HEADER LIGASE/LIGASE INHIBITOR 15-JAN-16 5HM3 TITLE 2.25 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF LONG-CHAIN-FATTY-ACID- TITLE 2 AMP LIGASE FADD32 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH TITLE 3 INHIBITOR 5'-O-[(11-PHENOXYUNDECANOYL)SULFAMOYL]ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LONG-CHAIN-FATTY-ACID--AMP LIGASE FADD32; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAAL,ACYL-AMP SYNTHETASE; COMPND 5 EC: 6.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: FADD32, RV3801C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LONG-CHAIN-FATTY-ACID--AMP LIGASE, FADD32, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WARWRZAK,M.L.KUHN,L.SHUVALOVA,K.J.FLORES,D.J.WILSON, AUTHOR 2 K.D.GRIMES,C.C.ALDRICH,W.A.ANDERSON,CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 OF INFECTIOUS DISEASES (CSGID) REVDAT 2 07-SEP-16 5HM3 1 JRNL REVDAT 1 03-AUG-16 5HM3 0 JRNL AUTH M.L.KUHN,E.ALEXANDER,G.MINASOV,H.J.PAGE,Z.WARWRZAK, JRNL AUTH 2 L.SHUVALOVA,K.J.FLORES,D.J.WILSON,C.SHI,C.C.ALDRICH, JRNL AUTH 3 W.F.ANDERSON JRNL TITL STRUCTURE OF THE ESSENTIAL MTB FADD32 ENZYME: A PROMISING JRNL TITL 2 DRUG TARGET FOR TREATING TUBERCULOSIS. JRNL REF ACS INFECT DIS. V. 2 579 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27547819 JRNL DOI 10.1021/ACSINFECDIS.6B00082 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 2.45000 REMARK 3 B33 (A**2) : -2.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.376 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.796 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5230 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4922 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7138 ; 1.521 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11295 ; 0.731 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 2.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;24.544 ;23.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;10.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;11.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 789 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6042 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2620 ; 2.518 ; 3.664 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2619 ; 2.511 ; 3.663 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3296 ; 3.877 ; 5.481 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3297 ; 3.877 ; 5.482 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 2.742 ; 4.044 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2610 ; 2.742 ; 4.044 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3843 ; 4.260 ; 5.921 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5891 ; 7.104 ;29.763 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5892 ; 7.104 ;29.773 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0172 1.3937 5.0025 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.2950 REMARK 3 T33: 0.1474 T12: 0.0870 REMARK 3 T13: -0.0680 T23: -0.0912 REMARK 3 L TENSOR REMARK 3 L11: 2.8849 L22: 2.0052 REMARK 3 L33: 3.6394 L12: 0.9229 REMARK 3 L13: -0.0641 L23: 1.0794 REMARK 3 S TENSOR REMARK 3 S11: -0.1652 S12: -0.4703 S13: 0.4727 REMARK 3 S21: -0.0700 S22: -0.0709 S23: 0.3609 REMARK 3 S31: -0.3684 S32: -0.6762 S33: 0.2361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7781 6.9594 6.