HEADER SOLUTE-BINDING PROTEIN 14-JAN-16 5HKO TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER SOLUTE BINDING PROTEIN MSMEG_3598 TITLE 2 FROM MYCOBACTERIUM SMEGMATIS STR. MC2 155, TARGET EFI-510969, IN TITLE 3 COMPLEX WITH L-SORBITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, CARBOHYDRATE UPTAKE TRANSPORTER-2 (CUT2) COMPND 3 FAMILY, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PERIPLASMIC SUGAR-BINDING PROTEINS; COMPND 6 EC: 3.6.3.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MSMEG_3598, MSMEI_3515; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROTH,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,J.KOSS, AUTHOR 2 S.R.WASSERMAN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 27-SEP-23 5HKO 1 LINK REVDAT 3 25-DEC-19 5HKO 1 REMARK REVDAT 2 27-SEP-17 5HKO 1 REMARK REVDAT 1 03-FEB-16 5HKO 0 JRNL AUTH Y.ROTH,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO, JRNL AUTH 2 J.BENACH,J.KOSS,S.R.WASSERMAN,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF ABC TRANSPORTER SOLUTE BINDING PROTEIN JRNL TITL 2 MSMEG_3598 FROM MYCOBACTERIUM SMEGMATIS STR. MC2 155, TARGET JRNL TITL 3 EFI-510969, IN COMPLEX WITH L-SORBITOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 86963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 340 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2436 ; 0.036 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2376 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3302 ; 2.828 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5478 ; 1.210 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;41.938 ;27.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;12.051 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;12.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 1.273 ; 0.873 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1280 ; 1.242 ; 0.869 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 1.833 ; 1.310 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9217 -23.3380 1.9355 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: 0.0185 REMARK 3 T33: 0.0025 T12: 0.0017 REMARK 3 T13: 0.0010 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.5820 L22: 0.5282 REMARK 3 L33: 0.1709 L12: 0.2019 REMARK 3 L13: -0.0234 L23: 0.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.0290 S13: -0.0068 REMARK 3 S21: 0.0058 S22: 0.0235 S23: 0.0155 REMARK 3 S31: 0.0152 S32: 0.0100 S33: -0.0058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5HKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4RS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM L-SORBITOL); RESERVOIR (MCSG4 A7)(0.2 M ZINC ACETATE REMARK 280 DIHYDRATE, 0.1 M IMIDAZOLE PH 8, 2.5 M SODIUM CHLORIDE); REMARK 280 CRYOPROTECTION (20% DIETHYLENE GLYCOL, 80% RESERVOIR), PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.47350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.57650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.57650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.47350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 