HEADER HYDROLASE 18-JAN-16 5HNN TITLE CRYSTAL STRUCTURE OF THE ENDO-BETA-1,4-GLUCANASE (XAC0030) FROM TITLE 2 XANTHOMONAS AXONOPODIS PV. CITRI WITH THE TRIPLE MUTATION HIS174TRP, TITLE 3 TYR211ALA AND LYS227ARG. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: EGL, XAC0030; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ENDO-BETA-1, 4-GLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PAIVA,M.T.MURAKAMI REVDAT 4 27-SEP-23 5HNN 1 REMARK REVDAT 3 01-JAN-20 5HNN 1 REMARK REVDAT 2 17-APR-19 5HNN 1 REMARK REVDAT 1 25-JAN-17 5HNN 0 JRNL AUTH J.H.PAIVA,M.T.MURAKAMI JRNL TITL CRYSTAL STRUCTURE OF THE ENDO-BETA-1,4-GLUCANASE (XAC0030) JRNL TITL 2 FROM XANTHOMONAS AXONOPODIS PV. CITRI WITH THE TRIPLE JRNL TITL 3 MUTATION HIS174TRP, TYR211ALA AND LYS227ARG. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 104633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7672 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 7203 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10411 ; 1.330 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16596 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 955 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 333 ;39.233 ;24.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1254 ;13.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1090 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8756 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1798 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3814 ; 1.732 ; 1.957 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3813 ; 1.729 ; 1.957 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4771 ; 2.243 ; 2.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 14875 ; 1.272 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 196 ;28.163 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 15057 ; 8.581 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5HNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 41.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.780 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4W7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG4000 0.2 M SODIUM CHLORIDE 0.1 REMARK 280 M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.43500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 316 REMARK 465 LYS A 317 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 316 REMARK 465 LYS B 317 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 216 44.44 -84.82 REMARK 500 ALA A 281 -160.04 -124.48 REMARK 500 PHE B 24 -22.75 78.43 REMARK 500 ASP B 123 32.68 -89.59 REMARK 500 PRO B 216 27.64 -77.18 REMARK 500 ALA B 281 -160.27 -122.84 REMARK 500 ASP B 298 1.06 -69.77 REMARK 500 PHE C 24 -6.60 71.34 REMARK 500 ALA C 281 -163.40 -121.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 693 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 694 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 695 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 696 DISTANCE = 7.