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1517 REMARK 3 T33: 0.2118 T12: -0.0385 REMARK 3 T13: -0.0554 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 3.5122 L22: 2.3759 REMARK 3 L33: 4.5557 L12: -0.3169 REMARK 3 L13: 0.4636 L23: -0.4065 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.3156 S13: 0.4911 REMARK 3 S21: 0.0087 S22: -0.0418 S23: -0.2002 REMARK 3 S31: -0.3202 S32: 0.2912 S33: 0.0820 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8352 -11.3719 -9.3492 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0617 REMARK 3 T33: 0.0273 T12: -0.0428 REMARK 3 T13: -0.0119 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.7587 L22: 1.9109 REMARK 3 L33: 2.1755 L12: 0.4312 REMARK 3 L13: -0.0326 L23: -0.3546 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.0072 S13: -0.0941 REMARK 3 S21: -0.0661 S22: 0.0563 S23: 0.1105 REMARK 3 S31: 0.1406 S32: -0.2482 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 347 A 636 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6130 -2.0336 -24.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.2303 REMARK 3 T33: 0.1642 T12: -0.0862 REMARK 3 T13: 0.0137 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 1.9163 L22: 2.0149 REMARK 3 L33: 2.9164 L12: -0.2696 REMARK 3 L13: -0.4332 L23: 0.0465 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: 0.3247 S13: 0.2305 REMARK 3 S21: -0.3043 S22: 0.0097 S23: -0.3685 REMARK 3 S31: 0.0232 S32: 0.4737 S33: 0.1026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97875 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 6.0 MG/ML, 0.1M POTTASIUM REMARK 280 CHLORIDE, 0.01 M TRIS-HCL BUFFER PH 8.3, 5% GLYCEROL, AND 0.5 MM REMARK 280 TCEP; SCREEN: CUBIC PHASE I (F10), 2.4 M NA/K PHOSPHATE PH 7.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.38950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.88100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.88100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.38950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 MSE A 9 REMARK 465 ALA A 10 REMARK 465 TYR A 11 REMARK 465 HIS A 12 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 ASN A 26 REMARK 465 ASP A 637 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 121 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 22 -66.21 -145.94 REMARK 500 LEU A 91 78.51 -115.71 REMARK 500 ASN A 95 -169.16 -164.69 REMARK 500 LEU A 115 -139.53 -137.54 REMARK 500 PRO A 121 -50.47 -23.30 REMARK 500 HIS A 123 17.90 85.50 REMARK 500 ALA A 135 72.52 30.72 REMARK 500 LYS A 159 -97.76 -34.08 REMARK 500 SER A 321 -18.37 105.87 REMARK 500 THR A 356 -62.11 73.82 REMARK 500 LEU A 357 -60.75 -161.12 REMARK 500 LYS A 450 71.49 -117.96 REMARK 500 LEU A 470 81.91 85.42 REMARK 500 ASP A 540 118.26 -168.84 REMARK 500 ALA A 543 -58.81 -140.56 REMARK 500 PHE A 547 126.28 -36.17 REMARK 500 ASP A 548 92.94 -170.11 REMARK 500 ARG A 612 58.71 -94.57 REMARK 500 ALA A 613 -32.76 -157.92 REMARK 500 VAL A 627 61.96 -111.