HEADER TRANSPORT PROTEIN 14-JAN-16 5HK7 TITLE BACTERIAL SODIUM CHANNEL PORE, 2.95 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 143-288; COMPND 5 SYNONYM: SODIUM CHANNEL; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALKALILIMNICOLA EHRLICHII; SOURCE 3 ORGANISM_TAXID: 351052; SOURCE 4 GENE: MLG_0322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL SODIUM CHANNEL PORE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SHAYA,F.FINDEISEN,A.ROHAIM,D.L.MINOR REVDAT 2 27-SEP-23 5HK7 1 REMARK REVDAT 1 09-MAR-16 5HK7 0 JRNL AUTH C.ARRIGONI,A.ROHAIM,D.SHAYA,F.FINDEISEN,R.A.STEIN,S.R.NURVA, JRNL AUTH 2 S.MISHRA,H.S.MCHAOURAB,D.L.MINOR JRNL TITL UNFOLDING OF A TEMPERATURE-SENSITIVE DOMAIN CONTROLS JRNL TITL 2 VOLTAGE-GATED CHANNEL ACTIVATION. JRNL REF CELL V. 164 922 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 26919429 JRNL DOI 10.1016/J.CELL.2016.02.001 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 40458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2185 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.02000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -3.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4776 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6444 ; 2.173 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3470 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2212 ; 8.584 ; 8.687 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2759 ;12.448 ;13.057 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2564 ;11.890 ; 9.415 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 20661 ;19.411 ;88.800 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5HK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42643 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 80.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.20100 REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 2.96000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LTO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG300, 100 MM SODIUM ACETATE, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.18500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.18500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.26000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.18500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 76.75500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.26000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 137 REMARK 465 PRO A 138 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 PRO A 141 REMARK 465 SER A 142 REMARK 465 LEU A 143 REMARK 465 LEU A 144 REMARK 465 ARG A 145 REMARK 465 ALA A 146 REMARK 465 ILE A 147 REMARK 465 LYS A 287 REMARK 465 ARG A 288 REMARK 465 GLY B 137 REMARK 465 PRO B 138 REMARK 465 SER B 139 REMARK 465 SER B 140 REMARK 465 PRO B 141 REMARK 465 SER B 142 REMARK 465 LEU B 143 REMARK 465 LEU B 144 REMARK 465 ARG B 145 REMARK 465 ALA B 146 REMARK 465 ILE B 147 REMARK 465 GLY B 286 REMARK 465 LYS B 287 REMARK 465 ARG B 288 REMARK 465 GLY C 137 REMARK 465 PRO C 138 