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HOS RELATED DB: PDB DBREF 5HNN A 2 317 UNP Q8PRD3 Q8PRD3_XANAC 42 357 DBREF 5HNN B 2 317 UNP Q8PRD3 Q8PRD3_XANAC 42 357 DBREF 5HNN C 2 317 UNP Q8PRD3 Q8PRD3_XANAC 42 357 SEQADV 5HNN MET A -19 UNP Q8PRD3 INITIATING METHIONINE SEQADV 5HNN GLY A -18 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER A -17 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER A -16 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -15 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -14 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -13 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -12 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -11 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A -10 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER A -9 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER A -8 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY A -7 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN LEU A -6 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN VAL A -5 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN PRO A -4 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN ARG A -3 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY A -2 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER A -1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS A 0 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN MET A 1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN TRP A 174 UNP Q8PRD3 HIS 214 ENGINEERED MUTATION SEQADV 5HNN ALA A 211 UNP Q8PRD3 TYR 251 ENGINEERED MUTATION SEQADV 5HNN ARG A 227 UNP Q8PRD3 LYS 267 ENGINEERED MUTATION SEQADV 5HNN MET B -19 UNP Q8PRD3 INITIATING METHIONINE SEQADV 5HNN GLY B -18 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER B -17 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER B -16 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -15 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -14 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -13 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -12 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -11 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B -10 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER B -9 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER B -8 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY B -7 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN LEU B -6 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN VAL B -5 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN PRO B -4 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN ARG B -3 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY B -2 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER B -1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS B 0 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN MET B 1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN TRP B 174 UNP Q8PRD3 HIS 214 ENGINEERED MUTATION SEQADV 5HNN ALA B 211 UNP Q8PRD3 TYR 251 ENGINEERED MUTATION SEQADV 5HNN ARG B 227 UNP Q8PRD3 LYS 267 ENGINEERED MUTATION SEQADV 5HNN MET C -19 UNP Q8PRD3 INITIATING METHIONINE SEQADV 5HNN GLY C -18 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER C -17 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER C -16 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -15 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -14 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -13 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -12 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -11 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C -10 