HEADER HYDROLASE 19-JAN-16 5HOF TITLE CRYSTAL STRUCTURE OF ABNA, A GH43 EXTRACELLULAR ARABINANASE FROM TITLE 2 GEOBACILLUS STEAROTHERMOPHILUS, IN COMPLEX WITH ARABINOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR ARABINANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GH43 ARABINANASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: ABNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GH43, ARABINANASE, GEOBACILLUS STEAROTHERMOPHILUS, ARABINOPENTAOSE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LANSKY,O.SHWARTSTIEN,R.SALAMA,Y.SHOHAM,G.SHOHAM REVDAT 3 10-JAN-24 5HOF 1 HETSYN LINK REVDAT 2 29-JUL-20 5HOF 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 01-FEB-17 5HOF 0 JRNL AUTH S.LANSKY,O.SHWARTSTIEN,R.SALAMA,Y.SHOHAM,G.SHOHAM JRNL TITL CRYSTAL STRUCTURE OF ABNA, A GH43 EXTRACELLULAR ARABINANASE JRNL TITL 2 FROM GEOBACILLUS STEAROTHERMOPHILUS, IN COMPLEX WITH JRNL TITL 3 ARABINOPENTAOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 1.17000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.493 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.357 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6615 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5964 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9017 ; 1.602 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13768 ; 0.820 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 818 ; 7.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 315 ;39.529 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1013 ;17.986 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 953 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7607 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1587 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3230 ; 1.862 ; 3.244 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3226 ; 1.860 ; 3.242 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4036 ; 3.026 ; 4.860 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4037 ; 3.027 ; 4.861 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 1.873 ; 3.435 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3386 ; 1.873 ; 3.435 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4974 ; 3.085 ; 5.082 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7671 ; 5.219 ;26.204 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7656 ; 5.204 ;26.230 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HO2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17%-19% PEG 6K, 0.2M NACL, 0.1M HEPES REMARK 280 BUFFER, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.22950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.89300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.22950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.89300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 CYS A 19 REMARK 465 LEU A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 LEU