ASP A 33 REMARK 465 GLN A 348 REMARK 465 PRO A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 412 O HOH A 504 1.13 REMARK 500 ZN ZN A 406 O HOH A 713 1.61 REMARK 500 ZN ZN A 412 CL CL A 420 1.67 REMARK 500 OE2 GLU A 201 O HOH A 501 1.97 REMARK 500 O HOH A 509 O HOH A 569 1.98 REMARK 500 O HOH A 578 O HOH A 754 1.99 REMARK 500 O HOH A 534 O HOH A 603 2.02 REMARK 500 NE2 HIS A 313 O HOH A 502 2.06 REMARK 500 OE2 GLU A 170 CL CL A 420 2.07 REMARK 500 O HOH A 550 O HOH A 565 2.07 REMARK 500 OD1 ASP A 74 O HOH A 503 2.09 REMARK 500 CL CL A 424 N1 IMD A 428 2.12 REMARK 500 OE1 GLU A 170 O HOH A 504 2.14 REMARK 500 OD2 ASP A 226 O HOH A 505 2.14 REMARK 500 OD2 ASP A 262 O HOH A 506 2.16 REMARK 500 CL CL A 424 C5 IMD A 428 2.17 REMARK 500 OG SER A 84 O HOH A 507 2.17 REMARK 500 OG SER A 70 O HOH A 508 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 681 4545 1.91 REMARK 500 CL CL A 424 O HOH A 535 4545 2.07 REMARK 500 O HOH A 729 O HOH A 738 4545 2.07 REMARK 500 O HOH A 675 O HOH A 692 4445 2.10 REMARK 500 O HOH A 518 O HOH A 732 3555 2.11 REMARK 500 O HOH A 515 O HOH A 765 3544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 50 CD GLU A 50 OE1 0.089 REMARK 500 TYR A 58 CD1 TYR A 58 CE1 0.123 REMARK 500 TYR A 58 CZ TYR A 58 OH 0.213 REMARK 500 TYR A 58 CZ TYR A 58 CE2 -0.117 REMARK 500 ASP A 74 CG ASP A 74 OD2 -0.169 REMARK 500 GLU A 125 CG GLU A 125 CD -0.160 REMARK 500 GLU A 125 CD GLU A 125 OE2 0.094 REMARK 500 ASP A 128 CB ASP A 128 CG 0.179 REMARK 500 ASP A 128 CG ASP A 128 OD2 -0.220 REMARK 500 GLU A 144 CD GLU A 144 OE1 0.076 REMARK 500 GLU A 170 CD GLU A 170 OE2 0.076 REMARK 500 LYS A 236 C LYS A 236 O 0.128 REMARK 500 SER A 276 CB SER A 276 OG -0.084 REMARK 500 GLY A 288 CA GLY A 288 C -0.123 REMARK 500 LYS A 304 CB LYS A 304 CG -0.168 REMARK 500 GLN A 319 CG GLN A 319 CD 0.153 REMARK 500 TYR A 340 CE1 TYR A 340 CZ -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 58 CG - CD1 - CE1 ANGL. DEV. = -8.8 DEGREES REMARK 500 TYR A 58 CG - CD2 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TYR A 58 CZ - CE2 - CD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 186 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 262 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PHE A 263 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 283 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 LYS A 292 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 294 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 308 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP A 323 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 58.85 31.47 REMARK 500 ASN A 121 -35.95 76.86 REMARK 500 ASP A 249 -39.15 137.65 REMARK 500 GLU A 341 11.69 -142.