HEADER HYDROLASE 16-JAN-16 5HMJ TITLE RE-REFINEMENT OF 4XAN: HEN LYSOZYME WITH CARBOPLATIN IN SODIUM BROMIDE TITLE 2 SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS CARBOPLATIN, HISTIDINE, NABR, HEN EGG WHITE LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HELLIWELL REVDAT 6 10-JAN-24 5HMJ 1 REMARK REVDAT 5 01-AUG-18 5HMJ 1 JRNL REVDAT 4 18-APR-18 5HMJ 1 JRNL REVDAT 3 13-SEP-17 5HMJ 1 REMARK REVDAT 2 09-MAR-16 5HMJ 1 JRNL REVDAT 1 02-MAR-16 5HMJ 0 SPRSDE 02-MAR-16 5HMJ 4XAN JRNL AUTH S.W.TANLEY,A.M.SCHREURS,L.M.KROON-BATENBURG,J.R.HELLIWELL JRNL TITL RE-REFINEMENT OF 4XAN: HEN EGG-WHITE LYSOZYME WITH JRNL TITL 2 CARBOPLATIN IN SODIUM BROMIDE SOLUTION. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 251 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 26919531 JRNL DOI 10.1107/S2053230X16000777 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.TANLEY,J.R.HELLIWELL REMARK 1 TITL STRUCTURAL DYNAMICS OF CISPLATIN BINDING TO HISTIDINE IN A REMARK 1 TITL 2 PROTEIN. REMARK 1 REF STRUCT DYN V. 1 34701 2014 REMARK 1 REFN ESSN 2329-7778 REMARK 1 PMID 26798779 REMARK 1 DOI 10.1063/1.4883975 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 3 NUMBER OF REFLECTIONS : 23088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.026 REMARK 3 FREE R VALUE TEST SET COUNT : 2183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3079 - 3.2750 0.99 3282 128 0.1618 0.2023 REMARK 3 2 3.2750 - 2.5996 0.98 3228 165 0.1655 0.1959 REMARK 3 3 2.5996 - 2.2710 0.99 3215 162 0.1431 0.1689 REMARK 3 4 2.2710 - 2.0634 0.99 3214 160 0.1384 0.1939 REMARK 3 5 2.0634 - 1.9155 0.97 3200 163 0.1415 0.1916 REMARK 3 6 1.9155 - 1.8026 0.98 3201 155 0.1534 0.2234 REMARK 3 7 1.8026 - 1.7123 0.98 3175 185 0.1667 0.2572 REMARK 3 8 1.7123 - 1.6378 0.96 3088 206 0.1789 0.2421 REMARK 3 9 1.6378 - 1.5747 0.94 3040 200 0.1851 0.2663 REMARK 3 10 1.5747 - 1.5204 0.90 2938 151 0.2083 0.2852 REMARK 3 11 1.5204 - 1.4728 0.77 2505 117 0.2198 0.2952 REMARK 3 12 1.4728 - 1.4307 0.62 2002 104 0.2307 0.3016 REMARK 3 13 1.4307 - 1.3931 0.51 1639 94 0.2543 0.3395 REMARK 3 14 1.3931 - 1.3591 0.42 1360 82 0.2760 0.3108 REMARK 3 15 1.3591 - 1.3282 0.37 1202 58 0.2862 0.3618 REMARK 3 16 1.3282 - 1.2999 0.30 963 53 0.2990 0.3809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.178 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1082 REMARK 3 ANGLE : 1.183 1452 REMARK 3 CHIRALITY : 0.084 148 REMARK 3 PLANARITY : 0.005 194 REMARK 3 DIHEDRAL : 12.293 387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : EVAL REMARK 200 DATA SCALING SOFTWARE : EVAL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 31.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 2.05800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CO-CRYSTALLIZING 20 MG ML HEWL WITH REMARK 280 1.4 MG CARBOPLATIN IN 75 MICROL DMSO, 462.5 MICROL 0.1 M SODIUM REMARK 280 ACETATE, 462.5 MICROL 1 M NABR SOLUTION., PH 4.7, BATCH MODE, REMARK 280 TEMPERATURE 297K . