HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-JAN-16 5HLD TITLE E. COLI PBP1B IN COMPLEX WITH ACYL-CENTA AND MOENOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PBP1B,MUREIN POLYMERASE; COMPND 5 EC: 2.4.1.129,3.4.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MRCB, PBPF, PONB, B0149, JW0145; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENICILLIN-BINDING PROTEIN, INHIBITOR COMPLEX, TRANSPEPTIDASE, KEYWDS 2 TRANSGLYCOSYLASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.KING,N.C.J.STRYNADKA REVDAT 5 20-NOV-24 5HLD 1 REMARK REVDAT 4 27-SEP-23 5HLD 1 REMARK REVDAT 3 20-NOV-19 5HLD 1 REMARK REVDAT 2 20-SEP-17 5HLD 1 REMARK REVDAT 1 14-DEC-16 5HLD 0 JRNL AUTH D.T.KING,G.A.WASNEY,M.NOSELLA,A.FONG,N.C.STRYNADKA JRNL TITL ESCHERICHIA COLI PENICILLIN-BINDING PROTEIN 1B: STRUCTURAL JRNL TITL 2 INSIGHTS INTO INHIBITION. JRNL REF J. BIOL. CHEM. 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27899450 JRNL DOI 10.1074/JBC.M116.718403 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 48242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2384 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.25 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3265 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2637 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3096 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.2936 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 169 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.22370 REMARK 3 B22 (A**2) : 14.03140 REMARK 3 B33 (A**2) : -22.25510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.464 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.272 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.220 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.269 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.221 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.833 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.804 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5262 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7145 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1827 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 749 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5262 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 696 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5843 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48263 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 62.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS CONTAINED 1UL OF PROTEIN REMARK 280 SOLUTION (20MG/ML PROTEIN, 100UM MOENOMYCIN AND 2MM CENTA) MIXED REMARK 280 WITH AN EQUAL VOLUME OF PRECIPITANT (20% W/V PEG 3350, 0.2M REMARK 280 POTASSIUM/SODIUM TARTATE, 0.1M BIS TRIS PH 8.5), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 147.31500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 58 REMARK 465 PRO A 59 REMARK 465 ARG A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 ARG A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 LEU A 66 REMARK 465 TRP A 67 REMARK 465 LEU A 68 REMARK 465 LEU A 69 REMARK 465 LEU A 70 REMARK 465 LYS A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 234 REMARK 465 ARG A 235 REMARK 465 HIS A 236 REMARK 465 PHE A 237 REMARK 465 TYR A 238 REMARK 465 GLU A 239 REMARK 465 HIS A 240 REMARK 465 ASP A 