HEADER HYDROLASE/RNA 20-JAN-16 5HP2 TITLE HUMAN ADENOSINE DEAMINASE ACTING ON DSRNA (ADAR2) BOUND TO DSRNA TITLE 2 SEQUENCE DERIVED FROM S. CEREVISIAE BDF2 GENE WITH AU BASEPAIR AT TITLE 3 REACTION SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 299-701; COMPND 5 SYNONYM: RNA-EDITING DEAMINASE 1, RNA-EDITING ENZYME 1, DSRNA COMPND 6 ADENOSINE DEAMINASE; COMPND 7 EC: 3.5.4.37; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'-R(*UP*UP*CP*CP*CP*CP*AP*CP*AP*UP*UP*(8AZ) COMPND 11 P*GP*AP*CP*GP*UP*UP*CP*AP*GP*UP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RNA (5'- COMPND 16 R(*GP*AP*CP*UP*GP*AP*AP*CP*GP*AP*CP*UP*AP*AP*UP*GP*UP*GP*GP*GP*GP*AP* COMPND 17 A)-3'); COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADARB1, ADAR2, DRADA2, RED1; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BCY123; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSC; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: YEAST; SOURCE 16 ORGANISM_TAXID: 4932; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 20 ORGANISM_COMMON: YEAST; SOURCE 21 ORGANISM_TAXID: 4932 KEYWDS DEAMINASE, HUMAN, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.M.MATTHEWS,A.J.FISHER,P.A.BEAL REVDAT 8 27-SEP-23 5HP2 1 REMARK REVDAT 7 10-FEB-21 5HP2 1 REMARK REVDAT 6 14-OCT-20 5HP2 1 HETSYN LINK REVDAT 5 25-DEC-19 5HP2 1 REMARK REVDAT 4 13-SEP-17 5HP2 1 REMARK REVDAT 3 18-MAY-16 5HP2 1 JRNL REVDAT 2 27-APR-16 5HP2 1 JRNL REVDAT 1 13-APR-16 5HP2 0 JRNL AUTH M.M.MATTHEWS,J.M.THOMAS,Y.ZHENG,K.TRAN,K.J.PHELPS,A.I.SCOTT, JRNL AUTH 2 J.HAVEL,A.J.FISHER,P.A.BEAL JRNL TITL STRUCTURES OF HUMAN ADAR2 BOUND TO DSRNA REVEAL JRNL TITL 2 BASE-FLIPPING MECHANISM AND BASIS FOR SITE SELECTIVITY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 426 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27065196 JRNL DOI 10.1038/NSMB.3203 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5288 - 5.9603 0.96 2653 153 0.1496 0.1945 REMARK 3 2 5.9603 - 4.7336 0.99 2618 135 0.1391 0.2158 REMARK 3 3 4.7336 - 4.1360 0.97 2524 136 0.1351 0.2210 REMARK 3 4 4.1360 - 3.7582 0.99 2539 155 0.1471 0.2565 REMARK 3 5 3.7582 - 3.4890 0.99 2558 125 0.1830 0.2590 REMARK 3 6 3.4890 - 3.2834 0.96 2467 127 0.2040 0.3168 REMARK 3 7 3.2834 - 3.1191 0.99 2533 134 0.2285 0.3232 REMARK 3 8 3.1191 - 2.9834 0.93 2400 119 0.3079 0.4165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7462 REMARK 3 ANGLE : 1.359 10329 REMARK 3 CHIRALITY : 0.054 1195 REMARK 3 PLANARITY : 0.007 1146 REMARK 3 DIHEDRAL : 15.466 2928 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 305:349) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6742 -21.9316 32.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.4480 T22: 0.6689 REMARK 3 T33: 0.6163 T12: -0.0380 REMARK 3 T13: 0.0214 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.2851 L22: 0.2688 REMARK 3 L33: 0.1538 L12: 0.0443 REMARK 3 L13: 0.2266 L23: 0.0254 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.1063 S13: 0.1697 REMARK 3 S21: -0.2726 S22: -0.2829 S23: 0.6336 REMARK 3 S31: -0.0658 S32: -0.1325 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 