A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 HIS A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 ASN A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 ASN A 40 REMARK 465 GLN A 41 REMARK 465 LYS A 42 REMARK 465 VAL A 43 REMARK 465 SER A 847 REMARK 465 GLU A 848 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 60.42 69.89 REMARK 500 ASP A 63 42.02 -101.74 REMARK 500 MET A 81 -51.29 -134.89 REMARK 500 ASN A 95 130.24 -38.33 REMARK 500 ALA A 117 -114.10 38.86 REMARK 500 ILE A 157 -32.22 -136.96 REMARK 500 ILE A 169 -36.84 -39.54 REMARK 500 VAL A 176 -51.56 -128.61 REMARK 500 HIS A 223 -161.92 -74.12 REMARK 500 ALA A 236 73.93 -100.74 REMARK 500 ASP A 244 -165.94 -109.87 REMARK 500 SER A 255 108.34 -161.53 REMARK 500 TRP A 256 -154.24 63.02 REMARK 500 SER A 257 -146.29 51.31 REMARK 500 ARG A 289 -32.40 -33.08 REMARK 500 TYR A 299 53.41 39.77 REMARK 500 HIS A 395 72.86 52.06 REMARK 500 ALA A 445 33.87 -148.88 REMARK 500 GLU A 447 170.87 -54.16 REMARK 500 SER A 471 -169.69 -164.63 REMARK 500 ASN A 485 32.91 -91.48 REMARK 500 ASN A 502 -16.74 -142.85 REMARK 500 ASP A 509 64.22 32.08 REMARK 500 HIS A 570 56.30 -143.43 REMARK 500 ASP A 593 109.09 -161.57 REMARK 500 PRO A 606 170.23 -56.65 REMARK 500 SER A 658 -8.39 -54.60 REMARK 500 SER A 706 26.98 -148.63 REMARK 500 HIS A 724 -29.57 85.65 REMARK 500 THR A 727 -85.70 -118.34 REMARK 500 ASN A 781 79.10 12.72 REMARK 500 THR A 804 -81.27 -98.14 REMARK 500 ALA A 806 -131.03 -176.04 REMARK 500 ASN A 815 -135.29 -139.61 REMARK 500 TRP A 817 -38.98 -132.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1142 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 649 O REMARK 620 2 ASP A 651 OD1 76.2 REMARK 620 3 ILE A 686 O 159.7 86.3 REMARK 620 4 LYS A 688 O 83.7 84.3 105.1 REMARK 620 5 ASP A 826 OD1 90.5 159.3 109.1 78.4 REMARK 620 6 GLU A 827 OE2 89.0 102.2 84.6 168.8 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1004 O REMARK 620 2 HOH A1018 O 143.6 REMARK 620 3 HOH A1020 O 145.1 67.0 REMARK 620 4 HOH A1022 O 73.4 142.7 76.4 REMARK 620 5 HOH A1040 O 76.4 67.4 126.3 147.2 REMARK 620 6 HOH A1085 O 82.2 94.2 78.3 85.2 78.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HO0 RELATED DB: PDB REMARK 900 RELATED ID: 5HO2 RELATED DB: PDB REMARK 900 RELATED ID: 5HO9 RELATED DB: PDB DBREF 5HOF A 1 848 UNP B3EYN2 B3EYN2_GEOSE 1 848 SEQRES 1 A 848 MET LYS ARG ARG SER LEU LYS GLY ILE ALA LEU PHE LEU SEQRES 2 A 848 LEU ILE VAL ALA VAL CYS LEU SER SER ALA THR LEU GLY SEQRES 3 A 848 ARG GLY GLU GLU LYS HIS THR GLY GLU ASN VAL ARG GLN SEQRES 4 A 848 ASN GLN LYS VAL LYS ASP PRO GLN PHE THR ASN VAL SER SEQRES 5 A 848 VAL HIS ASP PRO SER ILE VAL LYS ASP GLY ASP THR TYR SEQRES 6 A 848 TYR ILE PHE GLY SER HIS ILE GLU ALA ALA LYS SER LYS SEQRES 7 A 848 ASP LEU MET ASN TRP GLU LYS PHE THR ASN GLY TYR THR SEQRES 8 A 848 THR PRO ASN ASN LYS LEU TYR GLY ASP LEU SER LYS ASN SEQRES 9 A 848 LEU ALA GLY SER PHE LYS TRP ALA GLY GLU ASN ASP ALA SEQRES 