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 649 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91652 RELATED DB: TARGETTRACK DBREF 5HM3 A 2 637 UNP O53580 FAA32_MYCTU 2 637 SEQADV 5HM3 MSE A -19 UNP O53580 INITIATING METHIONINE SEQADV 5HM3 GLY A -18 UNP O53580 EXPRESSION TAG SEQADV 5HM3 SER A -17 UNP O53580 EXPRESSION TAG SEQADV 5HM3 SER A -16 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -15 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -14 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -13 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -12 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -11 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A -10 UNP O53580 EXPRESSION TAG SEQADV 5HM3 SER A -9 UNP O53580 EXPRESSION TAG SEQADV 5HM3 SER A -8 UNP O53580 EXPRESSION TAG SEQADV 5HM3 GLY A -7 UNP O53580 EXPRESSION TAG SEQADV 5HM3 LEU A -6 UNP O53580 EXPRESSION TAG SEQADV 5HM3 VAL A -5 UNP O53580 EXPRESSION TAG SEQADV 5HM3 PRO A -4 UNP O53580 EXPRESSION TAG SEQADV 5HM3 ARG A -3 UNP O53580 EXPRESSION TAG SEQADV 5HM3 GLY A -2 UNP O53580 EXPRESSION TAG SEQADV 5HM3 SER A -1 UNP O53580 EXPRESSION TAG SEQADV 5HM3 HIS A 0 UNP O53580 EXPRESSION TAG SEQADV 5HM3 MSE A 1 UNP O53580 EXPRESSION TAG SEQRES 1 A 657 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 657 LEU VAL PRO ARG GLY SER HIS MSE PHE VAL THR GLY GLU SEQRES 3 A 657 SER GLY MSE ALA TYR HIS ASN PRO PHE ILE VAL ASN GLY SEQRES 4 A 657 LYS ILE ARG PHE PRO ALA ASN THR ASN LEU VAL ARG HIS SEQRES 5 A 657 VAL GLU LYS TRP ALA LYS VAL ARG GLY ASP LYS LEU ALA SEQRES 6 A 657 TYR ARG PHE LEU ASP PHE SER THR GLU ARG ASP GLY VAL SEQRES 7 A 657 ALA ARG ASP ILE LEU TRP SER ASP PHE SER ALA ARG ASN SEQRES 8 A 657 ARG ALA VAL GLY ALA ARG LEU GLN GLN VAL THR GLN PRO SEQRES 9 A 657 GLY ASP ARG VAL ALA ILE LEU CYS PRO GLN ASN LEU ASP SEQRES 10 A 657 TYR LEU ILE SER PHE PHE GLY ALA LEU TYR SER GLY ARG SEQRES 11 A 657 ILE ALA VAL PRO LEU PHE ASP PRO ALA GLU PRO GLY HIS SEQRES 12 A 657 VAL GLY ARG LEU HIS ALA VAL LEU ASP ASP CYS ALA PRO SEQRES 13 A 657 SER THR ILE LEU THR THR THR ASP SER ALA GLU GLY VAL SEQRES 14 A 657 ARG LYS PHE ILE ARG ALA ARG SER ALA LYS GLU ARG PRO SEQRES 15 A 657 ARG VAL ILE ALA VAL ASP ALA VAL PRO THR GLU VAL ALA SEQRES 16 A 657 ALA THR TRP GLN GLN PRO GLU ALA ASN GLU GLU THR VAL SEQRES 17 A 657 ALA TYR LEU GLN TYR THR SER GLY SER THR ARG ILE PRO SEQRES 18 A 657 SER GLY VAL GLN ILE THR HIS LEU ASN LEU PRO THR ASN SEQRES 19 A 657 VAL VAL GLN VAL LEU ASN ALA LEU GLU GLY GLN GLU GLY SEQRES 20 A 657 ASP ARG GLY VAL SER TRP LEU PRO PHE PHE HIS ASP MSE SEQRES 21 A 657 GLY LEU ILE THR VAL LEU LEU ALA SER VAL LEU GLY HIS SEQRES 22 A 657 SER PHE THR PHE MSE THR PRO ALA ALA PHE VAL ARG ARG SEQRES 23 A 657 PRO GLY ARG TRP ILE ARG GLU LEU ALA ARG LYS PRO GLY SEQRES 24 A 657 GLU THR GLY GLY THR PHE SER ALA ALA PRO ASN PHE ALA SEQRES 25 A 657 PHE GLU HIS ALA ALA VAL ARG GLY VAL PRO ARG ASP ASP SEQRES 26 A 657 GLU PRO PRO LEU ASP LEU SER ASN VAL LYS GLY ILE LEU SEQRES 27 A 657 ASN GLY SER GLU PRO