HEADER HYDROLASE 16-JAN-16 5HMM TITLE CRYSTAL STRUCTURE OF T5 D15 PROTEIN CO-CRYSTALLIZED WITH METAL IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-290; COMPND 5 SYNONYM: 5'-EXONUCLEASE,T5FEN, EXONUCLEASE (FLAP ENDONUCLEASE); COMPND 6 EC: 3.1.11.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T5; SOURCE 3 ORGANISM_TAXID: 10726; SOURCE 4 GENE: D15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M72; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJONEX4 KEYWDS METAL ION COMPLEX, FLAP ENDONUCLEASE, ALTERNATIVE CONFORMATIONS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.FLEMMING,S.E.SEDELNIKOVA,J.B.RAFFERTY,J.R.SAYERS,P.J.ARTYMIUK REVDAT 5 10-JAN-24 5HMM 1 LINK REVDAT 4 20-JUL-16 5HMM 1 JRNL REVDAT 3 22-JUN-16 5HMM 1 JRNL REVDAT 2 08-JUN-16 5HMM 1 JRNL REVDAT 1 01-JUN-16 5HMM 0 JRNL AUTH F.A.ALMALKI,C.S.FLEMMING,J.ZHANG,M.FENG,S.E.SEDELNIKOVA, JRNL AUTH 2 T.CESKA,J.B.RAFFERTY,J.R.SAYERS,P.J.ARTYMIUK JRNL TITL DIRECT OBSERVATION OF DNA THREADING IN FLAP ENDONUCLEASE JRNL TITL 2 COMPLEXES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 640 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27273516 JRNL DOI 10.1038/NSMB.3241 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 79049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : -0.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4533 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4322 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6134 ; 1.329 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9943 ; 1.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 5.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;32.030 ;24.192 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 815 ;11.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;13.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5160 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1072 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 2.778 ; 1.350 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2193 ; 2.729 ; 1.349 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2754 ; 3.066 ; 2.032 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8855 ;11.794 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 175 ;33.009 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9194 ;27.767 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5HMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97836 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 54.735 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : 0.32200 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EXN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PACT H2: 0.2M NA BROMIDE, 0.1M BIS REMARK 280 TRIS PROPANE PH 8.5, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 36 REMARK 465 ASN A 37 REMARK 465 ASN A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 671 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 726 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 727 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 HOH A 425 O 89.3 REMARK 620 3 HOH A 438 O 90.6 177.2 REMARK 620 4 HOH A 440 O 91.5 89.6 87.6 REMARK 620 5 HOH A 524 O 89.6 91.8 91.0 178.2 REMARK 620 6 HOH A 642 O 175.0 87.3 93.0 92.2 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD2 REMARK 620 2 ASP A 153 OD2 103.0 REMARK 620 3 ASP A 155 OD2 111.2 95.8 REMARK 620 4 HOH A 524 O 87.5 88.8 159.