REMARK 465 SER C 139 REMARK 465 SER C 140 REMARK 465 PRO C 141 REMARK 465 SER C 142 REMARK 465 LEU C 143 REMARK 465 LEU C 144 REMARK 465 ARG C 145 REMARK 465 ALA C 146 REMARK 465 ILE C 147 REMARK 465 GLY C 286 REMARK 465 LYS C 287 REMARK 465 ARG C 288 REMARK 465 GLY D 137 REMARK 465 PRO D 138 REMARK 465 SER D 139 REMARK 465 SER D 140 REMARK 465 PRO D 141 REMARK 465 SER D 142 REMARK 465 LEU D 143 REMARK 465 LEU D 144 REMARK 465 ARG D 145 REMARK 465 ALA D 146 REMARK 465 ILE D 147 REMARK 465 GLY D 286 REMARK 465 LYS D 287 REMARK 465 ARG D 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 GLN B 269 CG CD OE1 NE2 REMARK 470 LYS C 252 CG CD CE NZ REMARK 470 ARG C 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 170 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE C 222 OG SER C 226 1.79 REMARK 500 O VAL A 229 CD2 PHE A 233 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 171 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU A 270 CB - CG - CD1 ANGL. DEV. = -12.4 DEGREES REMARK 500 LEU A 270 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 MET C 167 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 LEU D 171 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG D 205 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 245 -67.27 -146.72 REMARK 500 ILE B 238 -70.00 -46.27 REMARK 500 HIS B 245 -65.81 -136.37 REMARK 500 ILE C 203 -70.64 -110.63 REMARK 500 HIS C 245 -54.20 -137.17 REMARK 500 ALA D 151 -4.63 -54.13 REMARK 500 HIS D 245 -63.09 -130.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 244 HIS A 245 -145.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VVA A 302 REMARK 610 VVA A 303 REMARK 610 VVA B 301 REMARK 610 VVA B 302 REMARK 610 VVA B 303 REMARK 610 VVA C 301 REMARK 610 VVA C 302 REMARK 610 VVA C 303 REMARK 610 VVA C 304 REMARK 610 VVA D 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VVA C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HJ8 RELATED DB: PDB REMARK 900 RELATED ID: 5HK6 RELATED DB: PDB REMARK 900 RELATED ID: 5HKD RELATED DB: PDB REMARK 900 RELATED ID: 5HKT RELATED DB: PDB REMARK 900 RELATED ID: 5HKU RELATED DB: PDB DBREF 5HK7 A 143 288 UNP Q0ABW0 Q0ABW0_ALKEH 143 288 DBREF 5HK7 B 143 288 UNP Q0ABW0 Q0ABW0_ALKEH 143 288 DBREF 5HK7 C 143 288 UNP Q0ABW0 Q0ABW0_ALKEH 143 288 DBREF 5HK7 D 143 288 UNP Q0ABW0 Q0ABW0_ALKEH 143 288 SEQADV 5HK7 GLY A 137 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO A 138 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER A 139 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER A 140 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO A 141 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER A 142 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 GLY B 137 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO B 138 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER B 139 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER B 140 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO B 141 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER