HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-JAN-16 5HLA TITLE E. COLI PBP1B IN COMPLEX WITH ACYL-CEPHALEXIN AND MOENOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PBP1B,MUREIN POLYMERASE; COMPND 5 EC: 2.4.1.129,3.4.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MRCB, PBPF, PONB, B0149, JW0145; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENICILLIN-BINDING PROTEIN, INHIBITOR COMPLEX, TRANSPEPTIDASE, KEYWDS 2 TRANSGLYCOSYLASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.KING,N.C.J.STRYNADKA REVDAT 5 23-OCT-24 5HLA 1 REMARK REVDAT 4 27-SEP-23 5HLA 1 REMARK REVDAT 3 20-NOV-19 5HLA 1 REMARK REVDAT 2 20-SEP-17 5HLA 1 REMARK REVDAT 1 14-DEC-16 5HLA 0 JRNL AUTH D.T.KING,G.A.WASNEY,M.NOSELLA,A.FONG,N.C.STRYNADKA JRNL TITL ESCHERICHIA COLI PENICILLIN-BINDING PROTEIN 1B: STRUCTURAL JRNL TITL 2 INSIGHTS INTO INHIBITION. JRNL REF J. BIOL. CHEM. 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27899450 JRNL DOI 10.1074/JBC.M116.718403 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 49337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2448 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3627 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2574 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3439 REMARK 3 BIN R VALUE (WORKING SET) : 0.2576 REMARK 3 BIN FREE R VALUE : 0.2547 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.51390 REMARK 3 B22 (A**2) : 13.66220 REMARK 3 B33 (A**2) : -20.17610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.406 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.269 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.201 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.265 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.201 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.855 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5675 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7710 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1956 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 146 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 807 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5675 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 749 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6315 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 63.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS CONTAINED 1UL OF PROTEIN REMARK 280 SOLUTION (20MG/ML PROTEIN, 100UM MOENOMYCIN AND 2MM CEPHALEXIN) REMARK 280 MIXED WITH AN EQUAL VOLUME OF PRECIPITANT (20% W/V PEG 3350, REMARK 280 0.2M POTASSIUM/SODIUM TARTATE, 0.1M BIS TRIS PH 8.5)., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 148.81000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 58 REMARK 465 PRO A 59 REMARK 465 ARG A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 ARG A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 LEU A 66 REMARK 465 HIS A 240 REMARK 465 ASP A 241 REMARK 465 GLY A 242 REMARK 465 ILE A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 465 TYR A 246 REMARK 465 SER A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 VAL A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 ASN A 255 REMARK 465 LEU A 256 REMARK 465 THR A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 ARG A 