350:422) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9179 -27.1517 41.0945 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.3577 REMARK 3 T33: 0.3351 T12: -0.1348 REMARK 3 T13: -0.0203 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 0.3405 L22: 0.4640 REMARK 3 L33: 0.2156 L12: -0.0479 REMARK 3 L13: -0.4194 L23: -0.0689 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: -0.2190 S13: -0.0243 REMARK 3 S21: -0.0855 S22: 0.0287 S23: -0.0327 REMARK 3 S31: 0.0465 S32: -0.4047 S33: -0.0059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 423:464) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8675 -24.3243 29.4659 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.3609 REMARK 3 T33: 0.3933 T12: -0.1110 REMARK 3 T13: 0.0373 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.3268 L22: 0.5302 REMARK 3 L33: 0.7714 L12: -0.0742 REMARK 3 L13: 0.5166 L23: 0.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.0586 S13: -0.1230 REMARK 3 S21: -0.0550 S22: 0.0627 S23: 0.2907 REMARK 3 S31: 0.1582 S32: -0.2565 S33: 0.0390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 465:470) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8113 -1.1402 16.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.6764 T22: 1.0598 REMARK 3 T33: 0.9699 T12: 0.1447 REMARK 3 T13: -0.1575 T23: 0.3419 REMARK 3 L TENSOR REMARK 3 L11: 0.0359 L22: 0.1709 REMARK 3 L33: 0.1229 L12: -0.0009 REMARK 3 L13: 0.0169 L23: 0.0747 REMARK 3 S TENSOR REMARK 3 S11: 0.1899 S12: -0.1618 S13: -0.1964 REMARK 3 S21: -0.2717 S22: -0.0270 S23: 0.2285 REMARK 3 S31: -0.2307 S32: 0.0167 S33: -0.0752 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 471:498) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0388 -1.8940 31.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.3231 REMARK 3 T33: 0.3006 T12: 0.0351 REMARK 3 T13: 0.0278 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.0981 L22: 0.1062 REMARK 3 L33: 0.1365 L12: 0.0393 REMARK 3 L13: -0.0215 L23: 0.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.0893 S12: -0.1375 S13: 0.2783 REMARK 3 S21: 0.1763 S22: 0.1428 S23: -0.0321 REMARK 3 S31: 0.5272 S32: 0.3320 S33: 0.0123 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 499:637) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5010 -18.6874 37.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.2736 T22: 0.3398 REMARK 3 T33: 0.3484 T12: -0.0295 REMARK 3 T13: 0.0078 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: -0.0187 L22: 0.1136 REMARK 3 L33: 0.9139 L12: 0.1561 REMARK 3 L13: -0.0987 L23: 0.1495 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.0690 S13: 0.0110 REMARK 3 S21: 0.0625 S22: 0.0584 S23: 0.0358 REMARK 3 S31: 0.0834 S32: -0.1779 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 638:700) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9718 -25.1374 37.9916 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.2505 REMARK 3 T33: 0.3357 T12: -0.0317 REMARK 3 T13: 0.0383 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.0371 L22: 0.1779 REMARK 3 L33: 0.8497 L12: 0.1515 REMARK 3 L13: 0.4025 L23: 0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.2096 