B 142 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 GLY C 137 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO C 138 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER C 139 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER C 140 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO C 141 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER C 142 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 GLY D 137 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO D 138 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER D 139 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER D 140 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 PRO D 141 UNP Q0ABW0 EXPRESSION TAG SEQADV 5HK7 SER D 142 UNP Q0ABW0 EXPRESSION TAG SEQRES 1 A 152 GLY PRO SER SER PRO SER LEU LEU ARG ALA ILE PRO GLY SEQRES 2 A 152 ILE ALA TRP ILE ALA LEU LEU LEU LEU VAL ILE PHE TYR SEQRES 3 A 152 VAL PHE ALA VAL MET GLY THR LYS LEU PHE ALA GLN SER SEQRES 4 A 152 PHE PRO GLU TRP PHE GLY THR LEU GLY ALA SER MET TYR SEQRES 5 A 152 THR LEU PHE GLN VAL MET THR LEU GLU SER TRP SER MET SEQRES 6 A 152 GLY ILE ALA ARG PRO VAL ILE GLU ALA TYR PRO TRP ALA SEQRES 7 A 152 TRP ILE TYR PHE VAL SER PHE ILE LEU VAL SER SER PHE SEQRES 8 A 152 THR VAL LEU ASN LEU PHE ILE GLY ILE ILE ILE GLU SER SEQRES 9 A 152 MET GLN SER ALA HIS TRP GLU ALA GLU ASP ALA LYS ARG SEQRES 10 A 152 ILE GLU GLN GLU GLN ARG ALA HIS ASP GLU ARG LEU GLU SEQRES 11 A 152 MET LEU GLN LEU ILE ARG ASP LEU SER SER LYS VAL ASP SEQRES 12 A 152 ARG LEU GLU ARG ARG SER GLY LYS ARG SEQRES 1 B 152 GLY PRO SER SER PRO SER LEU LEU ARG ALA ILE PRO GLY SEQRES 2 B 152 ILE ALA TRP ILE ALA LEU LEU LEU LEU VAL ILE PHE TYR SEQRES 3 B 152 VAL PHE ALA VAL MET GLY THR LYS LEU PHE ALA GLN SER SEQRES 4 B 152 PHE PRO GLU TRP PHE GLY THR LEU GLY ALA SER MET TYR SEQRES 5 B 152 THR LEU PHE GLN VAL MET THR LEU GLU SER TRP SER MET SEQRES 6 B 152 GLY ILE ALA ARG PRO VAL ILE GLU ALA TYR PRO TRP ALA SEQRES 7 B 152 TRP ILE TYR PHE VAL SER PHE ILE LEU VAL SER SER PHE SEQRES 8 B 152 THR VAL LEU ASN LEU PHE ILE GLY ILE ILE ILE GLU SER SEQRES 9 B 152 MET GLN SER ALA HIS TRP GLU ALA GLU ASP ALA LYS ARG SEQRES 10 B 152 ILE GLU GLN GLU GLN ARG ALA HIS ASP GLU ARG LEU GLU SEQRES 11 B 152 MET LEU GLN LEU ILE ARG ASP LEU SER SER LYS VAL ASP SEQRES 12 B 152 ARG LEU GLU ARG ARG SER GLY LYS ARG SEQRES 1 C 152 GLY PRO SER SER PRO SER LEU LEU ARG ALA ILE PRO GLY SEQRES 2 C 152 ILE ALA TRP ILE ALA LEU LEU LEU LEU VAL ILE PHE TYR SEQRES 3 C 152 VAL PHE ALA VAL MET GLY THR LYS LEU PHE ALA GLN SER SEQRES 4 C 152 PHE PRO GLU TRP PHE GLY THR LEU GLY ALA SER MET TYR SEQRES 5 C 152 THR LEU PHE GLN VAL MET THR LEU GLU SER TRP SER MET SEQRES 6 C 152 GLY ILE ALA ARG PRO VAL ILE GLU ALA TYR PRO TRP ALA SEQRES 7 C 152 TRP ILE TYR PHE VAL SER PHE ILE LEU VAL SER SER PHE SEQRES 8 C 152 THR VAL LEU ASN LEU PHE ILE GLY ILE ILE ILE GLU SER SEQRES 9 C 152 MET GLN SER ALA HIS TRP GLU ALA GLU ASP ALA LYS ARG SEQRES 10 C 152 ILE GLU GLN GLU GLN ARG ALA HIS ASP GLU ARG LEU GLU SEQRES 11 C 152 