10 A 848 ASP SER LYS GLY GLY PHE ALA VAL TRP ALA PRO ASP VAL SEQRES 11 A 848 PHE TRP ASN LYS ASP TYR VAL ASN GLU ASP GLY THR LYS SEQRES 12 A 848 GLY ALA TYR MET ILE TYR TYR SER VAL SER SER THR TYR SEQRES 13 A 848 ILE ARG SER ALA ILE GLY TYR ALA VAL SER LYS HIS ILE SEQRES 14 A 848 GLU GLY PRO TYR LYS TYR VAL ASP THR ILE VAL TYR SER SEQRES 15 A 848 GLY PHE THR LYS GLU GLU ALA TYR ASP ALA ASN SER LYS SEQRES 16 A 848 ILE ASN LYS LYS TRP THR ASN THR ASN ILE PRO LYS LEU SEQRES 17 A 848 ILE GLU GLN GLY LYS LEU LYS GLY VAL ARG ALA ASP TRP SEQRES 18 A 848 PHE HIS ASN ASP GLY SER TYR ASN ASN ARG ASP PHE PRO SEQRES 19 A 848 ASN ALA ILE ASP PRO ASN LEU PHE TYR ASP GLU LYS GLY SEQRES 20 A 848 ASN LEU TRP MET ALA TYR GLY SER TRP SER GLY GLY ILE SEQRES 21 A 848 PHE VAL LEU PRO MET ASP LYS THR THR GLY LYS PRO ILE SEQRES 22 A 848 TYR PRO GLY LYS ASP GLY LYS THR PRO ASP GLY ARG LEU SEQRES 23 A 848 VAL ASP ARG TYR PHE GLY ILE LYS ILE ALA GLY GLY TYR SEQRES 24 A 848 TYR GLN SER GLY GLU GLY THR TYR ILE VAL TYR ASP LYS SEQRES 25 A 848 ASN THR ASP TYR TYR TYR LEU TYR VAL THR TYR GLY TRP SEQRES 26 A 848 LEU GLY ALA ASP GLY GLY TYR ASN MET ARG GLN PHE ARG SEQRES 27 A 848 SER THR SER PRO THR GLY PRO TYR VAL ASP ALA LYS GLY SEQRES 28 A 848 GLN SER ALA VAL LEU PRO GLY GLU VAL ASP ASN SER PRO SEQRES 29 A 848 TYR GLY ASN LYS ILE MET GLY ASN PHE LEU PHE GLU ARG SEQRES 30 A 848 LYS VAL GLY ASP PRO GLY THR GLY ILE GLY VAL GLY TYR SEQRES 31 A 848 VAL SER PRO GLY HIS ASN SER VAL TYR LEU ASP ARG LYS SEQRES 32 A 848 THR GLY GLN GLN PHE LEU VAL PHE HIS THR ARG PHE PRO SEQRES 33 A 848 GLN SER GLY GLU TYR HIS GLU VAL ARG VAL HIS GLN MET SEQRES 34 A 848 PHE MET ASN LYS ASN GLY TRP PRO VAL VAL ALA PRO TYR SEQRES 35 A 848 ARG TYR ALA GLY GLU LYS LEU GLU LYS VAL ASN LYS GLN SEQRES 36 A 848 ASP VAL VAL GLY GLU TYR GLN LEU ILE ASN HIS GLY LYS SEQRES 37 A 848 ASP TYR SER ALA ASP ILE LYS LYS GLN ILE PHE VAL ARG SEQRES 38 A 848 LEU ASN ARG ASN ASN THR ILE SER GLY ASP ALA THR GLY SEQRES 39 A 848 THR TRP ARG LYS ILE GLY HIS ASN GLN ALA GLU ILE THR SEQRES 40 A 848 ILE ASP GLY GLU THR TYR ASP GLY VAL PHE VAL ARG GLN SEQRES 41 A 848 TRP ASP PRO THR SER LYS ARG TYR VAL MET ALA PHE THR SEQRES 42 A 848 ALA LEU SER ASN GLU GLY VAL SER ILE TRP GLY SER LYS SEQRES 43 A 848 LEU ALA ASP LYS THR ASP GLU GLU ILE VAL GLU ASP VAL SEQRES 44 A 848 ALA SER ASP LEU ASP LEU GLY ASP THR ASP HIS VAL VAL SEQRES 45 A 848 SER ASN LEU HIS LEU PRO THR GLU GLY THR ARG HIS THR SEQRES 46 A 848 VAL ILE SER TRP THR THR SER ASP ALA LYS VAL VAL SER SEQRES 47 A 848 GLU THR GLY VAL VAL HIS ARG PRO GLU VAL GLY SER ALA SEQRES 48 A 848 PRO VAL THR ALA THR LEU THR ALA THR ILE THR LYS GLY SEQRES 49 A 848 ASP ALA THR ALA THR LYS VAL PHE HIS ILE THR VAL LEU SEQRES 50 A 848 PRO TYR GLU GLU ALA LYS LEU THR ALA HIS TYR SER PHE SEQRES 51 A 848 ASP ASN ASN ASP LEU SER ASP SER THR GLY ASN PHE GLY SEQRES 52 A 848 PRO GLY THR ILE THR GLY ASN ARG ILE ASP ASN GLU GLY SEQRES 53 A 848 