241 REMARK 465 GLY A 242 REMARK 465 ILE A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 465 TYR A 246 REMARK 465 SER A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 VAL A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 ASN A 255 REMARK 465 LEU A 256 REMARK 465 THR A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 ARG A 260 REMARK 465 THR A 261 REMARK 465 VAL A 262 REMARK 465 GLN A 263 REMARK 465 GLY A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 465 THR A 267 REMARK 465 LEU A 268 REMARK 465 SER A 280 REMARK 465 GLU A 281 REMARK 465 ARG A 282 REMARK 465 SER A 283 REMARK 465 TYR A 284 REMARK 465 TRP A 285 REMARK 465 ARG A 286 REMARK 465 LYS A 355 REMARK 465 GLY A 356 REMARK 465 ALA A 357 REMARK 465 SER A 358 REMARK 465 ILE A 359 REMARK 465 TYR A 360 REMARK 465 ASN A 361 REMARK 465 PRO A 362 REMARK 465 TRP A 363 REMARK 465 ARG A 364 REMARK 465 ASN A 365 REMARK 465 PRO A 366 REMARK 465 LYS A 367 REMARK 465 GLN A 381 REMARK 465 GLN A 382 REMARK 465 GLN A 383 REMARK 465 GLN A 384 REMARK 465 ILE A 385 REMARK 465 ILE A 386 REMARK 465 ASP A 387 REMARK 465 GLN A 388 REMARK 465 GLU A 389 REMARK 465 LEU A 390 REMARK 465 PRO A 398 REMARK 465 LEU A 399 REMARK 465 GLY A 400 REMARK 465 VAL A 401 REMARK 465 GLN A 402 REMARK 465 PRO A 403 REMARK 465 ARG A 404 REMARK 465 GLY A 405 REMARK 465 GLY A 406 REMARK 465 VAL A 407 REMARK 465 ILE A 408 REMARK 465 SER A 409 REMARK 465 MET A 799 REMARK 465 GLN A 800 REMARK 465 GLN A 801 REMARK 465 GLN A 802 REMARK 465 PRO A 803 REMARK 465 SER A 804 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 510 O 63V A 901 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 181 -61.44 -93.55 REMARK 500 SER A 206 114.33 -33.61 REMARK 500 ILE A 526 -38.73 -130.09 REMARK 500 ASP A 714 -165.93 -108.13 REMARK 500 PRO A 790 -0.65 -56.57 REMARK 500 GLN A 791 34.83 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1178 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1179 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1181 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1184 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A1187 DISTANCE = 8.71 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 M0E A 902 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 63V A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M0E A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HL9 RELATED DB: PDB REMARK 900 RELATED ID: 5HLA RELATED DB: PDB REMARK 900 RELATED ID: 5HLB RELATED DB: PDB DBREF 5HLD A 58 804 UNP P02919 PBPB_ECOLI 58 804 SEQRES 1 A 747 LYS PRO ARG GLY LYS ARG GLY TRP LEU TRP LEU LEU LEU SEQRES 2 A 747 LYS LEU ALA ILE VAL PHE ALA VAL LEU ILE ALA ILE TYR SEQRES 3 A 747 GLY VAL TYR LEU ASP GLN LYS ILE ARG SER ARG ILE ASP SEQRES 4 A 747 GLY LYS VAL TRP GLN LEU PRO ALA ALA VAL TYR GLY ARG SEQRES 5 A 747 MET VAL ASN LEU GLU PRO ASP MET THR ILE SER LYS ASN SEQRES 6 A 747 GLU MET VAL LYS LEU LEU GLU ALA THR GLN TYR ARG GLN SEQRES 7 A 747 VAL SER LYS MET THR ARG PRO GLY GLU PHE THR VAL GLN SEQRES 8 A 747 ALA ASN SER ILE GLU MET ILE ARG ARG PRO PHE ASP PHE SEQRES 9 A 747 PRO ASP SER LYS GLU GLY GLN VAL ARG ALA ARG LEU THR SEQRES 10 A 747 PHE ASP GLY ASP HIS LEU ALA THR ILE VAL ASN MET GLU SEQRES 11 A 747 ASN ASN ARG GLN PHE GLY PHE PHE ARG LEU ASP PRO ARG SEQRES 12 A 747 LEU ILE THR MET ILE SER SER PRO ASN GLY GLU GLN ARG SEQRES 