VAL SER PRO ALA SER MSE ARG LYS SEQRES 28 A 657 PHE PHE GLU ALA PHE ALA PRO TYR GLY LEU LYS GLN THR SEQRES 29 A 657 ALA VAL LYS PRO SER TYR GLY LEU ALA GLU ALA THR LEU SEQRES 30 A 657 PHE VAL SER THR THR PRO MSE ASP GLU VAL PRO THR VAL SEQRES 31 A 657 ILE HIS VAL ASP ARG ASP GLU LEU ASN ASN GLN ARG PHE SEQRES 32 A 657 VAL GLU VAL ALA ALA ASP ALA PRO ASN ALA VAL ALA GLN SEQRES 33 A 657 VAL SER ALA GLY LYS VAL GLY VAL SER GLU TRP ALA VAL SEQRES 34 A 657 ILE VAL ASP ALA ASP THR ALA SER GLU LEU PRO ASP GLY SEQRES 35 A 657 GLN ILE GLY GLU ILE TRP LEU HIS GLY ASN ASN LEU GLY SEQRES 36 A 657 THR GLY TYR TRP GLY LYS GLU GLU GLU SER ALA GLN THR SEQRES 37 A 657 PHE LYS ASN ILE LEU LYS SER ARG ILE SER GLU SER ARG SEQRES 38 A 657 ALA GLU GLY ALA PRO ASP ASP ALA LEU TRP VAL ARG THR SEQRES 39 A 657 GLY ASP TYR GLY THR TYR PHE LYS ASP HIS LEU TYR ILE SEQRES 40 A 657 ALA GLY ARG ILE LYS ASP LEU VAL ILE ILE ASP GLY ARG SEQRES 41 A 657 ASN HIS TYR PRO GLN ASP LEU GLU CME THR ALA GLN GLU SEQRES 42 A 657 SER THR LYS ALA LEU ARG VAL GLY TYR ALA ALA ALA PHE SEQRES 43 A 657 SER VAL PRO ALA ASN GLN LEU PRO GLN THR VAL PHE ASP SEQRES 44 A 657 ASP SER HIS ALA GLY LEU LYS PHE ASP PRO GLU ASP THR SEQRES 45 A 657 SER GLU GLN LEU VAL ILE VAL GLY GLU ARG ALA ALA GLY SEQRES 46 A 657 THR HIS LYS LEU ASP HIS GLN PRO ILE VAL ASP ASP ILE SEQRES 47 A 657 ARG ALA ALA ILE ALA VAL GLY HIS GLY VAL THR VAL ARG SEQRES 48 A 657 ASP VAL LEU LEU VAL SER ALA GLY THR ILE PRO ARG THR SEQRES 49 A 657 SER SER GLY LYS ILE GLY ARG ARG ALA CYS ARG ALA ALA SEQRES 50 A 657 TYR LEU ASP GLY SER LEU ARG SER GLY VAL GLY SER PRO SEQRES 51 A 657 THR VAL PHE ALA THR SER ASP MODRES 5HM3 MSE A 240 MET MODIFIED RESIDUE MODRES 5HM3 MSE A 258 MET MODIFIED RESIDUE MODRES 5HM3 MSE A 329 MET MODIFIED RESIDUE MODRES 5HM3 MSE A 364 MET MODIFIED RESIDUE MODRES 5HM3 CME A 509 CYS MODIFIED RESIDUE HET MSE A 240 8 HET MSE A 258 8 HET MSE A 329 8 HET MSE A 364 8 HET CME A 509 10 HET 649 A 701 42 HET CL A 702 1 HET CL A 703 1 HET PO4 A 704 5 HET PO4 A 705 5 HET PO4 A 706 5 HET PEG A 707 7 HET GOL A 708 6 HET GOL A 709 6 HETNAM MSE SELENOMETHIONINE HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM 649 5'-O-[(11-PHENOXYUNDECANOYL)SULFAMOYL]ADENOSINE HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 649 C27 H38 N6 O8 S FORMUL 3 CL 2(CL 1-) FORMUL 5 PO4 3(O4 P 3-) FORMUL 8 PEG C4 H10 O3 FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *131(H2 O) HELIX 1 AA1 ASN A 28 ARG A 40 1 13 HELIX 2 AA2 TRP A 64 THR A 82 1 19 HELIX 3 AA3 ASN A 95 GLY A 109 1 15 HELIX 4 AA4 HIS A 123 ALA A 135 1 13 HELIX 5 AA5 THR A 142 ALA A 155 1 14 HELIX 6 AA6 ASP A 168 VAL A 170 5 3 HELIX 7 AA7 PRO A 171 TRP A 178 5 8 HELIX 8 AA8 LEU A 209 GLU A 223 1 15 HELIX 9 AA9 HIS A 238 VAL A 250 1 13 HELIX 10 AB1 THR A 259 ARG A 266 1 8 HELIX 11 AB2 PRO A 267 ALA A 275 1 9 HELIX 12 AB3 PRO A 289 GLY A 300 1 12 HELIX 13 AB4 SER A 325 ALA A 337 1 13 HELIX 14 AB5 PRO A 338 GLY A 340 5 3 HELIX 15 AB6 ALA A 353 THR A 356 5 4 HELIX 16 AB7 ARG A 375 ASN A 379 1 5 HELIX 17 AB8 LYS A 441 LYS A 450 1 10 HELIX 18 AB9 LYS A 492 LEU A 494 5 3 HELIX 19 AC1 TYR A 503 THR