GLY THR ILE ALA TYR ALA ASP GLY LYS ILE GLY LYS ALA SEQRES 54 A 848 ALA VAL LEU ASN GLY GLN SER GLY ILE ARG LEU PRO ASP SEQRES 55 A 848 GLY LEU VAL SER SER ASN GLN TYR SER VAL SER LEU TRP SEQRES 56 A 848 VAL LYS PRO GLU GLN LEU THR THR HIS THR THR THR PHE SEQRES 57 A 848 PHE GLY ALA LYS ASP PRO ASN HIS TRP ILE SER LEU VAL SEQRES 58 A 848 PRO GLN GLY TRP ASP GLY ASN THR MET LEU TRP SER GLY SEQRES 59 A 848 SER SER PRO TRP TYR ASP GLY ARG THR PHE TRP LYS ILE SEQRES 60 A 848 PRO THR GLY GLN TRP THR HIS LEU ALA PHE SER VAL ASP SEQRES 61 A 848 ASN GLY ALA VAL LYS VAL TYR ILE ASN GLY VAL GLU LYS SEQRES 62 A 848 PHE SER GLY THR ASN PHE PRO ASP VAL PHE THR GLY ALA SEQRES 63 A 848 ASN ALA SER PHE ALA LEU GLY VAL ASN TRP TRP ASP PRO SEQRES 64 A 848 PRO PHE LYS GLY LEU ILE ASP GLU LEU ARG ILE TYR GLU SEQRES 65 A 848 GLY ALA LEU THR PRO SER GLN VAL THR ASP LEU ALA GLN SEQRES 66 A 848 THR SER GLU HET AHR B 1 10 HET AHR B 2 9 HET AHR B 3 9 HET AHR B 4 9 HET AHR B 5 9 HET CA A 901 1 HET CA A 902 1 HET TRS A 903 8 HET PEG A 904 7 HET ACT A 905 4 HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETSYN AHR ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN TRS TRIS BUFFER FORMUL 2 AHR 5(C5 H10 O5) FORMUL 3 CA 2(CA 2+) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 PEG C4 H10 O3 FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *142(H2 O) HELIX 1 AA1 ASP A 100 LEU A 105 1 6 HELIX 2 AA2 LEU A 105 LYS A 110 1 6 HELIX 3 AA3 ASP A 116 LYS A 120 5 5 HELIX 4 AA4 LYS A 199 THR A 203 5 5 HELIX 5 AA5 ASN A 204 GLN A 211 1 8 HELIX 6 AA6 ARG A 218 PHE A 222 5 5 HELIX 7 AA7 GLY A 327 GLY A 331 5 5 HELIX 8 AA8 ASN A 453 VAL A 458 1 6 HELIX 9 AA9 THR A 551 LEU A 563 1 13 HELIX 10 AB1 THR A 582 HIS A 584 5 3 HELIX 11 AB2 THR A 836 GLN A 845 1 10 SHEET 1 AA1 4 SER A 57 ASP A 61 0 SHEET 2 AA1 4 THR A 64 PHE A 68 -1 O PHE A 68 N SER A 57 SHEET 3 AA1 4 ALA A 74 SER A 77 -1 O SER A 77 N TYR A 65 SHEET 4 AA1 4 GLU A 84 LYS A 85 -1 O GLU A 84 N LYS A 76 SHEET 1 AA2 4 VAL A 125 VAL A 137 0 SHEET 2 AA2 4 LYS A 143 SER A 153 -1 O ALA A 145 N ASN A 133 SHEET 3 AA2 4 SER A 159 SER A 166 -1 O ALA A 164 N ILE A 148 SHEET 4 AA2 4 LYS A 174 SER A 182 -1 O ILE A 179 N ILE A 161 SHEET 1 AA3 6 ASN A 240 TYR A 243 0 SHEET 2 AA3 6 LEU A 249 TYR A 253 -1 O TRP A 250 N PHE A 242 SHEET 3 AA3 6 ILE A 260 MET A 265 -1 O LEU A 263 N MET A 251 SHEET 4 AA3 6 GLY A 292 ALA A 296 -1 O ILE A 295 N ILE A 260 SHEET 5 AA3 6 LEU A 286 ASP A 288 -1 N LEU A 286 O LYS A 294 SHEET 6 AA3 6 GLY A 279 LYS A 280 -1 N GLY A 279 O VAL A 287 SHEET 1 AA4 4 GLU A 304 ASP A 311 0 SHEET 2 AA4 4 TYR A 316 TYR A 323 -1 O TYR A 320 N TYR A 307 SHEET 3 AA4 4 ASN A 333 SER A 339 -1 O SER A 339 N TYR A 317 SHEET 4 AA4 4 ASN A 367 MET A 370 -1 O ASN A 367 N GLN A 336 SHEET 1 AA5 6 PRO A 437 VAL A 439 0 SHEET 2 AA5 6 GLU A 423 MET A 431 -1 N PHE A 430 O VAL A 438 SHEET 3 AA5 6 GLN A 407 ARG A 414 -1 N PHE A 411 O ARG A 425 SHEET 4 AA5 6 GLY A 389 LEU A 