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.64500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.29000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.96750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.29000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.32250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.96750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.32250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.64500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR BR A 214 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 45 O HOH A 306 8554 1.53 REMARK 500 NH2 ARG A 45 O HOH A 306 8554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 31.15 -141.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 88.3 REMARK 620 3 SER A 72 OG 90.6 164.8 REMARK 620 4 ARG A 73 O 95.9 92.4 102.8 REMARK 620 5 HOH A 339 O 97.9 88.0 77.1 166.2 REMARK 620 6 HOH A 353 O 173.2 97.9 82.6 86.6 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XAN RELATED DB: PDB REMARK 900 A RE-REFINEMENT OF 4XAN, HEN EGG WHITE LYSOZYME (HEWL) WITH REMARK 900 CARBOPLATIN CRYSTALLISED IN NABR SOLUTION, HAS BEEN MADE. THIS REMARK 900 FOLLOWS OUR RESPONSE ARTICLE (TANLEY ET AL 2015) TO THE CRITIQUE REMARK 900 ARTICLE OF SHABALIN ET AL 2015. NB 4XAN SUPERCEDED 4NSF. THE REMARK 900 DIFFRACTION IMAGE DATA ARE AVAILABLE AT HTTP://DX.DOI.ORG/10.15127/ REMARK 900 1.266906 DBREF 5HMJ A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET BR A 201 1 HET BR A 202 1 HET BR A 203 1 HET BR A 204 1 HET BR A 205 1 HET BR A 206 1 HET NA A 207 1 HET BR A 208 1 HET BR A 209 1 HET PT A 210 1 HET BR A 211 1 HET BR A 212 1 HET BR A 213 1 HET BR A 214 1 HET BR A 215 1 HET ACT A 216 7 HET DMS A 217 4 HET DMS A 218 4 HET BR A 219 2 HETNAM BR BROMIDE ION HETNAM NA SODIUM ION HETNAM PT PLATINUM (II) ION HETNAM ACT ACETATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 BR 14(BR 1-) FORMUL 8 NA NA 1+ FORMUL 11 PT PT 2+ FORMUL 17 ACT C2 H3 O2 1- FORMUL 18 DMS 2(C2 H6 O S) FORMUL 21 HOH *82(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.08 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.05 LINK ND1 HIS A 15 PT PT A 210 1555 1555 2.06 LINK O SER A 60 NA NA A 207 1555 1555 2.33 LINK O CYS A 64 NA NA A 207 1555 1555 2.38 LINK OG SER A 72 NA NA A 207 1555 1555 2.49 LINK O ARG A 73 NA NA A 207 1555 1555 2.41 LINK NA NA A 207 O HOH A 339 1555 1555 2.49 LINK NA NA A 207 O HOH A 353 1555 1555 2.50 SITE 1 AC1 2 HIS A 15 PT A 210 SITE 1 AC2 2 HIS A 15 PT A 210 SITE 1 AC3 2 TYR A 23 ASN A 113 SITE 1 AC4 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC5 4 GLY A 67 ARG A 68 THR A 69 SER A 72 SITE 1 AC6 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC6 6 HOH A 339 HOH A 353 SITE 1 AC7 2 ARG A 73 ASN A 74 SITE 1 AC8 3 HIS A 15 BR A 201 BR A 202 SITE 1 AC9 1 CYS A 6 SITE 1 AD1 2 ARG A 14 ILE A 88 SITE 1 AD2 1 GLY A 71 SITE 1 AD3 2 LYS A 1 VAL A 2 SITE 1 AD4 2 ARG A 5 ALA A 122 SITE 1 AD5 6 ILE A 58 ASN A 59 TRP A 63 ILE A 98 SITE 2 AD5 6 ALA A 107 HOH A 336 SITE 1 AD6 3 ARG A 61 TRP A 62 GLY A 71 SITE 1 AD7 4 ASN A 65 ASN A 74 ILE A 78 PRO A 79 CRYST1 78.580 78.580 37.290 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026817 0.00000