S13: 0.0350 REMARK 3 S21: 0.1466 S22: 0.0493 S23: -0.0819 REMARK 3 S31: 0.1751 S32: -0.0784 S33: 0.0055 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1260 8.8435 17.6914 REMARK 3 T TENSOR REMARK 3 T11: 0.8365 T22: 0.5609 REMARK 3 T33: 0.6412 T12: -0.1489 REMARK 3 T13: -0.0778 T23: -0.1579 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: -0.0019 REMARK 3 L33: 0.0147 L12: 0.0047 REMARK 3 L13: 0.0145 L23: 0.0174 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: -0.3318 S13: 0.0320 REMARK 3 S21: -0.3465 S22: 0.2740 S23: 0.3262 REMARK 3 S31: -0.0254 S32: 0.0333 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7096 15.9706 29.7148 REMARK 3 T TENSOR REMARK 3 T11: 1.1973 T22: 0.5334 REMARK 3 T33: 0.7968 T12: -0.1313 REMARK 3 T13: 0.2317 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.1067 L22: 0.0069 REMARK 3 L33: 0.2152 L12: 0.0422 REMARK 3 L13: 0.0573 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.6581 S12: 0.0371 S13: -0.0087 REMARK 3 S21: 0.2085 S22: 0.7225 S23: 0.1825 REMARK 3 S31: -0.4201 S32: 0.7914 S33: 0.0105 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 10:14) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1740 -0.3757 40.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.3177 REMARK 3 T33: 0.3675 T12: 0.0331 REMARK 3 T13: 0.0449 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 0.6518 L22: 1.0342 REMARK 3 L33: 1.5486 L12: -0.4244 REMARK 3 L13: 0.8830 L23: -1.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.4205 S12: -0.2895 S13: 0.1767 REMARK 3 S21: -0.0618 S22: 0.1464 S23: 0.5661 REMARK 3 S31: -0.0181 S32: -1.0297 S33: 0.3463 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 15:18) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9758 5.5384 57.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.6269 T22: 0.7653 REMARK 3 T33: 0.5084 T12: 0.0764 REMARK 3 T13: 0.1011 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.0418 L22: 0.0260 REMARK 3 L33: -0.0013 L12: 0.0306 REMARK 3 L13: 0.0040 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.3610 S13: 0.0037 REMARK 3 S21: 0.4677 S22: -0.0053 S23: -0.0613 REMARK 3 S31: -0.0189 S32: 0.0178 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 19:23) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6131 -5.5906 63.7131 REMARK 3 T TENSOR REMARK 3 T11: 0.7194 T22: 0.6376 REMARK 3 T33: 0.7998 T12: 0.0211 REMARK 3 T13: 0.1685 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: -0.0054 L22: 0.0019 REMARK 3 L33: 0.0470 L12: -0.0143 REMARK 3 L13: 0.0003 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.4571 S12: -0.3780 S13: 0.4796 REMARK 3 S21: -0.0526 S22: -0.1230 S23: 0.3901 REMARK 3 S31: -0.2081 S32: 0.0598 S33: -0.0010 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0266 -7.8783 60.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.7874 T22: 0.5904 REMARK 3 T33: 0.6107 T12: 0.0885 REMARK 3 T13: 0.0806 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0027 REMARK 3 L33: 0.0023 L12: 0.0101 REMARK 3 L13: 0.0063 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.5181 S12: -0.0270 S13: -0.0840 REMARK 3 S21: 0.0914 S22: -0.3043 S23: -0.0948 REMARK 3 S31: -0.5621 S32: 0.0391 S33: 0.0007 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 6:9) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3920 5.4687 51.