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 ASP A 201 OD2 104.0 REMARK 620 3 HOH A 401 O 81.9 95.3 REMARK 620 4 HOH A 418 O 89.3 165.9 91.1 REMARK 620 5 HOH A 532 O 161.0 87.8 82.2 80.6 REMARK 620 6 HOH A 556 O 106.6 83.4 171.5 88.4 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 87 OD1 REMARK 620 2 HOH B 401 O 89.8 REMARK 620 3 HOH B 418 O 88.2 86.9 REMARK 620 4 HOH B 443 O 85.1 173.4 88.8 REMARK 620 5 HOH B 594 O 88.0 90.3 175.2 93.8 REMARK 620 6 HOH B 600 O 176.4 93.3 90.3 91.6 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 HOH B 412 O 86.9 REMARK 620 3 HOH B 429 O 92.7 176.2 REMARK 620 4 HOH B 438 O 90.9 87.7 88.4 REMARK 620 5 HOH B 462 O 88.2 91.0 92.8 178.5 REMARK 620 6 HOH B 676 O 173.4 89.7 91.1 94.5 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD2 REMARK 620 2 HOH B 449 O 81.7 REMARK 620 3 HOH B 452 O 88.9 89.5 REMARK 620 4 HOH B 506 O 74.9 80.3 161.8 REMARK 620 5 HOH B 604 O 70.4 151.7 94.7 87.6 REMARK 620 6 HOH B 682 O 175.5 98.7 95.6 100.7 108.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HML RELATED DB: PDB REMARK 900 5HML CONTAINS THE D153K MUTATION. DBREF 5HMM A 20 290 UNP P06229 EXO5_BPT5 20 290 DBREF 5HMM B 20 290 UNP P06229 EXO5_BPT5 20 290 SEQRES 1 A 271 ARG ASN LEU MET ILE VAL ASP GLY THR ASN LEU GLY PHE SEQRES 2 A 271 ARG PHE LYS HIS ASN ASN SER LYS LYS PRO PHE ALA SER SEQRES 3 A 271 SER TYR VAL SER THR ILE GLN SER LEU ALA LYS SER TYR SEQRES 4 A 271 SER ALA ARG THR THR ILE VAL LEU GLY ASP LYS GLY LYS SEQRES 5 A 271 SER VAL PHE ARG LEU GLU HIS LEU PRO GLU TYR LYS GLY SEQRES 6 A 271 ASN ARG ASP GLU LYS TYR ALA GLN ARG THR GLU GLU GLU SEQRES 7 A 271 LYS ALA LEU ASP GLU GLN PHE PHE GLU TYR LEU LYS ASP SEQRES 8 A 271 ALA PHE GLU LEU CYS LYS THR THR PHE PRO THR PHE THR SEQRES 9 A 271 ILE ARG GLY VAL GLU ALA ASP ASP MET ALA ALA TYR ILE SEQRES 10 A 271 VAL LYS LEU ILE GLY HIS LEU TYR ASP HIS VAL TRP LEU SEQRES 11 A 271 ILE SER THR ASP GLY ASP TRP ASP THR LEU LEU THR ASP SEQRES 12 A 271 LYS VAL SER ARG PHE SER PHE THR THR ARG ARG GLU TYR SEQRES 13 A 271 HIS LEU ARG ASP MET TYR GLU HIS HIS ASN VAL ASP ASP SEQRES 14 A 271 VAL GLU GLN PHE ILE SER LEU LYS ALA ILE MET GLY ASP SEQRES 15 A 271 LEU GLY ASP ASN ILE ARG GLY VAL GLU GLY ILE GLY ALA SEQRES 16 A 271 LYS ARG GLY TYR ASN ILE ILE ARG GLU PHE GLY ASN VAL SEQRES 17 A 271 LEU ASP ILE ILE ASP GLN LEU PRO LEU PRO GLY LYS GLN SEQRES 18 A 271 LYS TYR ILE GLN ASN LEU ASN ALA SER GLU GLU LEU LEU SEQRES 19 A 271 PHE ARG ASN LEU ILE LEU VAL ASP LEU PRO THR TYR CYS SEQRES 20 A 271 VAL ASP ALA ILE ALA ALA VAL GLY GLN ASP VAL LEU ASP SEQRES 21 A 271 LYS PHE THR LYS ASP ILE LEU GLU ILE ALA GLU SEQRES 1 B 271 ARG ASN LEU MET