260 REMARK 465 THR A 261 REMARK 465 VAL A 262 REMARK 465 GLN A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 465 SER A 280 REMARK 465 GLU A 281 REMARK 465 ARG A 282 REMARK 465 SER A 283 REMARK 465 TYR A 284 REMARK 465 TRP A 285 REMARK 465 ARG A 286 REMARK 465 GLY A 400 REMARK 465 VAL A 401 REMARK 465 GLN A 800 REMARK 465 GLN A 801 REMARK 465 GLN A 802 REMARK 465 PRO A 803 REMARK 465 SER A 804 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 510 O 63U A 901 2.05 REMARK 500 O THR A 267 OE1 GLN A 271 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 140 -52.97 -141.58 REMARK 500 PRO A 217 -179.17 -69.78 REMARK 500 GLU A 233 -85.38 -114.27 REMARK 500 PHE A 237 6.44 -169.53 REMARK 500 PHE A 335 -60.74 -122.64 REMARK 500 GLN A 388 4.74 -60.35 REMARK 500 ARG A 404 6.08 55.72 REMARK 500 VAL A 430 -131.45 45.58 REMARK 500 LYS A 431 -31.39 -10.30 REMARK 500 ASP A 469 45.64 -147.84 REMARK 500 ASN A 544 -52.34 -134.48 REMARK 500 ASP A 714 -169.26 -102.09 REMARK 500 PRO A 760 -163.02 -77.57 REMARK 500 PRO A 790 -5.81 -49.08 REMARK 500 GLN A 791 49.34 -72.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1205 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1206 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1207 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1208 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1209 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1212 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1213 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A1214 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A1215 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH A1217 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A1218 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 8.59 ANGSTROMS REMARK 525 HOH A1220 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A1221 DISTANCE = 9.96 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 M0E A 902 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 63U A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M0E A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HL9 RELATED DB: PDB REMARK 900 RELATED ID: 5HLB RELATED DB: PDB REMARK 900 RELATED ID: 5HLD RELATED DB: PDB DBREF 5HLA A 58 804 UNP P02919 PBPB_ECOLI 58 804 SEQRES 1 A 747 LYS PRO ARG GLY LYS ARG GLY TRP LEU TRP LEU LEU LEU SEQRES 2 A 747 LYS LEU ALA ILE VAL PHE ALA VAL LEU ILE ALA ILE TYR SEQRES 3 A 747 GLY VAL TYR LEU ASP GLN LYS ILE ARG SER ARG ILE ASP SEQRES 4 A 747 GLY LYS VAL TRP GLN LEU PRO ALA ALA VAL TYR GLY ARG SEQRES 5 A 747 MET VAL ASN LEU GLU PRO ASP MET THR ILE SER LYS ASN SEQRES 6 A 747 GLU MET VAL LYS LEU LEU GLU ALA THR GLN TYR ARG GLN SEQRES 7 A 747 VAL SER LYS MET THR ARG PRO GLY GLU PHE THR VAL GLN SEQRES 8 A 747 ALA ASN SER ILE GLU MET ILE ARG ARG PRO PHE ASP PHE SEQRES 9 A 747 PRO ASP SER LYS GLU GLY GLN VAL ARG ALA ARG LEU THR SEQRES 10 A 747 PHE ASP GLY ASP HIS LEU ALA THR ILE VAL ASN MET GLU SEQRES 11 A 747 ASN ASN ARG GLN PHE GLY PHE PHE ARG LEU ASP PRO ARG SEQRES 12 A 747 LEU ILE THR MET ILE SER SER PRO ASN GLY GLU GLN ARG SEQRES 13 A 747 LEU PHE VAL PRO ARG SER GLY PHE PRO ASP LEU LEU VAL SEQRES 14 A 747 ASP THR LEU LEU ALA THR GLU ASP ARG HIS PHE TYR GLU SEQRES 15 A 747 HIS ASP GLY ILE SER LEU TYR SER ILE GLY ARG ALA VAL SEQRES 