HEADER TRANSFERASE/INHIBITOR 19-JAN-16 5HOT TITLE STRUCTURAL BASIS FOR INHIBITOR-INDUCED AGGREGATION OF HIV-1 INTEGRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEGRASE, INHIBITOR COMPLEX, NUCLEIC ACID BINDING, DNA INTEGRATION, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GUPTA,V.TURKKI,S.SHERRILL-MIX,Y.HWANG,G.EILERS,L.TAYLOR,C.MCDANAL, AUTHOR 2 P.WANG,D.TEMELKOFF,R.NOLTE,E.VELTHUISEN,J.JEFFREY,G.D.VAN DUYNE, AUTHOR 3 F.D.BUSHMAN REVDAT 5 27-SEP-23 5HOT 1 REMARK REVDAT 4 11-DEC-19 5HOT 1 REMARK REVDAT 3 27-SEP-17 5HOT 1 REMARK REVDAT 2 21-DEC-16 5HOT 1 JRNL REVDAT 1 14-DEC-16 5HOT 0 JRNL AUTH K.GUPTA,V.TURKKI,S.SHERRILL-MIX,Y.HWANG,G.EILERS,L.TAYLOR, JRNL AUTH 2 C.MCDANAL,P.WANG,D.TEMELKOFF,R.T.NOLTE,E.VELTHUISEN, JRNL AUTH 3 J.JEFFREY,G.D.VAN DUYNE,F.D.BUSHMAN JRNL TITL STRUCTURAL BASIS FOR INHIBITOR-INDUCED AGGREGATION OF HIV JRNL TITL 2 INTEGRASE. JRNL REF PLOS BIOL. V. 14 02584 2016 JRNL REFN ESSN 1545-7885 JRNL PMID 27935939 JRNL DOI 10.1371/JOURNAL.PBIO.1002584 REMARK 2 REMARK 2 RESOLUTION. 4.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 5396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.309 REMARK 3 FREE R VALUE : 0.358 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 539 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 280 REMARK 3 BIN R VALUE (WORKING SET) : 0.4108 REMARK 3 BIN FREE R VALUE : 0.4192 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 31 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 180.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 241.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.31300 REMARK 3 B22 (A**2) : 27.31300 REMARK 3 B33 (A**2) : -54.62700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 15.951; 15.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 24.774; 20.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 19.675; 25.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 29.001; 30.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 154.0 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : DRGCNS.PAR REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.6-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5518 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.340 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 5.010 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4OJR, 1EX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% 2-METHYL-2,4 PENTANEDIOL (MPD), REMARK 280 0.1 M SODIUM CITRATE PH 5.6 - 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.16333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.32667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.74500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 202.90833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.58167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.16333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 162.32667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 202.90833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.74500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.58167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -53.53000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -92.71668 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -284.07167 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ILE A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 HIS A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 