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.6283 T22: 1.0385 REMARK 3 T33: 0.7561 T12: 0.2986 REMARK 3 T13: 0.1529 T23: 0.3646 REMARK 3 L TENSOR REMARK 3 L11: 0.0090 L22: 0.0090 REMARK 3 L33: 0.0102 L12: 0.0108 REMARK 3 L13: 0.0149 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.2390 S12: 0.1890 S13: 0.3824 REMARK 3 S21: 0.0844 S22: -0.0431 S23: -0.1788 REMARK 3 S31: 0.5165 S32: 0.0373 S33: 0.0004 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 10:13) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3014 8.2899 43.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.8705 T22: -0.4981 REMARK 3 T33: 0.5871 T12: -0.0322 REMARK 3 T13: 0.1643 T23: 0.0893 REMARK 3 L TENSOR REMARK 3 L11: 0.1496 L22: 0.0120 REMARK 3 L33: 0.2188 L12: 0.0462 REMARK 3 L13: 0.1730 L23: 0.0577 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: -0.1462 S13: 0.2113 REMARK 3 S21: -0.1665 S22: 0.1046 S23: 0.6803 REMARK 3 S31: 0.1625 S32: -0.3083 S33: -0.0020 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 14:18) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7112 7.2882 27.1764 REMARK 3 T TENSOR REMARK 3 T11: 0.5840 T22: 0.4086 REMARK 3 T33: 0.5506 T12: 0.0142 REMARK 3 T13: -0.0500 T23: 0.1801 REMARK 3 L TENSOR REMARK 3 L11: 0.0652 L22: 0.0136 REMARK 3 L33: 0.0440 L12: 0.0463 REMARK 3 L13: -0.0652 L23: -0.0448 REMARK 3 S TENSOR REMARK 3 S11: -0.1676 S12: -0.2248 S13: 0.0572 REMARK 3 S21: -0.2560 S22: -0.0180 S23: 0.1992 REMARK 3 S31: 0.2920 S32: -0.1306 S33: -0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN C AND RESID 19:23) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9152 17.5965 15.9223 REMARK 3 T TENSOR REMARK 3 T11: 1.2657 T22: 0.5294 REMARK 3 T33: 0.6842 T12: 0.0141 REMARK 3 T13: 0.1775 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.0139 L22: -0.0105 REMARK 3 L33: 0.0487 L12: -0.0058 REMARK 3 L13: 0.0043 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.1914 S13: 0.0218 REMARK 3 S21: 0.4033 S22: 0.5463 S23: 0.4938 REMARK 3 S31: -0.2540 S32: 0.1753 S33: -0.0008 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 304:406) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4814 -44.6132 -1.8197 REMARK 3 T TENSOR REMARK 3 T11: 0.5279 T22: 0.5301 REMARK 3 T33: 0.4388 T12: -0.0191 REMARK 3 T13: -0.0341 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.7032 L22: 0.0221 REMARK 3 L33: 0.2815 L12: -0.4515 REMARK 3 L13: 0.0295 L23: -0.1410 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: 0.0865 S13: 0.0996 REMARK 3 S21: -0.1309 S22: 0.0403 S23: 0.0610 REMARK 3 S31: 0.0293 S32: 0.0498 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 407:464) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0255 -45.7259 -8.3821 REMARK 3 T TENSOR REMARK 3 T11: 0.5029 T22: 0.5042 REMARK 3 T33: 0.4015 T12: 0.0929 REMARK 3 T13: -0.0688 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.4392 L22: 1.6345 REMARK 3 L33: 0.1546 L12: -0.5336 REMARK 3 L13: 0.0681 L23: 0.