16 A 747 LEU ALA ASN LEU THR ALA GLY ARG THR VAL GLN GLY ALA SEQRES 17 A 747 SER THR LEU THR GLN GLN LEU VAL LYS ASN LEU PHE LEU SEQRES 18 A 747 SER SER GLU ARG SER TYR TRP ARG LYS ALA ASN GLU ALA SEQRES 19 A 747 TYR MET ALA LEU ILE MET ASP ALA ARG TYR SER LYS ASP SEQRES 20 A 747 ARG ILE LEU GLU LEU TYR MET ASN GLU VAL TYR LEU GLY SEQRES 21 A 747 GLN SER GLY ASP ASN GLU ILE ARG GLY PHE PRO LEU ALA SEQRES 22 A 747 SER LEU TYR TYR PHE GLY ARG PRO VAL GLU GLU LEU SER SEQRES 23 A 747 LEU ASP GLN GLN ALA LEU LEU VAL GLY MET VAL LYS GLY SEQRES 24 A 747 ALA SER ILE TYR ASN PRO TRP ARG ASN PRO LYS LEU ALA SEQRES 25 A 747 LEU GLU ARG ARG ASN LEU VAL LEU ARG LEU LEU GLN GLN SEQRES 26 A 747 GLN GLN ILE ILE ASP GLN GLU LEU TYR ASP MET LEU SER SEQRES 27 A 747 ALA ARG PRO LEU GLY VAL GLN PRO ARG GLY GLY VAL ILE SEQRES 28 A 747 SER PRO GLN PRO ALA PHE MET GLN LEU VAL ARG GLN GLU SEQRES 29 A 747 LEU GLN ALA LYS LEU GLY ASP LYS VAL LYS ASP LEU SER SEQRES 30 A 747 GLY VAL LYS ILE PHE THR THR PHE ASP SER VAL ALA GLN SEQRES 31 A 747 ASP ALA ALA GLU LYS ALA ALA VAL GLU GLY ILE PRO ALA SEQRES 32 A 747 LEU LYS LYS GLN ARG LYS LEU SER ASP LEU GLU THR ALA SEQRES 33 A 747 ILE VAL VAL VAL ASP ARG PHE SER GLY GLU VAL ARG ALA SEQRES 34 A 747 MET VAL GLY GLY SER GLU PRO GLN PHE ALA GLY TYR ASN SEQRES 35 A 747 ARG ALA MET GLN ALA ARG ARG SER ILE GLY SER LEU ALA SEQRES 36 A 747 LYS PRO ALA THR TYR LEU THR ALA LEU SER GLN PRO LYS SEQRES 37 A 747 ILE TYR ARG LEU ASN THR TRP ILE ALA ASP ALA PRO ILE SEQRES 38 A 747 ALA LEU ARG GLN PRO ASN GLY GLN VAL TRP SER PRO GLN SEQRES 39 A 747 ASN ASP ASP ARG ARG TYR SER GLU SER GLY ARG VAL MET SEQRES 40 A 747 LEU VAL ASP ALA LEU THR ARG SER MET ASN VAL PRO THR SEQRES 41 A 747 VAL ASN LEU GLY MET ALA LEU GLY LEU PRO ALA VAL THR SEQRES 42 A 747 GLU THR TRP ILE LYS LEU GLY VAL PRO LYS ASP GLN LEU SEQRES 43 A 747 HIS PRO VAL PRO ALA MET LEU LEU GLY ALA LEU ASN LEU SEQRES 44 A 747 THR PRO ILE GLU VAL ALA GLN ALA PHE GLN THR ILE ALA SEQRES 45 A 747 SER GLY GLY ASN ARG ALA PRO LEU SER ALA LEU ARG SER SEQRES 46 A 747 VAL ILE ALA GLU ASP GLY LYS VAL LEU TYR GLN SER PHE SEQRES 47 A 747 PRO GLN ALA GLU ARG ALA VAL PRO ALA GLN ALA ALA TYR SEQRES 48 A 747 LEU THR LEU TRP THR MET GLN GLN VAL VAL GLN ARG GLY SEQRES 49 A 747 THR GLY ARG GLN LEU GLY ALA LYS TYR PRO ASN LEU HIS SEQRES 50 A 747 LEU ALA GLY LYS THR GLY THR THR ASN ASN ASN VAL ASP SEQRES 51 A 747 THR TRP PHE ALA GLY ILE ASP GLY SER THR VAL THR ILE SEQRES 52 A 747 THR TRP VAL GLY ARG ASP ASN ASN GLN PRO THR LYS LEU SEQRES 53 A 747 TYR GLY ALA SER GLY ALA MET SER ILE TYR GLN ARG TYR SEQRES 54 A 747 LEU ALA ASN GLN THR PRO THR PRO LEU ASN LEU VAL PRO SEQRES 55 A 747 PRO GLU ASP ILE ALA ASP MET GLY VAL ASP TYR ASP GLY SEQRES 56 A 747 ASN PHE VAL CYS SER GLY GLY MET ARG ILE LEU PRO VAL SEQRES 57 A 747 TRP THR SER ASP PRO GLN SER LEU CYS GLN GLN SER GLU SEQRES 58 A 747 MET GLN GLN GLN PRO SER HET 63U A 901 24 HET M0E A 902 71 HETNAM 63U (2S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2- HETNAM 2 63U OXOETHYL]-5-METHYL-3,6-DIHYDRO-2H-1,3-THIAZINE-4- HETNAM 3 63U CARBOXYLIC ACID HETNAM M0E MOENOMYCIN HETSYN M0E MOENOMYCIN FORMUL 2 63U C16 H19 N3 O4 S FORMUL 3 M0E C69 H106 N5 O34 P FORMUL 4 HOH *221(H2 O) HELIX 1 AA1 LEU A 69 ASP A 96 1 28 HELIX 2 AA2 SER A 120 ALA A 130 1 11 