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER C -9 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER C -8 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY C -7 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN LEU C -6 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN VAL C -5 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN PRO C -4 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN ARG C -3 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN GLY C -2 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN SER C -1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN HIS C 0 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN MET C 1 UNP Q8PRD3 EXPRESSION TAG SEQADV 5HNN TRP C 174 UNP Q8PRD3 HIS 214 ENGINEERED MUTATION SEQADV 5HNN ALA C 211 UNP Q8PRD3 TYR 251 ENGINEERED MUTATION SEQADV 5HNN ARG C 227 UNP Q8PRD3 LYS 267 ENGINEERED MUTATION SEQRES 1 A 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 337 LEU VAL PRO ARG GLY SER HIS MET LEU LYS TYR VAL GLY SEQRES 3 A 337 VAL ASN LEU SER GLY ALA GLU PHE ASN SER ARG LYS LYS SEQRES 4 A 337 PRO GLY THR LEU PHE LYS ASP TYR THR TYR PRO ALA ALA SEQRES 5 A 337 SER ASP PHE SER TYR PHE ALA GLY LYS GLY MET ASN THR SEQRES 6 A 337 ILE ARG LEU PRO PHE LEU TRP GLU ARG VAL GLN PRO GLU SEQRES 7 A 337 LEU ASN GLY PRO LEU ASP GLN ALA GLN LEU GLY LEU ILE SEQRES 8 A 337 LYS LYS SER LEU GLU ALA ALA LYS ALA ASN LYS GLN TYR SEQRES 9 A 337 LEU ILE LEU ASP LEU HIS ASN TYR ALA THR TYR SER GLY SEQRES 10 A 337 LYS ARG ILE GLY THR SER ASP VAL PRO ALA GLY ALA LEU SEQRES 11 A 337 ALA ASP LEU TRP ARG ARG LEU ALA LEU GLU PHE LYS ASP SEQRES 12 A 337 ASP LYS ALA VAL ILE PHE GLY LEU MET ASN GLU PRO ASN SEQRES 13 A 337 GLY ILE SER ALA PRO ASP TRP ALA ASN ALA ALA GLN GLY SEQRES 14 A 337 THR ILE THR ALA ILE ARG LYS THR GLY ALA LYS ASN LEU SEQRES 15 A 337 ILE LEU VAL PRO GLY THR ALA TYR THR GLY ALA TRP SER SEQRES 16 A 337 TRP ARG SER THR SER TYR GLY VAL SER ASN ALA LYS ALA SEQRES 17 A 337 LEU GLU ILE LEU LYS ASP PRO GLY ASN ASN LEU ALA PHE SEQRES 18 A 337 GLU ALA HIS GLN TYR LEU ASP LYS ASP ALA SER GLY THR SEQRES 19 A 337 LYS PRO VAL CYS THR SER ASP SER VAL GLY GLN GLU ARG SEQRES 20 A 337 LEU GLN GLY PHE THR SER TRP LEU ARG GLU ASN LYS GLN SEQRES 21 A 337 LYS GLY PHE LEU GLY GLU PHE ALA THR ALA ASN ASN PRO SEQRES 22 A 337 VAL CYS ASP LYS ALA LEU GLU GLY MET LEU THR TYR MET SEQRES 23 A 337 GLU LYS ASN SER ASP VAL TRP LEU GLY TRP THR TRP TRP SEQRES 24 A 337 ALA ALA GLY ALA TRP TRP LYS PRO ASP TYR PRO PHE THR SEQRES 25 A 337 VAL GLN PRO GLY LYS ASP GLY SER ASP LYS PRO GLN MET SEQRES 26 A 337 ALA ILE LEU SER LYS TYR ALA ARG ARG ALA GLY LYS SEQRES 1 B 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 337 LEU VAL PRO ARG GLY SER HIS MET LEU LYS TYR VAL GLY SEQRES 3 B 337 VAL ASN LEU SER GLY ALA GLU PHE ASN SER ARG LYS LYS SEQRES 4 B 337 PRO GLY THR LEU PHE LYS ASP TYR THR TYR PRO ALA ALA SEQRES 5 B 337 SER ASP PHE SER TYR PHE ALA GLY LYS GLY MET ASN THR SEQRES 6 B 337 ILE ARG LEU PRO PHE LEU TRP GLU ARG VAL GLN PRO GLU SEQRES 7 B 337 LEU ASN GLY PRO LEU ASP GLN ALA GLN LEU GLY LEU ILE SEQRES 8 B 337 LYS LYS SER LEU GLU ALA ALA LYS ALA ASN LYS GLN TYR SEQRES 9 B 337 LEU ILE LEU ASP LEU HIS ASN TYR ALA THR TYR SER GLY SEQRES 10 B 337 LYS ARG ILE GLY THR SER ASP VAL PRO ALA GLY ALA LEU SEQRES 11 B 337 ALA ASP LEU TRP ARG ARG LEU ALA LEU GLU