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.2304 S12: 0.5861 S13: -0.1115 REMARK 3 S21: -0.5182 S22: -0.3954 S23: 0.2792 REMARK 3 S31: -0.0539 S32: 0.0559 S33: -1.2928 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN D AND RESID 465:471) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1954 -80.4255 -5.0655 REMARK 3 T TENSOR REMARK 3 T11: 1.0019 T22: 0.6801 REMARK 3 T33: 1.3305 T12: 0.2139 REMARK 3 T13: -0.5826 T23: 0.3295 REMARK 3 L TENSOR REMARK 3 L11: 2.0023 L22: 8.5153 REMARK 3 L33: 1.9981 L12: -4.9894 REMARK 3 L13: 6.1003 L23: 5.7313 REMARK 3 S TENSOR REMARK 3 S11: 2.0628 S12: 0.0620 S13: -3.1660 REMARK 3 S21: 1.5525 S22: 0.1029 S23: 0.7886 REMARK 3 S31: 3.5031 S32: -0.7732 S33: -2.2239 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN D AND RESID 472:494) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4724 -64.6213 10.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.5979 T22: 0.2405 REMARK 3 T33: 0.4245 T12: 0.1095 REMARK 3 T13: -0.0411 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 5.6265 L22: 2.1854 REMARK 3 L33: 5.7252 L12: 0.8052 REMARK 3 L13: 1.5202 L23: -1.8843 REMARK 3 S TENSOR REMARK 3 S11: 0.3676 S12: -0.1123 S13: -0.7665 REMARK 3 S21: -0.2243 S22: -0.4067 S23: -0.0234 REMARK 3 S31: 1.2466 S32: 0.6875 S33: -0.3750 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN D AND RESID 495:652) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4947 -49.4786 2.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.3008 REMARK 3 T33: 0.3660 T12: 0.0224 REMARK 3 T13: -0.1077 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.6704 L22: 1.0273 REMARK 3 L33: 1.2118 L12: -0.3616 REMARK 3 L13: -0.1247 L23: 0.4286 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: 0.0110 S13: -0.1085 REMARK 3 S21: -0.1234 S22: -0.0350 S23: 0.0778 REMARK 3 S31: -0.0206 S32: -0.1066 S33: -0.0000 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN D AND RESID 653:659) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2015 -44.9874 8.8834 REMARK 3 T TENSOR REMARK 3 T11: 0.6638 T22: 1.2182 REMARK 3 T33: 0.9025 T12: 0.0479 REMARK 3 T13: -0.0815 T23: -0.1830 REMARK 3 L TENSOR REMARK 3 L11: 0.0401 L22: 0.0176 REMARK 3 L33: -0.0047 L12: 0.0184 REMARK 3 L13: 0.0104 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: 0.2168 S13: 0.0424 REMARK 3 S21: 0.1202 S22: -0.1356 S23: 0.6959 REMARK 3 S31: 0.1354 S32: -0.2822 S33: -0.0009 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN D AND RESID 660:700) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9712 -55.5777 7.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.5680 REMARK 3 T33: 0.6221 T12: 0.0701 REMARK 3 T13: -0.0848 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 0.1268 L22: 0.1316 REMARK 3 L33: 0.1034 L12: 0.0346 REMARK 3 L13: 0.0798 L23: -0.1632 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: -0.3501 S13: -0.4592 REMARK 3 S21: -0.3553 S22: 0.0470 S23: 0.5442 REMARK 3 S31: -0.0151 S32: -0.5392 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 80.