A 515 1 13 HELIX 20 AC2 PRO A 534 PHE A 538 5 5 HELIX 21 AC3 ASP A 570 GLY A 587 1 18 HELIX 22 AC4 GLY A 610 ASP A 620 1 11 SHEET 1 AA1 2 ILE A 16 VAL A 17 0 SHEET 2 AA1 2 LYS A 20 ILE A 21 -1 O LYS A 20 N VAL A 17 SHEET 1 AA2 9 VAL A 58 LEU A 63 0 SHEET 2 AA2 9 LEU A 44 ASP A 50 -1 N PHE A 48 O ARG A 60 SHEET 3 AA2 9 PHE A 255 PHE A 257 1 O PHE A 257 N LEU A 49 SHEET 4 AA2 9 ARG A 229 SER A 232 1 N SER A 232 O THR A 256 SHEET 5 AA2 9 THR A 284 ALA A 288 1 O PHE A 285 N ARG A 229 SHEET 6 AA2 9 VAL A 314 ASN A 319 1 O LEU A 318 N SER A 286 SHEET 7 AA2 9 VAL A 346 GLY A 351 1 O LYS A 347 N ILE A 317 SHEET 8 AA2 9 PHE A 358 THR A 361 -1 O VAL A 359 N TYR A 350 SHEET 9 AA2 9 LYS A 401 VAL A 402 -1 O LYS A 401 N THR A 361 SHEET 1 AA3 4 ILE A 111 PRO A 114 0 SHEET 2 AA3 4 ARG A 87 ILE A 90 1 N ILE A 90 O VAL A 113 SHEET 3 AA3 4 THR A 138 THR A 141 1 O LEU A 140 N ALA A 89 SHEET 4 AA3 4 ARG A 163 ALA A 166 1 O ARG A 163 N ILE A 139 SHEET 1 AA4 2 VAL A 188 THR A 194 0 SHEET 2 AA4 2 SER A 202 THR A 207 -1 O SER A 202 N THR A 194 SHEET 1 AA5 2 VAL A 370 ASP A 374 0 SHEET 2 AA5 2 ALA A 393 VAL A 397 -1 O VAL A 394 N VAL A 373 SHEET 1 AA6 5 SER A 417 GLU A 418 0 SHEET 2 AA6 5 GLU A 406 ASP A 412 -1 N ASP A 412 O SER A 417 SHEET 3 AA6 5 GLY A 425 GLY A 431 -1 O GLU A 426 N VAL A 411 SHEET 4 AA6 5 LEU A 470 PHE A 481 -1 O VAL A 472 N LEU A 429 SHEET 5 AA6 5 ASN A 451 ILE A 452 -1 N ASN A 451 O TRP A 471 SHEET 1 AA7 5 SER A 417 GLU A 418 0 SHEET 2 AA7 5 GLU A 406 ASP A 412 -1 N ASP A 412 O SER A 417 SHEET 3 AA7 5 GLY A 425 GLY A 431 -1 O GLU A 426 N VAL A 411 SHEET 4 AA7 5 LEU A 470 PHE A 481 -1 O VAL A 472 N LEU A 429 SHEET 5 AA7 5 HIS A 484 ARG A 490 -1 O GLY A 489 N TYR A 477 SHEET 1 AA8 3 LEU A 518 PRO A 529 0 SHEET 2 AA8 3 GLU A 554 ARG A 562 -1 O VAL A 559 N ALA A 524 SHEET 3 AA8 3 ASP A 592 VAL A 596 1 O VAL A 596 N ARG A 562 LINK C ASP A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N GLY A 241 1555 1555 1.33 LINK C PHE A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N THR A 259 1555 1555 1.32 LINK C SER A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N ARG A 330 1555 1555 1.34 LINK C PRO A 363 N MSE A 364 1555 1555 1.33 LINK C MSE A 364 N ASP A 365 1555 1555 1.32 LINK C GLU A 508 N CME A 509 1555 1555 1.32 LINK C CME A 509 N THR A 510 1555 1555 1.33 CISPEP 1 GLY A 628 SER A 629 0 -1.62 SITE 1 AC1 19 LEU A 222 HIS A 238 ASP A 239 LEU A 247 SITE 2 AC1 19 ALA A 248 SER A 321 GLU A 322 PRO A 323 SITE 3 AC1 19 SER A 349 TYR A 350 GLY A 351 LEU A 352 SITE 4 AC1 19 ALA A 353 LEU A 357 ASP A 476 LYS A 608 SITE 5 AC1 19 HOH A 857 HOH A 867 HOH A 882 SITE 1 AC2 2 ARG A 55 THR A 281 SITE 1 AC3 1 ARG A 500 SITE 1 AC4 6 ARG A 70 ASP A 97 ILE A 100 ASP A 168 SITE 2 AC4 6 HIS A 567 HOH A 807 SITE 1 AC5 2 ARG A 265 ARG A 266 SITE 1 AC6 4 SER A 195 ARG A 490 LYS A 492 HOH A 804 SITE 1 AC7 6 HIS A 123 ARG A 126 SER A 195 THR A 604 SITE 2 AC7 6 SER A 605 SER A 606 SITE 1 AC8 4 GLU A 294 ARG A 519 VAL A 520 HOH A 850 SITE 1 AC9 4 LEU A 44 HIS A 253 SER A 254 SER A 636 CRYST1 62.779 74.558 127.762 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007827 0.00000