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 173 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 413 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD2 REMARK 620 2 ASP A 150 OD2 58.2 REMARK 620 3 IMD A 426 N1 101.3 48.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 GLU A 252 OE1 99.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 IMD A 427 N3 102.6 REMARK 620 3 ACT A 432 OXT 86.7 155.1 REMARK 620 4 ACT A 432 O 124.5 103.6 53.5 REMARK 620 5 HOH A 663 O 106.0 116.0 82.6 104.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 ASP A 186 OD2 61.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 ASP A 74 OD2 50.7 REMARK 620 3 SER A 76 OG 125.8 77.4 REMARK 620 4 HOH A 503 O 54.3 104.9 165.7 REMARK 620 5 HOH A 523 O 151.2 158.1 81.9 96.9 REMARK 620 6 HOH A 653 O 105.4 89.4 86.4 107.7 82.1 REMARK 620 7 HOH A 690 O 73.2 84.0 88.6 77.8 102.7 172.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 415 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 125 OE2 REMARK 620 2 HOH A 751 O 112.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 ASP A 178 OD1 56.3 REMARK 620 3 ACT A 431 O 110.3 115.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 136 OD2 REMARK 620 2 HOH A 724 O 98.1 REMARK 620 3 HOH A 741 O 110.9 102.5 REMARK 620 4 HOH A 750 O 117.0 120.6 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 218 OD2 REMARK 620 2 ACT A 433 OXT 135.6 REMARK 620 3 HOH A 735 O 109.2 98.2 REMARK 620 4 HOH A 736 O 107.1 100.5 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE1 REMARK 620 2 GLU A 237 OE2 55.1 REMARK 620 3 IMD A 429 N1 85.5 133.4 REMARK 620 4 IMD A 430 N1 136.7 94.9 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD2 REMARK 620 2 HOH A 744 O 106.8 REMARK 620 3 HOH A 764 O 115.3 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 337 OD1 REMARK 620 2 ASP A 337 OD2 60.8 REMARK 620 3 HOH A 659 O 83.2 92.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 428 N1 REMARK 620 2 HOH A 535 O 98.2 REMARK 620 3 HOH A 753 O 110.0 111.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 62W A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 433 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510969 RELATED DB: TARGETTRACK DBREF 5HKO A 25 349 UNP A0QYB3 A0QYB3_MYCS2 25 349 SEQADV 5HKO MET A 2 UNP A0QYB3 INITIATING METHIONINE SEQADV 5HKO HIS A 3 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO HIS A 4 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO HIS A 5 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO HIS A 6 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO HIS A 7 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO HIS A 8 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO SER A 9 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO SER A 10 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO GLY A 11 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO VAL A 12 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO ASP A 13 