MET LEU GLN LEU ILE ARG ASP LEU SER SER LYS VAL ASP SEQRES 12 C 152 ARG LEU GLU ARG ARG SER GLY LYS ARG SEQRES 1 D 152 GLY PRO SER SER PRO SER LEU LEU ARG ALA ILE PRO GLY SEQRES 2 D 152 ILE ALA TRP ILE ALA LEU LEU LEU LEU VAL ILE PHE TYR SEQRES 3 D 152 VAL PHE ALA VAL MET GLY THR LYS LEU PHE ALA GLN SER SEQRES 4 D 152 PHE PRO GLU TRP PHE GLY THR LEU GLY ALA SER MET TYR SEQRES 5 D 152 THR LEU PHE GLN VAL MET THR LEU GLU SER TRP SER MET SEQRES 6 D 152 GLY ILE ALA ARG PRO VAL ILE GLU ALA TYR PRO TRP ALA SEQRES 7 D 152 TRP ILE TYR PHE VAL SER PHE ILE LEU VAL SER SER PHE SEQRES 8 D 152 THR VAL LEU ASN LEU PHE ILE GLY ILE ILE ILE GLU SER SEQRES 9 D 152 MET GLN SER ALA HIS TRP GLU ALA GLU ASP ALA LYS ARG SEQRES 10 D 152 ILE GLU GLN GLU GLN ARG ALA HIS ASP GLU ARG LEU GLU SEQRES 11 D 152 MET LEU GLN LEU ILE ARG ASP LEU SER SER LYS VAL ASP SEQRES 12 D 152 ARG LEU GLU ARG ARG SER GLY LYS ARG HET CL A 301 1 HET VVA A 302 21 HET VVA A 303 13 HET CL A 304 1 HET VVA B 301 21 HET VVA B 302 21 HET VVA B 303 17 HET NA B 304 1 HET VVA C 301 21 HET VVA C 302 10 HET VVA C 303 6 HET VVA C 304 11 HET NA C 305 1 HET VVA D 301 10 HETNAM CL CHLORIDE ION HETNAM VVA 2-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}ETHYL HETNAM 2 VVA HEPTADECANOATE HETNAM NA SODIUM ION FORMUL 5 CL 2(CL 1-) FORMUL 6 VVA 10(C21 H44 N O6 P) FORMUL 12 NA 2(NA 1+) FORMUL 19 HOH *4(H2 O) HELIX 1 AA1 GLY A 149 ALA A 173 1 25 HELIX 2 AA2 PHE A 176 GLY A 181 1 6 HELIX 3 AA3 THR A 182 THR A 195 1 14 HELIX 4 AA4 ILE A 203 TYR A 211 1 9 HELIX 5 AA5 ALA A 214 HIS A 245 1 32 HELIX 6 AA6 HIS A 245 SER A 285 1 41 HELIX 7 AA7 ILE B 150 ALA B 173 1 24 HELIX 8 AA8 PHE B 176 GLY B 181 1 6 HELIX 9 AA9 THR B 182 THR B 195 1 14 HELIX 10 AB1 PRO B 206 TYR B 211 1 6 HELIX 11 AB2 ALA B 214 HIS B 245 1 32 HELIX 12 AB3 HIS B 245 SER B 285 1 41 HELIX 13 AB4 ILE C 150 ALA C 173 1 24 HELIX 14 AB5 PHE C 176 GLY C 181 1 6 HELIX 15 AB6 THR C 182 THR C 195 1 14 HELIX 16 AB7 ILE C 203 TYR C 211 1 9 HELIX 17 AB8 ALA C 214 HIS C 245 1 32 HELIX 18 AB9 HIS C 245 SER C 285 1 41 HELIX 19 AC1 ILE D 150 ALA D 173 1 24 HELIX 20 AC2 PHE D 176 GLY D 181 1 6 HELIX 21 AC3 THR D 182 THR D 195 1 14 HELIX 22 AC4 ILE D 203 GLU D 209 1 7 HELIX 23 AC5 TYR D 211 TRP D 213 5 3 HELIX 24 AC6 ALA D 214 HIS D 245 1 32 HELIX 25 AC7 HIS D 245 VAL D 278 1 34 LINK NA NA B 304 O HOH D 401 1555 1555 2.52 SITE 1 AC1 4 ARG A 264 ARG B 264 ARG C 264 ARG D 264 SITE 1 AC2 3 TRP A 215 HOH A 401 GLY D 184 SITE 1 AC3 2 MET A 194 SER A 226 SITE 1 AC4 4 TRP A 246 TRP B 246 TRP C 246 TRP D 246 SITE 1 AC5 6 PHE A 161 GLU A 178 GLY A 184 TYR A 188 SITE 2 AC5 6 ILE B 208 TRP B 215 SITE 1 AC6 7 GLU B 178 GLY B 184 MET B 187 TYR B 188 SITE 2 AC6 7 PHE B 191 PRO C 212 TRP C 215 SITE 1 AC7 1 MET B 194 SITE 1 AC8 3 GLU B 197 SER B 198 HOH D 401 SITE 1 AC9 8 PHE C 161 GLU C 178 GLY C 184 MET C 187 SITE 2 AC9 8 TYR C 188 VVA C 302 ILE D 208 TRP D 215 SITE 1 AD1 2 MET C 187 VVA C 301 SITE 1 AD2 1 LEU C 196 CRYST1 153.510 160.520 166.370 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006011 0.00000