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.787 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.56 REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5, 17% PEG10000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 53.34000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.24500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 299 REMARK 465 HIS A 300 REMARK 465 LEU A 301 REMARK 465 ASP A 302 REMARK 465 GLN A 303 REMARK 465 THR A 304 REMARK 465 PRO A 701 REMARK 465 LEU D 299 REMARK 465 HIS D 300 REMARK 465 LEU D 301 REMARK 465 ASP D 302 REMARK 465 GLN D 303 REMARK 465 PRO D 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 305 CG CD REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 THR D 304 OG1 CG2 REMARK 470 PRO D 305 CG CD REMARK 470 SER D 306 OG REMARK 470 ARG D 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 465 CG CD OE1 OE2 REMARK 470 GLU D 466 CG CD OE1 OE2 REMARK 470 ARG D 470 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 471 CG ND1 CD2 CE1 NE2 REMARK 470 ASN D 473 CG OD1 ND2 REMARK 470 ARG D 474 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 475 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 392 NZ LYS D 483 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 344 OD2 ASP D 469 2445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 14 N1 - C6 - N6 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 307 56.23 -100.12 REMARK 500 SER A 312 -67.67 -94.18 REMARK 500 GLU A 313 -144.94 -115.51 REMARK 500 SER A 458 88.47 51.96 REMARK 500 LEU A 464 -144.27 46.46 REMARK 500 ALA A 497 165.39 -47.52 REMARK 500 SER A 498 -162.69 -102.58 REMARK 500 ILE A 499 95.63 54.59 REMARK 500 TYR A 561 -41.90 -159.97 REMARK 500 LEU A 573 -17.07 83.32 REMARK 500 PRO A 655 171.51 -59.90 REMARK 500 ASN A 656 60.46 -102.06 REMARK 500 ARG D 307 53.47 -97.63 REMARK 500 ILE D 456 95.29 -69.37 REMARK 500 PHE D 457 157.06 174.38 REMARK 500 GLU D 465 18.12 -38.51 REMARK 500 GLU D 466 109.76 48.12 REMARK 500 PRO D 467 12.99 -64.94 REMARK 500 ALA D 468 -5.91 54.43 REMARK 500 ARG D 470 95.23 19.36 REMARK 500 HIS D 471 118.28 -26.38 REMARK 500 ASN D 473 -85.10 -110.87 REMARK 500 LYS D 475 -121.47 -147.14 REMARK 500 ALA D 476 75.76 68.03 REMARK 500 ARG D 477 -161.83 -79.21 REMARK 500 SER D 498 -169.84 -113.82 REMARK 500 TYR D 561 -41.56 -158.12 REMARK 500 LEU D 573 -19.04 83.49 REMARK 500 THR D 653 -60.16 -106.17 REMARK 500 ASN D 656 57.95 -102.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 394 ND1 REMARK 620 2 CYS A 451 SG 110.4 REMARK 620 3 CYS A 516 SG 103.2 113.4 REMARK 620 4 8AZ B 12 O6 114.4 110.8 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 394 ND1 REMARK 620 2 CYS D 451 SG 101.4 REMARK 620 3 CYS D 516 SG 98.2 108.1 REMARK 620 4 HOH D 901 O 92.6 122.0 125.