL A 413 LEU A 424 1 12 HELIX 7 AA7 LEU A 424 MET A 431 1 8 HELIX 8 AA8 ASP A 434 PHE A 447 1 14 HELIX 9 AA9 ASN A 456 TYR A 479 1 24 HELIX 10 AB1 GLY A 484 LEU A 491 1 8 HELIX 11 AB2 LEU A 491 GLY A 514 1 24 HELIX 12 AB3 ASP A 519 GLU A 527 1 9 HELIX 13 AB4 ILE A 542 LEU A 547 1 6 HELIX 14 AB5 THR B 221 ASP B 245 1 25 HELIX 15 AB6 GLN B 246 VAL B 249 5 4 HELIX 16 AB7 GLY B 261 VAL B 289 1 29 HELIX 17 AB8 GLY B 291 LEU B 295 5 5 HELIX 18 AB9 GLY B 296 ARG B 318 1 23 HELIX 19 AC1 SER B 336 ALA B 343 1 8 HELIX 20 AC2 GLN B 346 GLY B 364 1 19 HELIX 21 AC3 ASP B 366 PHE B 379 1 14 HELIX 22 AC4 GLU B 388 ARG B 411 1 24 HELIX 23 AC5 LEU B 416 GLN B 445 1 30 HELIX 24 AC6 PRO B 450 ASP B 458 1 9 HELIX 25 AC7 GLY B 462 GLY B 466 5 5 HELIX 26 AC8 LYS B 469 ASP B 477 1 9 HELIX 27 AC9 PRO C 300 VAL C 311 1 12 HELIX 28 AD1 VAL C 336 ILE C 357 1 22 HELIX 29 AD2 PRO C 364 SER C 388 1 25 HELIX 30 AD3 ARG C 405 ALA C 411 1 7 HELIX 31 AD4 VAL C 413 LEU C 424 1 12 HELIX 32 AD5 LEU C 424 MET C 431 1 8 HELIX 33 AD6 ASP C 434 PHE C 447 1 14 HELIX 34 AD7 ASN C 456 TYR C 479 1 24 HELIX 35 AD8 GLY C 484 LEU C 491 1 8 HELIX 36 AD9 ARG C 492 GLY C 514 1 23 HELIX 37 AE1 ASP C 519 ALA C 528 1 10 HELIX 38 AE2 ILE C 542 GLN C 548 1 7 HELIX 39 AE3 THR D 221 SER D 244 1 24 HELIX 40 AE4 ALA D 263 GLN D 288 1 26 HELIX 41 AE5 GLY D 291 LEU D 295 5 5 HELIX 42 AE6 GLY D 296 ARG D 318 1 23 HELIX 43 AE7 SER D 336 ALA D 343 1 8 HELIX 44 AE8 GLN D 346 GLY D 364 1 19 HELIX 45 AE9 ASP D 366 PHE D 379 1 14 HELIX 46 AF1 GLU D 388 ARG D 411 1 24 HELIX 47 AF2 LEU D 416 GLN D 445 1 30 HELIX 48 AF3 PRO D 450 ASP D 458 1 9 HELIX 49 AF4 GLY D 462 GLY D 466 5 5 HELIX 50 AF5 LYS D 469 GLN D 476 1 8 SHEET 1 AA1 2 GLY A 394 LEU A 396 0 SHEET 2 AA1 2 HIS A 402 HIS A 404 -1 O VAL A 403 N ILE A 395 SHEET 1 AA2 3 TYR B 320 ASN B 321 0 SHEET 2 AA2 3 CYS B 326 PHE B 329 -1 O CYS B 326 N ASN B 321 SHEET 3 AA2 3 PHE B 333 TYR B 335 -1 O PHE B 333 N PHE B 329 SHEET 1 AA3 2 GLY C 394 LEU C 396 0 SHEET 2 AA3 2 HIS C 402 HIS C 404 -1 O VAL C 403 N ILE C 395 SHEET 1 AA4 3 TYR D 320 ASN D 321 0 SHEET 2 AA4 3 CYS D 326 PHE D 329 -1 O CYS D 326 N ASN D 321 SHEET 3 AA4 3 PHE D 333 TYR D 335 -1 O TYR D 335 N ILE D 327 SITE 1 AC1 19 ASN B 239 SER B 242 THR B 272 LEU B 274 SITE 2 AC1 19 ALA B 275 ILE B 277 GLU B 281 MET B 312 SITE 3 AC1 19 THR B 316 ARG B 319 PHE B 329 LEU B 330 SITE 4 AC1 19 LEU B 345 PHE B 349 HIS B 435 GLN B 438 SITE 5 AC1 19 LEU B 442 LEU B 449 TRP B 457 SITE 1 AC2 3 VAL B 218 GLN B 219 LEU B 220 SITE 1 AC3 2 PRO B 251 LYS C 478 SITE 1 AC4 18 ASN D 239 PHE D 268 THR D 272 LEU D 274 SITE 2 AC4 18 ALA D 275 ILE D 277 SER D 278 MET D 312 SITE 3 AC4 18 THR D 316 ARG D 319 PHE D 329 LEU D 330 SITE 4 AC4 18 LEU D 345 PHE D 349 HIS D 435 GLN D 438 SITE 5 AC4 18 LEU D 442 TRP D 457 CRYST1 66.770 106.028 139.818 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007152 0.00000