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO LEU A 14 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO GLY A 15 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO THR A 16 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO GLU A 17 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO ASN A 18 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO LEU A 19 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO TYR A 20 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO PHE A 21 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO GLN A 22 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO SER A 23 UNP A0QYB3 EXPRESSION TAG SEQADV 5HKO MET A 24 UNP A0QYB3 EXPRESSION TAG SEQRES 1 A 348 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 348 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA GLY ASP SEQRES 3 A 348 THR ALA ALA ASN SER ASP THR LYS ARG ILE GLY VAL THR SEQRES 4 A 348 VAL TYR ASP MET SER SER PHE ILE THR GLU GLY LYS GLU SEQRES 5 A 348 GLY MET ASP THR TYR ALA LYS ALA ASN ASN ILE GLU LEU SEQRES 6 A 348 VAL TRP ASN SER ALA ASN ASN ASP VAL SER THR GLN ALA SEQRES 7 A 348 SER GLN VAL ASP SER LEU ILE ASN GLN GLY VAL ASP ALA SEQRES 8 A 348 ILE ILE VAL VAL PRO VAL GLN ALA ASP SER LEU GLY PRO SEQRES 9 A 348 GLN VAL ALA SER ALA LYS SER LYS GLY ILE PRO LEU LEU SEQRES 10 A 348 ALA VAL ASN ALA ALA LEU GLU THR PRO ASP LEU ALA GLY SEQRES 11 A 348 ASN VAL GLN PRO ASP ASP VAL ALA ALA GLY ALA GLN GLU SEQRES 12 A 348 MET GLN MET MET ALA ASP ARG LEU GLY GLY LYS GLY ASN SEQRES 13 A 348 ILE VAL ILE LEU GLN GLY PRO LEU GLY GLY SER GLY GLU SEQRES 14 A 348 ILE ASN ARG GLY LYS GLY ILE ASP GLN VAL LEU ALA LYS SEQRES 15 A 348 TYR PRO ASP ILE LYS VAL LEU ALA LYS ASP THR ALA ASN SEQRES 16 A 348 TRP LYS ARG ASP GLU ALA VAL ASN LYS MET LYS ASN TRP SEQRES 17 A 348 ILE SER SER PHE GLY PRO GLN ILE ASP GLY VAL VAL ALA SEQRES 18 A 348 GLN ASN ASP ASP MET GLY LEU GLY ALA LEU GLN ALA LEU SEQRES 19 A 348 LYS GLU ALA GLY ARG THR GLY VAL PRO ILE VAL GLY ILE SEQRES 20 A 348 ASP GLY ILE GLU ASP GLY LEU ASN ALA VAL LYS SER GLY SEQRES 21 A 348 ASP PHE ILE GLY THR SER LEU GLN ASN GLY THR VAL GLU SEQRES 22 A 348 LEU SER ALA GLY LEU ALA VAL ALA ASP ALA LEU VAL LYS SEQRES 23 A 348 GLY GLU ASP VAL LYS THR ASP PRO VAL TYR VAL MET PRO SEQRES 24 A 348 ALA ILE THR LYS ASP ASN VAL ASP VAL ALA ILE GLU HIS SEQRES 25 A 348 VAL VAL THR GLU ARG GLN LYS PHE LEU ASP GLY LEU VAL SEQRES 26 A 348 GLU LEU THR GLN GLN ASN LEU LYS THR GLY ASP ILE ALA SEQRES 27 A 348 TYR GLU GLY ILE PRO GLY GLN THR GLN PRO HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 408 1 HET ZN A 409 1 HET ZN A 410 1 HET ZN A 411 1 HET ZN A 412 1 HET ZN A 413 1 HET ZN A 414 1 HET ZN A 415 1 HET CL A 416 1 HET CL A 417 1 HET CL A 418 1 HET CL A 419 1 HET CL A 420 1 HET CL A 421 1 HET CL A 422 1 HET CL A 423 1 HET CL A 424 1 HET 62W A 425 12 HET IMD A 426 5 HET IMD A 427 5 HET IMD A 428 5 HET IMD A 429 5 HET IMD A 430 5 HET ACT A 431 4 HET ACT