HELIX 3 AA3 PRO A 222 GLU A 233 1 12 HELIX 4 AA4 LEU A 268 PHE A 277 1 10 HELIX 5 AA5 ALA A 288 TYR A 301 1 14 HELIX 6 AA6 SER A 302 MET A 311 1 10 HELIX 7 AA7 GLY A 326 PHE A 335 1 10 HELIX 8 AA8 PRO A 338 LEU A 342 5 5 HELIX 9 AA9 SER A 343 MET A 353 1 11 HELIX 10 AB1 VAL A 354 GLY A 356 5 3 HELIX 11 AB2 ASN A 365 GLN A 381 1 17 HELIX 12 AB3 LEU A 390 SER A 395 1 6 HELIX 13 AB4 GLN A 411 GLY A 427 1 17 HELIX 14 AB5 ASP A 443 LYS A 466 1 24 HELIX 15 AB6 GLY A 509 LEU A 511 5 3 HELIX 16 AB7 ALA A 512 LEU A 521 1 10 HELIX 17 AB8 LEU A 565 ARG A 571 1 7 HELIX 18 AB9 MET A 573 GLY A 585 1 13 HELIX 19 AC1 GLY A 585 GLY A 597 1 13 HELIX 20 AC2 PRO A 599 LEU A 603 5 5 HELIX 21 AC3 VAL A 606 GLY A 612 5 7 HELIX 22 AC4 THR A 617 SER A 630 1 14 HELIX 23 AC5 PRO A 663 ARG A 680 1 18 HELIX 24 AC6 GLY A 683 ALA A 688 1 6 HELIX 25 AC7 TYR A 690 HIS A 694 5 5 HELIX 26 AC8 ASN A 703 ASN A 705 5 3 HELIX 27 AC9 GLY A 738 ASN A 749 1 12 HELIX 28 AD1 SER A 792 GLU A 798 1 7 SHEET 1 AA1 5 LEU A 201 ILE A 205 0 SHEET 2 AA1 5 ALA A 104 TYR A 107 -1 N VAL A 106 O THR A 203 SHEET 3 AA1 5 LYS A 437 THR A 440 1 O ILE A 438 N ALA A 105 SHEET 4 AA1 5 LEU A 640 ILE A 644 -1 O ILE A 644 N LYS A 437 SHEET 5 AA1 5 VAL A 650 GLN A 653 -1 O TYR A 652 N VAL A 643 SHEET 1 AA2 2 ASN A 112 LEU A 113 0 SHEET 2 AA2 2 PHE A 195 ARG A 196 -1 O PHE A 195 N LEU A 113 SHEET 1 AA3 6 ARG A 134 GLN A 135 0 SHEET 2 AA3 6 GLU A 144 VAL A 147 1 O PHE A 145 N ARG A 134 SHEET 3 AA3 6 SER A 151 ARG A 156 -1 O GLU A 153 N THR A 146 SHEET 4 AA3 6 VAL A 169 ASP A 176 -1 O LEU A 173 N ILE A 152 SHEET 5 AA3 6 HIS A 179 ASN A 185 -1 O HIS A 179 N ASP A 176 SHEET 6 AA3 6 ARG A 190 GLN A 191 -1 O ARG A 190 N ASN A 185 SHEET 1 AA4 2 PHE A 159 ASP A 160 0 SHEET 2 AA4 2 LYS A 165 GLU A 166 -1 O GLU A 166 N PHE A 159 SHEET 1 AA5 3 GLU A 211 GLN A 212 0 SHEET 2 AA5 3 ASN A 322 ARG A 325 1 O GLU A 323 N GLN A 212 SHEET 3 AA5 3 TYR A 315 SER A 319 -1 N GLY A 317 O ILE A 324 SHEET 1 AA6 5 VAL A 484 VAL A 488 0 SHEET 2 AA6 5 GLU A 471 ASP A 478 -1 N ILE A 474 O VAL A 488 SHEET 3 AA6 5 THR A 717 GLY A 724 -1 O TRP A 722 N ALA A 473 SHEET 4 AA6 5 ASP A 707 ILE A 713 -1 N GLY A 712 O THR A 719 SHEET 5 AA6 5 ALA A 696 THR A 701 -1 N GLY A 700 O TRP A 709 SHEET 1 AA7 2 ARG A 506 SER A 507 0 SHEET 2 AA7 2 ASN A 615 LEU A 616 -1 O LEU A 616 N ARG A 506 SHEET 1 AA8 2 TRP A 532 ALA A 534 0 SHEET 2 AA8 2 ARG A 562 MET A 564 -1 O VAL A 563 N ILE A 533 SHEET 1 AA9 2 LEU A 540 ARG A 541 0 SHEET 2 AA9 2 VAL A 547 TRP A 548 -1 O TRP A 548 N LEU A 540 SHEET 1 AB1 2 ASN A 633 ARG A 634 0 SHEET 2 AB1 2 GLU A 659 ARG A 660 -1 O GLU A 659 N ARG A 634 SHEET 1 AB2 3 PHE A 774 VAL A 775 0 SHEET 2 AB2 3 ILE A 763 VAL A 768 -1 N GLY A 767 O VAL A 775 SHEET 3 AB2 3 ARG A 781 TRP A 786 -1 O VAL A 785 N ALA A 764 LINK OG SER A 510 C 63U A 901 1555 1555 1.27 CISPEP 1 LYS A 429 VAL A 430 0 3.51 CISPEP 2 ASN A 544 GLY A 545 0 3.04 SITE 1 AC1 11 SER A 510 LYS A 513 ASP A 553 SER A 572 SITE 2 AC1 11 ASN A 574 THR A 682 THR A 699 GLY A 700 SITE 3 AC1 11 THR A 701 ASN A 703 HOH A1025 SITE 1 AC2 12 GLU A 233 GLN A 271 LYS A 274 ASN A 275 SITE 2 AC2 12 TYR A 315 GLU A 323 VAL A 354 LYS A 355 SITE 3 AC2 12 GLY A 356 ALA A 357 SER A 358 ILE A 359 CRYST1 62.700 63.760 297.620 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003360 0.00000