ILE VAL ASP GLY THR ASN LEU GLY PHE SEQRES 2 B 271 ARG PHE LYS HIS ASN ASN SER LYS LYS PRO PHE ALA SER SEQRES 3 B 271 SER TYR VAL SER THR ILE GLN SER LEU ALA LYS SER TYR SEQRES 4 B 271 SER ALA ARG THR THR ILE VAL LEU GLY ASP LYS GLY LYS SEQRES 5 B 271 SER VAL PHE ARG LEU GLU HIS LEU PRO GLU TYR LYS GLY SEQRES 6 B 271 ASN ARG ASP GLU LYS TYR ALA GLN ARG THR GLU GLU GLU SEQRES 7 B 271 LYS ALA LEU ASP GLU GLN PHE PHE GLU TYR LEU LYS ASP SEQRES 8 B 271 ALA PHE GLU LEU CYS LYS THR THR PHE PRO THR PHE THR SEQRES 9 B 271 ILE ARG GLY VAL GLU ALA ASP ASP MET ALA ALA TYR ILE SEQRES 10 B 271 VAL LYS LEU ILE GLY HIS LEU TYR ASP HIS VAL TRP LEU SEQRES 11 B 271 ILE SER THR ASP GLY ASP TRP ASP THR LEU LEU THR ASP SEQRES 12 B 271 LYS VAL SER ARG PHE SER PHE THR THR ARG ARG GLU TYR SEQRES 13 B 271 HIS LEU ARG ASP MET TYR GLU HIS HIS ASN VAL ASP ASP SEQRES 14 B 271 VAL GLU GLN PHE ILE SER LEU LYS ALA ILE MET GLY ASP SEQRES 15 B 271 LEU GLY ASP ASN ILE ARG GLY VAL GLU GLY ILE GLY ALA SEQRES 16 B 271 LYS ARG GLY TYR ASN ILE ILE ARG GLU PHE GLY ASN VAL SEQRES 17 B 271 LEU ASP ILE ILE ASP GLN LEU PRO LEU PRO GLY LYS GLN SEQRES 18 B 271 LYS TYR ILE GLN ASN LEU ASN ALA SER GLU GLU LEU LEU SEQRES 19 B 271 PHE ARG ASN LEU ILE LEU VAL ASP LEU PRO THR TYR CYS SEQRES 20 B 271 VAL ASP ALA ILE ALA ALA VAL GLY GLN ASP VAL LEU ASP SEQRES 21 B 271 LYS PHE THR LYS ASP ILE LEU GLU ILE ALA GLU HET EDO A 301 4 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET CL A 305 1 HET CL A 306 1 HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 MG 6(MG 2+) FORMUL 7 CL 6(CL 1-) FORMUL 16 HOH *598(H2 O) HELIX 1 AA1 GLY A 27 PHE A 32 1 6 HELIX 2 AA2 PHE A 43 TYR A 58 1 16 HELIX 3 AA3 SER A 72 LEU A 79 1 8 HELIX 4 AA4 LYS A 83 GLN A 92 1 10 HELIX 5 AA5 THR A 94 PHE A 119 1 26 HELIX 6 AA6 GLU A 128 GLY A 141 1 14 HELIX 7 AA7 HIS A 142 TYR A 144 5 3 HELIX 8 AA8 ASP A 153 LEU A 160 5 8 HELIX 9 AA9 HIS A 176 ARG A 178 5 3 HELIX 10 AB1 ASP A 179 ASN A 185 1 7 HELIX 11 AB2 ASP A 188 GLY A 200 1 13 HELIX 12 AB3 GLY A 213 GLY A 225 1 13 HELIX 13 AB4 ASN A 226 LEU A 234 1 9 HELIX 14 AB5 GLN A 240 ALA A 248 1 9 HELIX 15 AB6 SER A 249 ASP A 261 1 13 HELIX 16 AB7 ASP A 261 ALA A 272 1 12 HELIX 17 AB8 GLY A 274 ALA A 289 1 16 HELIX 18 AB9 GLY B 27 HIS B 36 1 10 HELIX 19 AC1 PHE B 43 TYR B 58 1 16 HELIX 20 AC2 SER B 72 LEU B 79 1 8 HELIX 21 AC3 THR B 94 THR B 117 1 24 HELIX 22 AC4 GLU B 128 GLY B 141 1 14 HELIX 23 AC5 HIS B 142 TYR B 144 5 3 HELIX 24 AC6 ASP B 153 LEU B 160 5 8 HELIX 25 AC7 HIS B 176 ARG B 178 5 3 HELIX 26 AC8 ASP B 179 ASN B 185 1 7 HELIX 27 AC9 ASP B 188 GLY B 200 1 13 HELIX 28 AD1 GLY B 213 GLY B 225 1 13 HELIX 29 AD2 ASN B 226 LEU B 234 1 9 HELIX 30 AD3 GLN B 240 ALA B 248 1 9 HELIX 31 AD4 SER B 249 ASP B 261 1 13 HELIX 32 AD5 ASP B 261 ALA B 272 1 12 HELIX 33 AD6 GLY B 274 GLU B 290 1 17 SHEET 1 AA1 6 THR A 121 PHE A 122 0 SHEET 2 AA1 6 ALA A 60 LEU A 66 1 N VAL A 65 O PHE A 122 SHEET 3 AA1 6 ASN A 21 ASP A 26 1 N VAL A 25 O ILE A 64 SHEET 4 AA1 6 VAL A 147 ILE A 150 1 O TRP A 148 N LEU A 22 SHEET 5 AA1 