PHE LYS ASP SEQRES 12 B 337 ASP LYS ALA VAL ILE PHE GLY LEU MET ASN GLU PRO ASN SEQRES 13 B 337 GLY ILE SER ALA PRO ASP TRP ALA ASN ALA ALA GLN GLY SEQRES 14 B 337 THR ILE THR ALA ILE ARG LYS THR GLY ALA LYS ASN LEU SEQRES 15 B 337 ILE LEU VAL PRO GLY THR ALA TYR THR GLY ALA TRP SER SEQRES 16 B 337 TRP ARG SER THR SER TYR GLY VAL SER ASN ALA LYS ALA SEQRES 17 B 337 LEU GLU ILE LEU LYS ASP PRO GLY ASN ASN LEU ALA PHE SEQRES 18 B 337 GLU ALA HIS GLN TYR LEU ASP LYS ASP ALA SER GLY THR SEQRES 19 B 337 LYS PRO VAL CYS THR SER ASP SER VAL GLY GLN GLU ARG SEQRES 20 B 337 LEU GLN GLY PHE THR SER TRP LEU ARG GLU ASN LYS GLN SEQRES 21 B 337 LYS GLY PHE LEU GLY GLU PHE ALA THR ALA ASN ASN PRO SEQRES 22 B 337 VAL CYS ASP LYS ALA LEU GLU GLY MET LEU THR TYR MET SEQRES 23 B 337 GLU LYS ASN SER ASP VAL TRP LEU GLY TRP THR TRP TRP SEQRES 24 B 337 ALA ALA GLY ALA TRP TRP LYS PRO ASP TYR PRO PHE THR SEQRES 25 B 337 VAL GLN PRO GLY LYS ASP GLY SER ASP LYS PRO GLN MET SEQRES 26 B 337 ALA ILE LEU SER LYS TYR ALA ARG ARG ALA GLY LYS SEQRES 1 C 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 337 LEU VAL PRO ARG GLY SER HIS MET LEU LYS TYR VAL GLY SEQRES 3 C 337 VAL ASN LEU SER GLY ALA GLU PHE ASN SER ARG LYS LYS SEQRES 4 C 337 PRO GLY THR LEU PHE LYS ASP TYR THR TYR PRO ALA ALA SEQRES 5 C 337 SER ASP PHE SER TYR PHE ALA GLY LYS GLY MET ASN THR SEQRES 6 C 337 ILE ARG LEU PRO PHE LEU TRP GLU ARG VAL GLN PRO GLU SEQRES 7 C 337 LEU ASN GLY PRO LEU ASP GLN ALA GLN LEU GLY LEU ILE SEQRES 8 C 337 LYS LYS SER LEU GLU ALA ALA LYS ALA ASN LYS GLN TYR SEQRES 9 C 337 LEU ILE LEU ASP LEU HIS ASN TYR ALA THR TYR SER GLY SEQRES 10 C 337 LYS ARG ILE GLY THR SER ASP VAL PRO ALA GLY ALA LEU SEQRES 11 C 337 ALA ASP LEU TRP ARG ARG LEU ALA LEU GLU PHE LYS ASP SEQRES 12 C 337 ASP LYS ALA VAL ILE PHE GLY LEU MET ASN GLU PRO ASN SEQRES 13 C 337 GLY ILE SER ALA PRO ASP TRP ALA ASN ALA ALA GLN GLY SEQRES 14 C 337 THR ILE THR ALA ILE ARG LYS THR GLY ALA LYS ASN LEU SEQRES 15 C 337 ILE LEU VAL PRO GLY THR ALA TYR THR GLY ALA TRP SER SEQRES 16 C 337 TRP ARG SER THR SER TYR GLY VAL SER ASN ALA LYS ALA SEQRES 17 C 337 LEU GLU ILE LEU LYS ASP PRO GLY ASN ASN LEU ALA PHE SEQRES 18 C 337 GLU ALA HIS GLN TYR LEU ASP LYS ASP ALA SER GLY THR SEQRES 19 C 337 LYS PRO VAL CYS THR SER ASP SER VAL GLY GLN GLU ARG SEQRES 20 C 337 LEU GLN GLY PHE THR SER TRP LEU ARG GLU ASN LYS GLN SEQRES 21 C 337 LYS GLY PHE LEU GLY GLU PHE ALA THR ALA ASN ASN PRO SEQRES 22 C 337 VAL CYS ASP LYS ALA LEU GLU GLY MET LEU THR TYR MET SEQRES 23 C 337 GLU LYS ASN SER ASP VAL TRP LEU GLY TRP THR TRP TRP SEQRES 24 C 337 ALA ALA GLY ALA TRP TRP LYS PRO ASP TYR PRO PHE THR SEQRES 25 C 337 VAL GLN PRO GLY LYS ASP GLY SER ASP LYS PRO GLN MET SEQRES 26 C 337 ALA ILE LEU SER LYS TYR ALA ARG ARG ALA GLY LYS HET GOL A 401 6 HET GOL B 401 6 HET GOL C 401 12 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *581(H2 O) HELIX 1 AA1 ALA A 31 LYS A 41 1 11 HELIX 2 AA2 LEU A 51 GLN A 56 1 6 HELIX 3 AA3 ASP A 64 ASN A 81 1 18 HELIX 4 AA4 PRO A 106 LYS A 122 1 17 HELIX 5 AA5 SER A 139 THR A 157 1 19 HELIX 6 AA6 THR A 168 GLY A 172 5 5 HELIX 7 AA7 SER A 184 GLU A 190 1 7 HELIX 8 AA8 SER A 222 LYS A 239 1 18 HELIX 9 AA9 ASN A 252 ASN A 269 1 18 HELIX 10 AB1 GLN A 304 ALA A 315 1 12 HELIX 11 AB2 ALA B 31 LYS B 41 1 11 HELIX 12 AB3 LEU B 51 GLN B 56 1 6 HELIX 13 AB4 ASP B 64 