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ED1 RELATED DB: PDB REMARK 900 RELATED ID: 5ED2 RELATED DB: PDB REMARK 900 RELATED ID: 5HP3 RELATED DB: PDB DBREF 5HP2 A 299 701 UNP P78563 RED1_HUMAN 299 701 DBREF 5HP2 B 1 23 PDB 5HP2 5HP2 1 23 DBREF 5HP2 C 1 23 PDB 5HP2 5HP2 1 23 DBREF 5HP2 D 299 701 UNP P78563 RED1_HUMAN 299 701 SEQRES 1 A 403 LEU HIS LEU ASP GLN THR PRO SER ARG GLN PRO ILE PRO SEQRES 2 A 403 SER GLU GLY LEU GLN LEU HIS LEU PRO GLN VAL LEU ALA SEQRES 3 A 403 ASP ALA VAL SER ARG LEU VAL LEU GLY LYS PHE GLY ASP SEQRES 4 A 403 LEU THR ASP ASN PHE SER SER PRO HIS ALA ARG ARG LYS SEQRES 5 A 403 VAL LEU ALA GLY VAL VAL MET THR THR GLY THR ASP VAL SEQRES 6 A 403 LYS ASP ALA LYS VAL ILE SER VAL SER THR GLY THR LYS SEQRES 7 A 403 CYS ILE ASN GLY GLU TYR MET SER ASP ARG GLY LEU ALA SEQRES 8 A 403 LEU ASN ASP CYS HIS ALA GLU ILE ILE SER ARG ARG SER SEQRES 9 A 403 LEU LEU ARG PHE LEU TYR THR GLN LEU GLU LEU TYR LEU SEQRES 10 A 403 ASN ASN LYS ASP ASP GLN LYS ARG SER ILE PHE GLN LYS SEQRES 11 A 403 SER GLU ARG GLY GLY PHE ARG LEU LYS GLU ASN VAL GLN SEQRES 12 A 403 PHE HIS LEU TYR ILE SER THR SER PRO CYS GLY ASP ALA SEQRES 13 A 403 ARG ILE PHE SER PRO HIS GLU PRO ILE LEU GLU GLU PRO SEQRES 14 A 403 ALA ASP ARG HIS PRO ASN ARG LYS ALA ARG GLY GLN LEU SEQRES 15 A 403 ARG THR LYS ILE GLU SER GLY GLU GLY THR ILE PRO VAL SEQRES 16 A 403 ARG SER ASN ALA SER ILE GLN THR TRP ASP GLY VAL LEU SEQRES 17 A 403 GLN GLY GLU ARG LEU LEU THR MET SER CYS SER ASP LYS SEQRES 18 A 403 ILE ALA ARG TRP ASN VAL VAL GLY ILE GLN GLY SER LEU SEQRES 19 A 403 LEU SER ILE PHE VAL GLU PRO ILE TYR PHE SER SER ILE SEQRES 20 A 403 ILE LEU GLY SER LEU TYR HIS GLY ASP HIS LEU SER ARG SEQRES 21 A 403 ALA MET TYR GLN ARG ILE SER ASN ILE GLU ASP LEU PRO SEQRES 22 A 403 PRO LEU TYR THR LEU ASN LYS PRO LEU LEU SER GLY ILE SEQRES 23 A 403 SER ASN ALA GLU ALA ARG GLN PRO GLY LYS ALA PRO ASN SEQRES 24 A 403 PHE SER VAL ASN TRP THR VAL GLY ASP SER ALA ILE GLU SEQRES 25 A 403 VAL ILE ASN ALA THR THR GLY LYS ASP GLU LEU GLY ARG SEQRES 26 A 403 ALA SER ARG LEU CYS LYS HIS ALA LEU TYR CYS ARG TRP SEQRES 27 A 403 MET ARG VAL HIS GLY LYS VAL PRO SER HIS LEU LEU ARG SEQRES 28 A 403 SER LYS ILE THR LYS PRO ASN VAL TYR HIS GLU SER LYS SEQRES 29 A 403 LEU ALA ALA LYS GLU TYR GLN ALA ALA LYS ALA ARG LEU SEQRES 30 A 403 PHE THR ALA PHE ILE LYS ALA GLY LEU GLY ALA TRP VAL SEQRES 31 A 403 GLU LYS PRO THR GLU GLN ASP GLN PHE SER LEU THR PRO SEQRES 1 B 23 U U C C C C A C A U U 8AZ G SEQRES 2 B 23 A C G U U C A G U C SEQRES 1 C 23 G A C U G A A C G A C U A SEQRES 2 C 23 A U G U G G G G A A SEQRES 1 D 403 LEU HIS LEU ASP GLN THR PRO SER ARG GLN PRO ILE PRO SEQRES 2 D 403 SER GLU GLY LEU GLN LEU HIS LEU PRO GLN VAL LEU ALA SEQRES 3 D 403 ASP ALA VAL SER ARG LEU VAL LEU GLY LYS PHE GLY ASP SEQRES 4 D 403 LEU THR ASP ASN PHE SER SER PRO HIS ALA ARG ARG LYS SEQRES 5 D 403 VAL LEU ALA GLY VAL VAL MET THR THR GLY THR ASP VAL SEQRES 6 D 403 LYS ASP ALA LYS VAL ILE SER VAL SER THR GLY THR LYS SEQRES 7 D 403 CYS ILE ASN GLY GLU TYR MET SER ASP ARG GLY LEU ALA SEQRES 8 D 403 LEU ASN ASP CYS HIS ALA GLU ILE ILE SER ARG ARG SER SEQRES 9 D 403 LEU LEU ARG PHE LEU TYR THR GLN LEU GLU LEU TYR LEU SEQRES 10 D 403 ASN ASN LYS ASP ASP GLN LYS ARG SER ILE PHE GLN LYS SEQRES 11 D 403 SER GLU ARG GLY GLY PHE ARG LEU LYS GLU ASN VAL GLN SEQRES 12 D 403 PHE HIS LEU TYR ILE SER THR SER PRO CYS GLY ASP ALA SEQRES 13 D 403 ARG ILE PHE SER PRO HIS GLU PRO ILE LEU GLU GLU PRO SEQRES 14 D 403 ALA ASP