A 432 4 HET ACT A 433 4 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM 62W L-GLUCITOL HETNAM IMD IMIDAZOLE HETNAM ACT ACETATE ION HETSYN 62W L-SORBITOL; D-GULITOL FORMUL 2 ZN 15(ZN 2+) FORMUL 17 CL 9(CL 1-) FORMUL 26 62W C6 H14 O6 FORMUL 27 IMD 5(C3 H5 N2 1+) FORMUL 32 ACT 3(C2 H3 O2 1-) FORMUL 35 HOH *287(H2 O) HELIX 1 AA1 SER A 45 ASN A 62 1 18 HELIX 2 AA2 ASP A 74 GLN A 88 1 15 HELIX 3 AA3 LEU A 103 LYS A 113 1 11 HELIX 4 AA4 ASP A 136 GLY A 153 1 18 HELIX 5 AA5 GLY A 167 ALA A 182 1 16 HELIX 6 AA6 LYS A 198 GLY A 214 1 17 HELIX 7 AA7 PRO A 215 ILE A 217 5 3 HELIX 8 AA8 ASN A 224 ALA A 238 1 15 HELIX 9 AA9 ILE A 251 SER A 260 1 10 HELIX 10 AB1 ASN A 270 LYS A 287 1 18 HELIX 11 AB2 ASN A 306 VAL A 315 1 10 HELIX 12 AB3 GLU A 317 GLY A 336 1 20 SHEET 1 AA1 6 ILE A 64 SER A 70 0 SHEET 2 AA1 6 LYS A 35 VAL A 41 1 N LYS A 35 O GLU A 65 SHEET 3 AA1 6 ALA A 92 VAL A 96 1 O VAL A 96 N THR A 40 SHEET 4 AA1 6 LEU A 117 VAL A 120 1 O LEU A 118 N VAL A 95 SHEET 5 AA1 6 GLY A 131 PRO A 135 1 O VAL A 133 N ALA A 119 SHEET 6 AA1 6 VAL A 296 TYR A 297 1 O TYR A 297 N GLN A 134 SHEET 1 AA2 4 ILE A 187 THR A 194 0 SHEET 2 AA2 4 GLY A 156 GLN A 162 1 N ILE A 158 O LYS A 188 SHEET 3 AA2 4 GLY A 219 ALA A 222 1 O VAL A 221 N VAL A 159 SHEET 4 AA2 4 ILE A 245 VAL A 246 1 O VAL A 246 N ALA A 222 SHEET 1 AA3 2 THR A 266 SER A 267 0 SHEET 2 AA3 2 ALA A 301 ILE A 302 -1 O ILE A 302 N THR A 266 LINK OD2 ASP A 43 ZN ZN A 413 1555 1555 1.91 LINK OE2 GLU A 50 ZN ZN A 401 1555 1555 1.91 LINK OE2 GLU A 53 ZN ZN A 403 1555 1555 1.94 LINK OD2 ASP A 56 ZN ZN A 408 1555 1555 1.97 LINK OD1 ASP A 74 ZN ZN A 409 1555 1555 2.50 LINK OD2 ASP A 74 ZN ZN A 409 1555 1555 2.18 LINK OG SER A 76 ZN ZN A 409 1555 1555 2.05 LINK OE2 GLU A 125 ZN ZN A 415 1555 1555 1.98 LINK OD2 ASP A 128 ZN ZN A 402 1555 1555 1.89 LINK OD2 ASP A 136 ZN ZN A 405 1555 1555 2.07 LINK OD2 ASP A 150 ZN ZN A 413 1555 4545 1.95 LINK OE1 GLU A 170 ZN ZN A 412 1555 1555 2.01 LINK OD1 ASP A 178 ZN ZN A 402 1555 3555 1.93 LINK OD2 ASP A 186 ZN ZN A 408 1555 4545 1.88 LINK OD1 ASP A 200 ZN ZN A 410 1555 1555 1.94 LINK OD2 ASP A 218 ZN ZN A 404 1555 1555 1.94 LINK OE1 GLU A 237 ZN ZN A 406 1555 1555 2.46 LINK OE2 GLU A 237 ZN ZN A 406 1555 1555 2.27 LINK OE1 GLU A 252 ZN ZN A 401 1555 1555 1.94 LINK OD2AASP A 294 ZN ZN A 411 1555 1555 1.93 LINK OD1 ASP A 337 ZN ZN A 407 1555 1555 2.54 LINK OD2 ASP A 337 ZN ZN A 407 1555 1555 1.83 LINK ZN ZN A 402 O ACT A 431 1555 1555 1.97 LINK ZN ZN A 403 N3 IMD A 427 1555 1555 1.95 LINK ZN ZN A 403 OXT ACT A 432 1555 1555 2.18 LINK ZN ZN A 403 O ACT A 432 1555 1555 2.18 LINK ZN ZN A 403 O HOH A 663 1555 1555 2.20 LINK ZN ZN A 404 OXT ACT A 433 1555 1555 2.22 LINK ZN ZN A 404 O HOH A 735 1555 1555 2.07 LINK ZN ZN A 404 O HOH A 736 1555 1555 2.25 LINK ZN ZN A 405 O HOH A 724 1555 4545 2.23 LINK ZN ZN A 405 O HOH A 741 1555 1555 2.27 LINK ZN ZN A 405 O HOH A 750 1555 1555 2.05 LINK ZN ZN A 406 N1 IMD A 429 