400 -1 N GLY A 394 O HIS A 412 SHEET 5 AA5 6 PHE A 373 LEU A 374 -1 N PHE A 373 O TYR A 390 SHEET 6 AA5 6 LYS A 475 LYS A 476 1 O LYS A 475 N LEU A 374 SHEET 1 AA6 9 GLY A 459 ASN A 465 0 SHEET 2 AA6 9 ILE A 478 LEU A 482 -1 O LEU A 482 N GLY A 459 SHEET 3 AA6 9 THR A 487 GLY A 490 -1 O SER A 489 N ARG A 481 SHEET 4 AA6 9 GLY A 494 ILE A 499 -1 O GLY A 494 N ILE A 488 SHEET 5 AA6 9 GLN A 503 ILE A 508 -1 O GLU A 505 N ARG A 497 SHEET 6 AA6 9 GLU A 511 PHE A 517 -1 O TYR A 513 N ILE A 506 SHEET 7 AA6 9 ALA A 531 LEU A 535 -1 O LEU A 535 N ASP A 514 SHEET 8 AA6 9 SER A 541 LYS A 546 -1 O GLY A 544 N PHE A 532 SHEET 9 AA6 9 GLY A 459 ASN A 465 -1 N GLN A 462 O SER A 545 SHEET 1 AA7 2 GLN A 520 ASP A 522 0 SHEET 2 AA7 2 ARG A 527 VAL A 529 -1 O VAL A 529 N GLN A 520 SHEET 1 AA8 4 GLU A 580 GLY A 581 0 SHEET 2 AA8 4 THR A 585 THR A 591 -1 O THR A 585 N GLY A 581 SHEET 3 AA8 4 VAL A 613 LYS A 623 -1 O THR A 620 N SER A 588 SHEET 4 AA8 4 ALA A 626 VAL A 636 -1 O ILE A 634 N ALA A 615 SHEET 1 AA9 4 LYS A 643 TYR A 648 0 SHEET 2 AA9 4 LYS A 822 GLU A 832 -1 O ILE A 830 N ALA A 646 SHEET 3 AA9 4 LYS A 688 ASN A 693 -1 N LEU A 692 O GLY A 823 SHEET 4 AA9 4 ILE A 679 ASP A 683 -1 N ALA A 682 O ALA A 689 SHEET 1 AB1 6 LYS A 643 TYR A 648 0 SHEET 2 AB1 6 LYS A 822 GLU A 832 -1 O ILE A 830 N ALA A 646 SHEET 3 AB1 6 GLN A 709 PRO A 718 -1 N TRP A 715 O ASP A 826 SHEET 4 AB1 6 THR A 773 ASP A 780 -1 O LEU A 775 N LEU A 714 SHEET 5 AB1 6 ALA A 783 ILE A 788 -1 O ALA A 783 N ASP A 780 SHEET 6 AB1 6 VAL A 791 GLY A 796 -1 O LYS A 793 N VAL A 786 SHEET 1 AB2 7 THR A 666 THR A 668 0 SHEET 2 AB2 7 GLY A 697 LEU A 700 -1 O ARG A 699 N THR A 666 SHEET 3 AB2 7 SER A 809 LEU A 812 -1 O PHE A 810 N LEU A 700 SHEET 4 AB2 7 PHE A 728 ASP A 733 -1 N ALA A 731 O SER A 809 SHEET 5 AB2 7 HIS A 736 VAL A 741 -1 O ILE A 738 N GLY A 730 SHEET 6 AB2 7 MET A 750 SER A 755 -1 O TRP A 752 N SER A 739 SHEET 7 AB2 7 TYR A 759 ARG A 762 -1 O GLY A 761 N LEU A 751 LINK O5 AHR B 1 C1 AHR B 2 1555 1555 1.43 LINK O5 AHR B 2 C1 AHR B 3 1555 1555 1.44 LINK O5 AHR B 3 C1 AHR B 4 1555 1555 1.42 LINK O5 AHR B 4 C1 AHR B 5 1555 1555 1.45 LINK O SER A 649 CA CA A 902 1555 1555 2.41 LINK OD1 ASP A 651 CA CA A 902 1555 1555 2.32 LINK O ILE A 686 CA CA A 902 1555 1555 2.36 LINK O LYS A 688 CA CA A 902 1555 1555 2.37 LINK OD1 ASP A 826 CA CA A 902 1555 1555 2.37 LINK OE2 GLU A 827 CA CA A 902 1555 1555 2.05 LINK CA CA A 901 O HOH A1004 1555 1555 2.72 LINK CA CA A 901 O HOH A1018 1555 1555 2.63 LINK CA CA A 901 O HOH A1020 1555 1555 2.15 LINK CA CA A 901 O HOH A1022 1555 1555 2.50 LINK CA CA A 901 O HOH A1040 1555 1555 2.27 LINK CA CA A 901 O HOH A1085 1555 1555 2.09 CISPEP 1 THR A 92 PRO A 93 0 -3.42 CISPEP 2 GLY A 171 PRO A 172 0 -9.36 CISPEP 3 GLY A 344 PRO A 345 0 -4.30 CISPEP 4 GLY A 754 SER A 755 0 -16.04 CISPEP 5 SER A 756 PRO A 757 0 4.43 CRYST1 70.459 87.786 129.908 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007698 0.00000