13 A 747 LEU PHE VAL PRO ARG SER GLY PHE PRO ASP LEU LEU VAL SEQRES 14 A 747 ASP THR LEU LEU ALA THR GLU ASP ARG HIS PHE TYR GLU SEQRES 15 A 747 HIS ASP GLY ILE SER LEU TYR SER ILE GLY ARG ALA VAL SEQRES 16 A 747 LEU ALA ASN LEU THR ALA GLY ARG THR VAL GLN GLY ALA SEQRES 17 A 747 SER THR LEU THR GLN GLN LEU VAL LYS ASN LEU PHE LEU SEQRES 18 A 747 SER SER GLU ARG SER TYR TRP ARG LYS ALA ASN GLU ALA SEQRES 19 A 747 TYR MET ALA LEU ILE MET ASP ALA ARG TYR SER LYS ASP SEQRES 20 A 747 ARG ILE LEU GLU LEU TYR MET ASN GLU VAL TYR LEU GLY SEQRES 21 A 747 GLN SER GLY ASP ASN GLU ILE ARG GLY PHE PRO LEU ALA SEQRES 22 A 747 SER LEU TYR TYR PHE GLY ARG PRO VAL GLU GLU LEU SER SEQRES 23 A 747 LEU ASP GLN GLN ALA LEU LEU VAL GLY MET VAL LYS GLY SEQRES 24 A 747 ALA SER ILE TYR ASN PRO TRP ARG ASN PRO LYS LEU ALA SEQRES 25 A 747 LEU GLU ARG ARG ASN LEU VAL LEU ARG LEU LEU GLN GLN SEQRES 26 A 747 GLN GLN ILE ILE ASP GLN GLU LEU TYR ASP MET LEU SER SEQRES 27 A 747 ALA ARG PRO LEU GLY VAL GLN PRO ARG GLY GLY VAL ILE SEQRES 28 A 747 SER PRO GLN PRO ALA PHE MET GLN LEU VAL ARG GLN GLU SEQRES 29 A 747 LEU GLN ALA LYS LEU GLY ASP LYS VAL LYS ASP LEU SER SEQRES 30 A 747 GLY VAL LYS ILE PHE THR THR PHE ASP SER VAL ALA GLN SEQRES 31 A 747 ASP ALA ALA GLU LYS ALA ALA VAL GLU GLY ILE PRO ALA SEQRES 32 A 747 LEU LYS LYS GLN ARG LYS LEU SER ASP LEU GLU THR ALA SEQRES 33 A 747 ILE VAL VAL VAL ASP ARG PHE SER GLY GLU VAL ARG ALA SEQRES 34 A 747 MET VAL GLY GLY SER GLU PRO GLN PHE ALA GLY TYR ASN SEQRES 35 A 747 ARG ALA MET GLN ALA ARG ARG SER ILE GLY SER LEU ALA SEQRES 36 A 747 LYS PRO ALA THR TYR LEU THR ALA LEU SER GLN PRO LYS SEQRES 37 A 747 ILE TYR ARG LEU ASN THR TRP ILE ALA ASP ALA PRO ILE SEQRES 38 A 747 ALA LEU ARG GLN PRO ASN GLY GLN VAL TRP SER PRO GLN SEQRES 39 A 747 ASN ASP ASP ARG ARG TYR SER GLU SER GLY ARG VAL MET SEQRES 40 A 747 LEU VAL ASP ALA LEU THR ARG SER MET ASN VAL PRO THR SEQRES 41 A 747 VAL ASN LEU GLY MET ALA LEU GLY LEU PRO ALA VAL THR SEQRES 42 A 747 GLU THR TRP ILE LYS LEU GLY VAL PRO LYS ASP GLN LEU SEQRES 43 A 747 HIS PRO VAL PRO ALA MET LEU LEU GLY ALA LEU ASN LEU SEQRES 44 A 747 THR PRO ILE GLU VAL ALA GLN ALA PHE GLN THR ILE ALA SEQRES 45 A 747 SER GLY GLY ASN ARG ALA PRO LEU SER ALA LEU ARG SER SEQRES 46 A 747 VAL ILE ALA GLU ASP GLY LYS VAL LEU TYR GLN SER PHE SEQRES 47 A 747 PRO GLN ALA GLU ARG ALA VAL PRO ALA GLN ALA ALA TYR SEQRES 48 A 747 LEU THR LEU TRP THR MET GLN GLN VAL VAL GLN ARG GLY SEQRES 49 A 747 THR GLY ARG GLN LEU GLY ALA LYS TYR PRO ASN LEU HIS SEQRES 50 A 747 LEU ALA GLY LYS THR GLY THR THR ASN ASN ASN VAL ASP SEQRES 51 A 747 THR TRP PHE ALA GLY ILE ASP GLY SER THR VAL THR ILE SEQRES 52 A 747 THR TRP VAL GLY ARG ASP ASN ASN GLN PRO THR LYS LEU SEQRES 53 A 747 TYR GLY ALA SER GLY ALA MET SER ILE TYR GLN ARG TYR SEQRES 54 A 747 LEU ALA ASN GLN THR PRO THR PRO LEU ASN LEU VAL PRO SEQRES 55 A 747 PRO GLU ASP ILE ALA ASP MET GLY VAL ASP TYR ASP GLY SEQRES 56 A 747 ASN PHE VAL CYS SER GLY GLY MET ARG ILE LEU PRO VAL SEQRES 57 A 747 TRP THR SER ASP PRO GLN SER LEU CYS GLN GLN SER GLU SEQRES 58 A 747 MET GLN GLN GLN PRO SER HET 63V A 901 22 HET M0E A 902 77 HETNAM 63V (2S)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(THIOPHEN-2- HETNAM 2 63V YLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4- HETNAM 3 63V CARBOXYLIC ACID HETNAM M0E MOENOMYCIN HETSYN M0E MOENOMYCIN