TRP A 19 REMARK 465 ARG A 20 REMARK 465 ALA A 21 REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 PHE A 26 REMARK 465 ASN A 27 REMARK 465 LEU A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 GLU A 35 REMARK 465 ILE A 36 REMARK 465 VAL A 37 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 465 CYS A 40 REMARK 465 ASP A 41 REMARK 465 LYS A 42 REMARK 465 CYS A 43 REMARK 465 GLN A 44 REMARK 465 LEU A 45 REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 GLU A 48 REMARK 465 ALA A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 ALA A 276 REMARK 465 GLY A 277 REMARK 465 ASP A 278 REMARK 465 ASP A 279 REMARK 465 CYS A 280 REMARK 465 VAL A 281 REMARK 465 ALA A 282 REMARK 465 SER A 283 REMARK 465 ARG A 284 REMARK 465 GLN A 285 REMARK 465 ASP A 286 REMARK 465 GLU A 287 REMARK 465 ASP A 288 REMARK 465 LEU A 289 REMARK 465 GLU A 290 REMARK 465 TYR A 291 REMARK 465 HIS B 1 REMARK 465 LEU B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 ILE B 5 REMARK 465 ASP B 6 REMARK 465 LYS B 7 REMARK 465 ALA B 8 REMARK 465 GLN B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 HIS B 12 REMARK 465 GLU B 13 REMARK 465 LYS B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 SER B 17 REMARK 465 ASN B 18 REMARK 465 TRP B 19 REMARK 465 ARG B 20 REMARK 465 ALA B 21 REMARK 465 MET B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 PHE B 26 REMARK 465 ASN B 27 REMARK 465 LEU B 28 REMARK 465 PRO B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 VAL B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 34 REMARK 465 GLU B 35 REMARK 465 ILE B 36 REMARK 465 VAL B 37 REMARK 465 ALA B 38 REMARK 465 SER B 39 REMARK 465 CYS B 40 REMARK 465 ASP B 41 REMARK 465 LYS B 42 REMARK 465 CYS B 43 REMARK 465 GLN B 44 REMARK 465 LEU B 45 REMARK 465 LYS B 46 REMARK 465 GLY B 47 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 PHE B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 PRO B 142 REMARK 465 TYR B 143 REMARK 465 LYS B 188 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 GLY B 277 REMARK 465 ASP B 278 REMARK 465 ASP B 279 REMARK 465 CYS B 280 REMARK 465 VAL B 281 REMARK 465 ALA B 282 REMARK 465 SER B 283 REMARK 465 ARG B 284 REMARK 465 GLN B 285 REMARK 465 ASP B 286 REMARK 465 GLU B 287 REMARK 465 ASP B 288 REMARK 465 LEU B 289 REMARK 465 GLU B 290 REMARK 465 TYR B 291 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 69 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 79 N VAL A 79 CA 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 79 C - N - CA ANGL. DEV. = 22.8 DEGREES REMARK 500 VAL A 79 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 69 130.42 -38.10 REMARK 500 LYS A 71 -162.15 -106.24 REMARK 500 GLU A 85 55.27 -149.68 REMARK 500 PRO A 109 86.11 -68.29 REMARK 500 THR A 115 142.06 -172.48 REMARK 500 GLU A 138 72.90 -107.74 REMARK 500 LYS A 156 -71.86 -47.04 REMARK 500 GLN A 164 -3.92 -57.73 REMARK 500 VAL A 165 -13.15 -142.54 REMARK 500 ARG A 187 108.28 -45.76 REMARK 500 ARG A 199 -170.73 56.58 REMARK 500 ASP A 229 124.88 -36.26 REMARK 500 ARG A 231 45.19 70.46 REMARK 500 LEU A 242 -36.12 -131.35 REMARK 500 ASN A 254 -71.45 -139.25 REMARK 500 LYS A 264 21.54 -71.60 REMARK 500 LYS A 266 116.12 -160.71 REMARK 500 LYS A 273 -169.87 -109.15 REMARK 500 PRO B 90 -74.15 -40.13 REMARK 500 LEU B 104 -72.74 -58.35 REMARK 500 PRO B 109 86.05 -63.69 REMARK 500 ASP B 167 3.13 -59.83 REMARK 500 GLU B 170 -72.74 -65.81 REMARK 500 HIS B 185 17.93 -141.47 REMARK 500 SER B 195 151.25 85.11 REMARK 500 PHE B 223 147.40 -38.66 REMARK 500 ASP B 229 -165.18 62.75 REMARK 500 TRP B 235 172.47 -59.66 REMARK 500 PRO B 238 -174.53 -63.29 REMARK 500 ASN B 254 -79.32 -108.94 REMARK 500 ALA B 265 109.43 -166.27 REMARK 500 GLN B 274 -131.94 61.