6 VAL A 164 PHE A 167 1 O PHE A 167 N LEU A 149 SHEET 6 AA1 6 GLU A 174 TYR A 175 -1 O TYR A 175 N ARG A 166 SHEET 1 AA2 6 THR B 121 THR B 123 0 SHEET 2 AA2 6 ALA B 60 GLY B 67 1 N VAL B 65 O PHE B 122 SHEET 3 AA2 6 ASN B 21 ASP B 26 1 N VAL B 25 O ILE B 64 SHEET 4 AA2 6 VAL B 147 ILE B 150 1 O TRP B 148 N LEU B 22 SHEET 5 AA2 6 VAL B 164 PHE B 167 1 O SER B 165 N LEU B 149 SHEET 6 AA2 6 GLU B 174 TYR B 175 -1 O TYR B 175 N ARG B 166 LINK OD1 ASP A 130 MG MG A 302 1555 1555 2.15 LINK OD2 ASP A 130 MG MG A 303 1555 1555 2.24 LINK OD2 ASP A 153 MG MG A 303 1555 1555 2.40 LINK OD2 ASP A 155 MG MG A 303 1555 1555 2.51 LINK OD1 ASP A 155 MG MG A 304 1555 1555 2.70 LINK OD2 ASP A 201 MG MG A 304 1555 1555 2.28 LINK MG MG A 302 O HOH A 425 1555 1555 2.06 LINK MG MG A 302 O HOH A 438 1555 1555 2.08 LINK MG MG A 302 O HOH A 440 1555 1555 2.05 LINK MG MG A 302 O HOH A 524 1555 1555 1.96 LINK MG MG A 302 O HOH A 642 1555 1555 2.04 LINK MG MG A 303 O HOH A 524 1555 1555 1.89 LINK MG MG A 304 O HOH A 401 1555 1555 1.96 LINK MG MG A 304 O HOH A 418 1555 1555 2.15 LINK MG MG A 304 O HOH A 532 1555 1555 2.46 LINK MG MG A 304 O HOH A 556 1555 1555 2.16 LINK OD1 ASP B 87 MG MG B 303 1555 1555 2.17 LINK OD1 ASP B 130 MG MG B 301 1555 1555 2.16 LINK OD2 ASP B 201 MG MG B 302 1555 1555 2.24 LINK MG MG B 301 O HOH B 412 1555 1555 2.11 LINK MG MG B 301 O HOH B 429 1555 1555 2.03 LINK MG MG B 301 O HOH B 438 1555 1555 2.03 LINK MG MG B 301 O HOH B 462 1555 1555 2.08 LINK MG MG B 301 O HOH B 676 1555 1555 2.06 LINK MG MG B 302 O HOH B 449 1555 1555 2.10 LINK MG MG B 302 O HOH B 452 1555 1555 2.20 LINK MG MG B 302 O HOH B 506 1555 1555 2.37 LINK MG MG B 302 O HOH B 604 1555 1555 2.87 LINK MG MG B 302 O HOH B 682 1555 1555 1.86 LINK MG MG B 303 O HOH B 401 1555 1555 2.04 LINK MG MG B 303 O HOH B 418 1555 1555 2.13 LINK MG MG B 303 O HOH B 443 1555 1555 2.10 LINK MG MG B 303 O HOH B 594 1555 1555 2.12 LINK MG MG B 303 O HOH B 600 1555 1555 2.00 CISPEP 1 LEU A 234 PRO A 235 0 -1.50 CISPEP 2 LEU B 234 PRO B 235 0 -1.10 SITE 1 AC1 3 ARG A 216 LYS A 241 TYR A 242 SITE 1 AC2 7 ASP A 130 MG A 303 HOH A 425 HOH A 438 SITE 2 AC2 7 HOH A 440 HOH A 524 HOH A 642 SITE 1 AC3 5 ASP A 130 ASP A 153 ASP A 155 MG A 302 SITE 2 AC3 5 HOH A 524 SITE 1 AC4 6 ASP A 155 ASP A 201 HOH A 401 HOH A 418 SITE 2 AC4 6 HOH A 532 HOH A 556 SITE 1 AC5 2 GLY B 211 HOH B 459 SITE 1 AC6 2 ARG A 178 HOH A 640 SITE 1 AC7 6 ASP B 130 HOH B 412 HOH B 429 HOH B 438 SITE 2 AC7 6 HOH B 462 HOH B 676 SITE 1 AC8 6 ASP B 201 HOH B 449 HOH B 452 HOH B 506 SITE 2 AC8 6 HOH B 604 HOH B 682 SITE 1 AC9 6 ASP B 87 HOH B 401 HOH B 418 HOH B 443 SITE 2 AC9 6 HOH B 594 HOH B 600 SITE 1 AD1 4 HOH A 624 GLY B 213 ARG B 216 HOH B 686 SITE 1 AD2 2 ALA B 44 SER B 45 SITE 1 AD3 2 ARG A 222 HOH B 654 SITE 1 AD4 3 LYS B 239 HOH B 601 HOH B 633 CRYST1 46.831 58.591 59.729 66.88 79.40 73.78 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021353 -0.006211 -0.001878 0.00000 SCALE2 0.000000 0.017775 -0.006895 0.00000 SCALE3 0.000000 0.000000 0.018270 0.00000