FORMUL 2 63V C14 H14 N2 O4 S2 FORMUL 3 M0E C69 H106 N5 O34 P FORMUL 4 HOH *187(H2 O) HELIX 1 AA1 VAL A 75 GLN A 89 1 15 HELIX 2 AA2 GLN A 89 ASP A 96 1 8 HELIX 3 AA3 SER A 120 THR A 131 1 12 HELIX 4 AA4 PRO A 217 PHE A 221 5 5 HELIX 5 AA5 PRO A 222 LEU A 230 1 9 HELIX 6 AA6 GLN A 270 LEU A 278 1 9 HELIX 7 AA7 ALA A 288 TYR A 301 1 14 HELIX 8 AA8 SER A 302 MET A 311 1 10 HELIX 9 AA9 GLY A 326 PHE A 335 1 10 HELIX 10 AB1 PRO A 338 LEU A 342 5 5 HELIX 11 AB2 SER A 343 MET A 353 1 11 HELIX 12 AB3 ALA A 369 LEU A 380 1 12 HELIX 13 AB4 GLN A 411 LEU A 426 1 16 HELIX 14 AB5 ASP A 443 ARG A 465 1 23 HELIX 15 AB6 ASN A 499 ALA A 504 1 6 HELIX 16 AB7 GLY A 509 LEU A 511 5 3 HELIX 17 AB8 ALA A 512 SER A 522 1 11 HELIX 18 AB9 LEU A 565 SER A 572 1 8 HELIX 19 AC1 MET A 573 GLY A 585 1 13 HELIX 20 AC2 GLY A 585 GLY A 597 1 13 HELIX 21 AC3 PRO A 599 LEU A 603 5 5 HELIX 22 AC4 VAL A 606 LEU A 610 5 5 HELIX 23 AC5 THR A 617 SER A 630 1 14 HELIX 24 AC6 PRO A 663 ARG A 680 1 18 HELIX 25 AC7 GLY A 683 TYR A 690 1 8 HELIX 26 AC8 PRO A 691 HIS A 694 5 4 HELIX 27 AC9 ASN A 703 ASN A 705 5 3 HELIX 28 AD1 GLY A 738 ASN A 749 1 12 HELIX 29 AD2 GLN A 791 GLU A 798 1 8 SHEET 1 AA1 5 LEU A 201 MET A 204 0 SHEET 2 AA1 5 ALA A 105 TYR A 107 -1 N VAL A 106 O THR A 203 SHEET 3 AA1 5 LYS A 437 THR A 440 1 O ILE A 438 N TYR A 107 SHEET 4 AA1 5 LEU A 640 ILE A 644 -1 O ILE A 644 N LYS A 437 SHEET 5 AA1 5 VAL A 650 GLN A 653 -1 O TYR A 652 N VAL A 643 SHEET 1 AA2 2 ASN A 112 LEU A 113 0 SHEET 2 AA2 2 PHE A 195 ARG A 196 -1 O PHE A 195 N LEU A 113 SHEET 1 AA3 6 ARG A 134 GLN A 135 0 SHEET 2 AA3 6 GLU A 144 VAL A 147 1 O PHE A 145 N ARG A 134 SHEET 3 AA3 6 SER A 151 ARG A 156 -1 O GLU A 153 N THR A 146 SHEET 4 AA3 6 VAL A 169 ASP A 176 -1 O ALA A 171 N MET A 154 SHEET 5 AA3 6 HIS A 179 ASN A 185 -1 O ALA A 181 N THR A 174 SHEET 6 AA3 6 ARG A 190 GLN A 191 -1 O ARG A 190 N ASN A 185 SHEET 1 AA4 3 GLU A 211 GLN A 212 0 SHEET 2 AA4 3 ASN A 322 ARG A 325 1 O GLU A 323 N GLN A 212 SHEET 3 AA4 3 TYR A 315 SER A 319 -1 N GLY A 317 O ILE A 324 SHEET 1 AA5 5 VAL A 484 VAL A 488 0 SHEET 2 AA5 5 GLU A 471 ASP A 478 -1 N ILE A 474 O VAL A 488 SHEET 3 AA5 5 THR A 717 GLY A 724 -1 O VAL A 718 N VAL A 477 SHEET 4 AA5 5 ASP A 707 ILE A 713 -1 N GLY A 712 O THR A 719 SHEET 5 AA5 5 THR A 699 THR A 701 -1 N GLY A 700 O TRP A 709 SHEET 1 AA6 2 ARG A 506 SER A 507 0 SHEET 2 AA6 2 ASN A 615 LEU A 616 -1 O LEU A 616 N ARG A 506 SHEET 1 AA7 2 TRP A 532 ALA A 534 0 SHEET 2 AA7 2 ARG A 562 MET A 564 -1 O VAL A 563 N ILE A 533 SHEET 1 AA8 2 LEU A 540 ARG A 541 0 SHEET 2 AA8 2 VAL A 547 TRP A 548 -1 O TRP A 548 N LEU A 540 SHEET 1 AA9 2 ASN A 633 ARG A 634 0 SHEET 2 AA9 2 GLU A 659 ARG A 660 -1 O GLU A 659 N ARG A 634 SHEET 1 AB1 3 PHE A 774 VAL A 775 0 SHEET 2 AB1 3 ILE A 763 VAL A 768 -1 N GLY A 767 O VAL A 775 SHEET 3 AB1 3 ARG A 781 TRP A 786 -1 O LEU A 783 N MET A 766 LINK OG SER A 510 C 63V A 901 1555 1555 1.45 CISPEP 1 LEU A 230 ALA A 231 0 -1.26 CISPEP 2 ALA A 231 THR A 232 0 4.44 CISPEP 3 PRO A 543 ASN A 544 0 4.92 SITE 1 AC1 10 SER A 510 ASP A 553 SER A 572 ASN A 574 SITE 2 AC1 10 THR A 682 THR A 699 THR A 701 THR A 702 SITE 3 AC1 10 ASN A 703 HOH A1062 SITE 1 AC2 7 GLU A 233 GLN A 271 LYS A 274 ASN A 275 SITE 2 AC2 7 TYR A 315 GLU A 323 HOH A1080 CRYST1 62.340 63.940 294.630 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003394 0.00000