ASN B 81 1 18 HELIX 14 AB5 PRO B 106 LYS B 122 1 17 HELIX 15 AB6 SER B 139 THR B 157 1 19 HELIX 16 AB7 THR B 168 GLY B 172 5 5 HELIX 17 AB8 SER B 184 LEU B 189 1 6 HELIX 18 AB9 GLU B 190 LEU B 192 5 3 HELIX 19 AC1 SER B 222 LYS B 239 1 18 HELIX 20 AC2 ASN B 252 ASN B 269 1 18 HELIX 21 AC3 GLN B 304 ALA B 315 1 12 HELIX 22 AC4 ALA C 31 LYS C 41 1 11 HELIX 23 AC5 LEU C 51 GLN C 56 1 6 HELIX 24 AC6 ASP C 64 ASN C 81 1 18 HELIX 25 AC7 PRO C 106 LYS C 122 1 17 HELIX 26 AC8 SER C 139 THR C 157 1 19 HELIX 27 AC9 THR C 168 GLY C 172 5 5 HELIX 28 AD1 SER C 184 LEU C 189 1 6 HELIX 29 AD2 GLU C 190 LEU C 192 5 3 HELIX 30 AD3 SER C 222 LYS C 239 1 18 HELIX 31 AD4 ASN C 252 ASN C 269 1 18 HELIX 32 AD5 GLN C 304 ALA C 315 1 12 SHEET 1 AA1 9 TYR A 4 LEU A 9 0 SHEET 2 AA1 9 THR A 45 PHE A 50 1 O ARG A 47 N LEU A 9 SHEET 3 AA1 9 TYR A 84 LEU A 89 1 O ILE A 86 N ILE A 46 SHEET 4 AA1 9 VAL A 127 GLY A 130 1 O ILE A 128 N LEU A 87 SHEET 5 AA1 9 ILE A 163 PRO A 166 1 O LEU A 164 N PHE A 129 SHEET 6 AA1 9 LEU A 199 TYR A 206 1 O ALA A 200 N VAL A 165 SHEET 7 AA1 9 GLY A 242 ALA A 248 1 O GLU A 246 N GLN A 205 SHEET 8 AA1 9 TRP A 273 ALA A 281 1 O LEU A 274 N GLY A 242 SHEET 9 AA1 9 TYR A 4 LEU A 9 1 N ASN A 8 O ALA A 281 SHEET 1 AA2 2 THR A 94 TYR A 95 0 SHEET 2 AA2 2 LYS A 98 ARG A 99 -1 O LYS A 98 N TYR A 95 SHEET 1 AA3 9 TYR B 4 LEU B 9 0 SHEET 2 AA3 9 THR B 45 PHE B 50 1 O ARG B 47 N LEU B 9 SHEET 3 AA3 9 TYR B 84 LEU B 89 1 O ILE B 86 N ILE B 46 SHEET 4 AA3 9 VAL B 127 GLY B 130 1 O ILE B 128 N LEU B 87 SHEET 5 AA3 9 ILE B 163 PRO B 166 1 O LEU B 164 N PHE B 129 SHEET 6 AA3 9 LEU B 199 TYR B 206 1 O ALA B 200 N VAL B 165 SHEET 7 AA3 9 GLY B 242 ALA B 248 1 O PHE B 243 N PHE B 201 SHEET 8 AA3 9 TRP B 273 ALA B 281 1 O LEU B 274 N GLY B 242 SHEET 9 AA3 9 TYR B 4 LEU B 9 1 N ASN B 8 O ALA B 281 SHEET 1 AA4 2 THR B 94 TYR B 95 0 SHEET 2 AA4 2 LYS B 98 ARG B 99 -1 O LYS B 98 N TYR B 95 SHEET 1 AA5 9 TYR C 4 LEU C 9 0 SHEET 2 AA5 9 THR C 45 PHE C 50 1 O ARG C 47 N LEU C 9 SHEET 3 AA5 9 TYR C 84 LEU C 89 1 O ILE C 86 N ILE C 46 SHEET 4 AA5 9 VAL C 127 GLY C 130 1 O ILE C 128 N LEU C 87 SHEET 5 AA5 9 ILE C 163 PRO C 166 1 O LEU C 164 N PHE C 129 SHEET 6 AA5 9 LEU C 199 TYR C 206 1 O ALA C 200 N VAL C 165 SHEET 7 AA5 9 GLY C 242 ALA C 248 1 O PHE C 243 N PHE C 201 SHEET 8 AA5 9 TRP C 273 ALA C 281 1 O LEU C 274 N GLY C 242 SHEET 9 AA5 9 TYR C 4 LEU C 9 1 N ASN C 8 O ALA C 281 SHEET 1 AA6 2 THR C 94 TYR C 95 0 SHEET 2 AA6 2 LYS C 98 ARG C 99 -1 O LYS C 98 N TYR C 95 SSBOND 1 CYS A 218 CYS A 255 1555 1555 2.12 SSBOND 2 CYS B 218 CYS B 255 1555 1555 2.10 SSBOND 3 CYS C 218 CYS C 255 1555 1555 2.10 CISPEP 1 LYS A 19 PRO A 20 0 0.61 CISPEP 2 TRP A 279 ALA A 280 0 1.28 CISPEP 3 LYS B 19 PRO B 20 0 3.95 CISPEP 4 TRP B 279 ALA B 280 0 1.72 CISPEP 5 LYS C 19 PRO C 20 0 0.47 CISPEP 6 TRP C 279 ALA C 280 0 5.15 SITE 1 AC1 6 TYR A 92 GLU A 134 GLU A 246 TRP A 279 SITE 2 AC1 6 HOH A 520 HOH A 550 SITE 1 AC2 8 TYR B 92 GLU B 134 GLU B 246 TRP B 279 SITE 2 AC2 8 HOH B 501 HOH B 504 HOH B 507 HOH B 511 SITE 1 AC3 8 HIS C 90 TYR C 92 ASN C 133 GLU C 134 SITE 2 AC3 8 TYR C 206 GLU C 246 TRP C 279 HOH C 516 CRYST1 48.554 76.870 128.942 90.00 98.70 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020596 0.000000 0.003153 0.00000 SCALE2 0.000000 0.013009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007846 0.00000