1555 1555 2.07 LINK ZN ZN A 406 N1 IMD A 430 1555 1555 2.31 LINK ZN ZN A 407 O HOH A 659 1555 1555 2.14 LINK ZN ZN A 409 O HOH A 503 1555 1555 1.94 LINK ZN ZN A 409 O HOH A 523 1555 2445 2.10 LINK ZN ZN A 409 O HOH A 653 1555 2445 2.19 LINK ZN ZN A 409 O HOH A 690 1555 1555 2.46 LINK ZN ZN A 411 O HOH A 744 1555 1555 2.24 LINK ZN ZN A 411 O HOH A 764 1555 1555 2.54 LINK ZN ZN A 413 N1 IMD A 426 1555 1555 2.05 LINK ZN ZN A 414 N1 IMD A 428 1555 1555 2.08 LINK ZN ZN A 414 O HOH A 535 1555 4545 1.84 LINK ZN ZN A 414 O HOH A 753 1555 1555 2.27 LINK ZN ZN A 415 O HOH A 751 1555 1555 2.24 SITE 1 AC1 4 GLU A 50 GLU A 252 CL A 416 CL A 417 SITE 1 AC2 4 ASP A 128 ASP A 178 CL A 421 ACT A 431 SITE 1 AC3 4 GLU A 53 IMD A 427 ACT A 432 HOH A 663 SITE 1 AC4 4 ASP A 218 ACT A 433 HOH A 735 HOH A 736 SITE 1 AC5 4 ASP A 136 HOH A 724 HOH A 741 HOH A 750 SITE 1 AC6 4 GLU A 237 IMD A 429 IMD A 430 HOH A 713 SITE 1 AC7 3 ASP A 337 THR A 347 HOH A 659 SITE 1 AC8 5 LYS A 52 ASP A 56 ASP A 186 CL A 418 SITE 2 AC8 5 CL A 419 SITE 1 AC9 6 ASP A 74 SER A 76 HOH A 503 HOH A 523 SITE 2 AC9 6 HOH A 653 HOH A 690 SITE 1 AD1 1 ASP A 200 SITE 1 AD2 3 ASP A 294 HOH A 744 HOH A 764 SITE 1 AD3 4 GLU A 170 CL A 420 HOH A 504 HOH A 746 SITE 1 AD4 5 ASP A 43 ASN A 72 ASP A 150 CL A 422 SITE 2 AD4 5 IMD A 426 SITE 1 AD5 6 ASP A 200 CL A 423 CL A 424 IMD A 428 SITE 2 AD5 6 HOH A 535 HOH A 753 SITE 1 AD6 2 GLU A 125 HOH A 751 SITE 1 AD7 5 GLU A 50 ARG A 199 GLU A 252 ASP A 253 SITE 2 AD7 5 ZN A 401 SITE 1 AD8 3 GLU A 50 GLU A 252 ZN A 401 SITE 1 AD9 3 ASP A 56 ASP A 186 ZN A 408 SITE 1 AE1 4 ASP A 56 LYS A 60 ASP A 186 ZN A 408 SITE 1 AE2 4 GLU A 170 ZN A 412 HOH A 504 HOH A 746 SITE 1 AE3 5 ASP A 128 ILE A 160 ASP A 178 ZN A 402 SITE 2 AE3 5 ACT A 431 SITE 1 AE4 8 ASP A 43 ASN A 72 ASN A 73 ASP A 150 SITE 2 AE4 8 LYS A 198 ZN A 413 IMD A 426 IMD A 428 SITE 1 AE5 5 ASP A 200 ZN A 414 CL A 424 IMD A 426 SITE 2 AE5 5 IMD A 428 SITE 1 AE6 5 ZN A 414 CL A 423 IMD A 428 HOH A 535 SITE 2 AE6 5 HOH A 707 SITE 1 AE7 12 TYR A 42 ASN A 121 ALA A 122 ARG A 173 SITE 2 AE7 12 TRP A 197 ASN A 224 ASP A 249 GLN A 269 SITE 3 AE7 12 HOH A 540 HOH A 561 HOH A 602 HOH A 604 SITE 1 AE8 9 ASP A 43 MET A 44 GLN A 146 ASP A 150 SITE 2 AE8 9 ZN A 413 CL A 422 CL A 423 IMD A 428 SITE 3 AE8 9 HOH A 675 SITE 1 AE9 6 GLU A 53 LYS A 183 GLU A 252 ARG A 318 SITE 2 AE9 6 ZN A 403 ACT A 432 SITE 1 AF1 7 ZN A 414 CL A 422 CL A 423 CL A 424 SITE 2 AF1 7 IMD A 426 HOH A 535 HOH A 761 SITE 1 AF2 7 GLU A 237 VAL A 296 ASP A 337 ZN A 406 SITE 2 AF2 7 IMD A 430 HOH A 621 HOH A 713 SITE 1 AF3 4 ASP A 136 GLU A 237 ZN A 406 IMD A 429 SITE 1 AF4 8 LYS A 111 ASP A 128 GLY A 174 ASP A 178 SITE 2 AF4 8 LYS A 192 ZN A 402 CL A 421 HOH A 557 SITE 1 AF5 6 GLU A 53 ARG A 318 GLN A 319 ZN A 403 SITE 2 AF5 6 IMD A 427 HOH A 663 SITE 1 AF6 3 PRO A 215 ASP A 218 ZN A 404 CRYST1 62.947 62.940 73.153 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013670 0.00000