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2SQ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2SQ B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HRN RELATED DB: PDB REMARK 900 RELATED ID: 5HRP RELATED DB: PDB REMARK 900 RELATED ID: 5HRR RELATED DB: PDB REMARK 900 RELATED ID: 5HRS RELATED DB: PDB DBREF 5HOT A 2 288 UNP Q72498 Q72498_9HIV1 717 1003 DBREF 5HOT B 2 288 UNP Q72498 Q72498_9HIV1 717 1003 SEQADV 5HOT HIS A 1 UNP Q72498 EXPRESSION TAG SEQADV 5HOT ALA A 15 UNP Q72498 TYR 730 ENGINEERED MUTATION SEQADV 5HOT HIS A 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 5HOT LEU A 289 UNP Q72498 EXPRESSION TAG SEQADV 5HOT GLU A 290 UNP Q72498 EXPRESSION TAG SEQADV 5HOT TYR A 291 UNP Q72498 EXPRESSION TAG SEQADV 5HOT HIS B 1 UNP Q72498 EXPRESSION TAG SEQADV 5HOT ALA B 15 UNP Q72498 TYR 730 ENGINEERED MUTATION SEQADV 5HOT HIS B 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 5HOT LEU B 289 UNP Q72498 EXPRESSION TAG SEQADV 5HOT GLU B 290 UNP Q72498 EXPRESSION TAG SEQADV 5HOT TYR B 291 UNP Q72498 EXPRESSION TAG SEQRES 1 A 291 HIS LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 A 291 LYS ALA HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 A 291 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 A 291 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 A 291 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 A 291 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 A 291 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 A 291 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 A 291 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 A 291 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 A 291 TRP TRP ALA GLY ILE LYS GLN GLU PHE GLY ILE PRO TYR SEQRES 12 A 291 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 A 291 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 A 291 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 A 291 HIS ASN HIS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 A 291 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 A 291 GLN THR LYS GLU LEU GLN LYS GLN ILE THR LYS ILE GLN SEQRES 18 A 291 ASN PHE ARG VAL TYR TYR ARG ASP SER ARG ASP PRO VAL SEQRES 19 A 291 TRP LYS GLY PRO ALA LYS LEU LEU TRP LYS GLY GLU GLY SEQRES 20 A 291 ALA VAL VAL ILE GLN ASP ASN SER ASP ILE LYS VAL VAL SEQRES 21 A 291 PRO ARG ARG LYS ALA LYS ILE ILE ARG ASP TYR GLY LYS SEQRES 22 A 291 GLN MET ALA GLY ASP ASP CYS VAL ALA SER ARG GLN ASP SEQRES 23 A 291 GLU ASP LEU GLU TYR SEQRES 1 B 291 HIS LEU ASP GLY ILE ASP LYS ALA GLN GLU GLU HIS GLU SEQRES 2 B 291 LYS ALA HIS SER ASN TRP ARG ALA MET ALA SER ASP PHE SEQRES 3 B 291 ASN LEU PRO PRO VAL VAL ALA LYS GLU ILE VAL ALA SER SEQRES 4 B 291 CYS ASP LYS CYS GLN LEU LYS GLY GLU ALA MET HIS GLY SEQRES 5 B 291 GLN VAL ASP CYS SER PRO GLY ILE TRP GLN LEU ASP CYS SEQRES 6 B 291 THR HIS LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS SEQRES 7 B 291 VAL ALA SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA SEQRES 8 B 291 GLU THR GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU SEQRES 9 B 291 ALA GLY ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN SEQRES 10 B 291 GLY SER ASN PHE THR SER THR THR VAL LYS ALA ALA CYS SEQRES 11 B 291 TRP TRP ALA GLY ILE LYS GLN GLU PHE GLY ILE PRO TYR SEQRES 12 B 291 ASN PRO GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS SEQRES 13 B 291 GLU LEU LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA SEQRES 14 B 291 GLU HIS LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE SEQRES 15 B 291 HIS ASN HIS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER SEQRES 16 B 291 ALA GLY GLU ARG ILE VAL ASP ILE ILE ALA THR ASP ILE SEQRES 17 B 291 GLN THR LYS GLU LEU GLN LYS GLN ILE THR LYS ILE GLN SEQRES 18 B 291 ASN PHE ARG VAL TYR TYR ARG ASP SER ARG ASP PRO VAL SEQRES 19 B 291 TRP LYS GLY PRO ALA LYS LEU LEU TRP LYS GLY GLU GLY SEQRES 20 B 291 ALA VAL VAL ILE GLN ASP ASN SER ASP ILE LYS VAL VAL SEQRES 21 B 291 PRO ARG ARG LYS ALA LYS ILE ILE ARG ASP TYR GLY LYS SEQRES 22 B 291 GLN MET ALA GLY ASP ASP CYS VAL ALA SER ARG GLN ASP SEQRES 23 B 291 GLU ASP LEU GLU TYR HET 2SQ A 301 33 HET 2SQ B 301 33 HETNAM 2SQ (2S)-TERT-BUTOXY[4-(8-FLUORO-5-METHYL-3,4-DIHYDRO-2H- HETNAM 2 2SQ CHROMEN-6-YL)-2-METHYL-1-OXO-1,2-DIHYDROISOQUINOLIN-3- HETNAM 3 2SQ YL]ETHANOIC ACID FORMUL 3 2SQ 2(C26 H28 F N O5) HELIX 1 AA1 THR A 93 TRP A 108 1 16 HELIX 2 AA2 THR A 125 ALA A 133 1 9 HELIX 3 AA3 GLN A 148 GLN A 164 1 17 HELIX 4 AA4 VAL A 165 ALA A 169 5 5 HELIX 5 AA5 HIS A 171 ASN A 184 1 14 HELIX 6 AA6 ILE A 200 PHE A 223 1 24 HELIX 7 AA7 THR B 93 TRP B 108 1 16 HELIX 8 AA8 SER B 123 GLY B 134 1 12 HELIX 9 AA9 GLN B 146 VAL B 165 1 20 HELIX 10 AB1 ARG B 166 ALA B 169 5 4 HELIX 11 AB2 LEU B 172 ASN B 184 1 13 HELIX 12 AB3 SER B 195 PHE B 223 1 29 SHEET 1 AA1 3 ILE A 60 GLN A 62 0 SHEET 2 AA1 3 THR A 112 HIS A 114 1 O HIS A 114 N TRP A 61 SHEET 3 AA1 3 LYS A 136 GLU A 138 1 O GLU A 138 N VAL A 113 SHEET 1 AA2 3 ASP A 64 HIS A 67 0 SHEET 2 AA2 3 VAL A 72 VAL A 75 -1 O ILE A 73 N THR A 66 SHEET 3 AA2 3 GLU A 87 ILE A 89 -1 O GLU A 87 N LEU A 74 SHEET 1 AA3 5 ILE A 257 PRO A 261 0 SHEET 2 AA3 5 ALA A 248 GLN A 252 -1 N ILE A 251 O LYS A 258 SHEET 3 AA3 5 LYS A 236 LYS A 244 -1 N TRP A 243 O VAL A 250 SHEET 4 AA3 5 ARG A 224 TYR A 227 -1 N VAL A 225 O ALA A 239 SHEET 5 AA3 5 ALA A 265 LYS A 266 -1 O LYS A 266 N TYR A 226 SHEET 1 AA4 5 GLU B 87 ILE B 89 0 SHEET 2 AA4 5 VAL B 72 HIS B 78 -1 N LEU B 74 O GLU B 87 SHEET 3 AA4 5 ILE B 60 HIS B 67 -1 N GLN B 62 O VAL B 77 SHEET 4 AA4 5 THR B 112 HIS B 114 1 O HIS B 114 N TRP B 61 SHEET 5 AA4 5 LYS B 136 GLN B 137 1 O LYS B 136 N VAL B 113 SHEET 1 AA5 2 ARG B 224 TYR B 227 0 SHEET 2 AA5 2 ALA B 265 ILE B 268 -1 O ILE B 268 N ARG B 224 SHEET 1 AA6 3 LYS B 240 TRP B 243 0 SHEET 2 AA6 3 VAL B 249 GLN B 252 -1 O GLN B 252 N LYS B 240 SHEET 3 AA6 3 LYS B 258 VAL B 260 -1 O VAL B 260 N VAL B 249 CISPEP 1 GLY A 237 PRO A 238 0 0.08 CISPEP 2 GLY B 237 PRO B 238 0 0.10 SITE 1 AC1 15 GLN A 168 ALA A 169 GLU A 170 HIS A 171 SITE 2 AC1 15 THR A 174 MET A 178 ALA B 98 LEU B 102 SITE 3 AC1 15 THR B 124 THR B 125 ALA B 129 TRP B 132 SITE 4 AC1 15 TYR B 226 TRP B 235 LYS B 266 SITE 1 AC2 15 GLN A 95 ALA A 98 THR A 124 THR A 125 SITE 2 AC2 15 ALA A 128 ALA A 129 TRP A 132 TYR A 226 SITE 3 AC2 15 TRP A 235 ARG A 269 ALA B 169 GLU B 170 SITE 4 AC2 15 HIS B 171 THR B 174 MET B 178 CRYST1 107.060 107.060 243.490 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009341 0.005393 0.000000 0.00000 SCALE2 0.000000 0.010786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004107 0.00000