ARG HIS PRO ASN ARG LYS ALA ARG GLY GLN LEU SEQRES 15 D 403 ARG THR LYS ILE GLU SER GLY GLU GLY THR ILE PRO VAL SEQRES 16 D 403 ARG SER ASN ALA SER ILE GLN THR TRP ASP GLY VAL LEU SEQRES 17 D 403 GLN GLY GLU ARG LEU LEU THR MET SER CYS SER ASP LYS SEQRES 18 D 403 ILE ALA ARG TRP ASN VAL VAL GLY ILE GLN GLY SER LEU SEQRES 19 D 403 LEU SER ILE PHE VAL GLU PRO ILE TYR PHE SER SER ILE SEQRES 20 D 403 ILE LEU GLY SER LEU TYR HIS GLY ASP HIS LEU SER ARG SEQRES 21 D 403 ALA MET TYR GLN ARG ILE SER ASN ILE GLU ASP LEU PRO SEQRES 22 D 403 PRO LEU TYR THR LEU ASN LYS PRO LEU LEU SER GLY ILE SEQRES 23 D 403 SER ASN ALA GLU ALA ARG GLN PRO GLY LYS ALA PRO ASN SEQRES 24 D 403 PHE SER VAL ASN TRP THR VAL GLY ASP SER ALA ILE GLU SEQRES 25 D 403 VAL ILE ASN ALA THR THR GLY LYS ASP GLU LEU GLY ARG SEQRES 26 D 403 ALA SER ARG LEU CYS LYS HIS ALA LEU TYR CYS ARG TRP SEQRES 27 D 403 MET ARG VAL HIS GLY LYS VAL PRO SER HIS LEU LEU ARG SEQRES 28 D 403 SER LYS ILE THR LYS PRO ASN VAL TYR HIS GLU SER LYS SEQRES 29 D 403 LEU ALA ALA LYS GLU TYR GLN ALA ALA LYS ALA ARG LEU SEQRES 30 D 403 PHE THR ALA PHE ILE LYS ALA GLY LEU GLY ALA TRP VAL SEQRES 31 D 403 GLU LYS PRO THR GLU GLN ASP GLN PHE SER LEU THR PRO HET 8AZ B 12 22 HET IHP A 801 36 HET ZN A 802 1 HET IHP D 801 36 HET ZN D 802 1 HETNAM 8AZ 8-AZA-NEBULARINE-5'-MONOPHOSPHATE HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM ZN ZINC ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 8AZ C9 H14 N5 O8 P FORMUL 5 IHP 2(C6 H18 O24 P6) FORMUL 6 ZN 2(ZN 2+) FORMUL 9 HOH *(H2 O) HELIX 1 AA1 LEU A 319 THR A 339 1 21 HELIX 2 AA2 SER A 344 ARG A 348 5 5 HELIX 3 AA3 ASN A 379 MET A 383 5 5 HELIX 4 AA4 HIS A 394 LEU A 415 1 22 HELIX 5 AA5 ASP A 420 SER A 424 5 5 HELIX 6 AA6 THR A 501 GLY A 508 1 8 HELIX 7 AA7 SER A 515 GLY A 527 1 13 HELIX 8 AA8 GLN A 529 SER A 534 1 6 HELIX 9 AA9 HIS A 552 TYR A 561 1 10 HELIX 10 AB1 GLN A 562 SER A 565 5 4 HELIX 11 AB2 CYS A 628 VAL A 643 1 16 HELIX 12 AB3 PRO A 644 LEU A 648 5 5 HELIX 13 AB4 VAL A 657 ALA A 664 1 8 HELIX 14 AB5 ALA A 665 ALA A 682 1 18 HELIX 15 AB6 PRO A 691 GLN A 696 5 6 HELIX 16 AB7 LEU D 319 LEU D 338 1 20 HELIX 17 AB8 SER D 344 ARG D 348 5 5 HELIX 18 AB9 ASN D 379 MET D 383 5 5 HELIX 19 AC1 HIS D 394 LEU D 415 1 22 HELIX 20 AC2 ASP D 419 ARG D 423 5 5 HELIX 21 AC3 GLY D 452 ILE D 456 5 5 HELIX 22 AC4 THR D 501 GLN D 507 1 7 HELIX 23 AC5 SER D 515 GLY D 527 1 13 HELIX 24 AC6 GLN D 529 SER D 534 1 6 HELIX 25 AC7 HIS D 552 TYR D 561 1 10 HELIX 26 AC8 GLN D 562 SER D 565 5 4 HELIX 27 AC9 CYS D 628 VAL D 643 1 16 HELIX 28 AD1 PRO D 644 LEU D 648 5 5 HELIX 29 AD2 VAL D 657 ALA D 664 1 8 HELIX 30 AD3 ALA D 665 ALA D 682 1 18 SHEET 1 AA1 7 LEU A 580 GLY A 583 0 SHEET 2 AA1 7 PHE A 542 LEU A 547 1 N ILE A 545 O LEU A 580 SHEET 3 AA1 7 GLN A 441 ILE A 446 1 N PHE A 442 O SER A 543 SHEET 4 AA1 7 LEU A 352 THR A 358 -1 N GLY A 354 O TYR A 445 SHEET 5 AA1 7 ALA A 366 THR A 373 -1 O SER A 372 N ALA A 353 SHEET 6 AA1 7 PHE A 598 THR A 603 -1 O VAL A 600 N THR A 373 SHEET 7 AA1 7 GLU A 610 ASN A 613 -1 O ILE A 612 N SER A 599 SHEET 1 AA2 2 PHE A 426 LYS A 428 0 SHEET 2 AA2 2 PHE A 434 LEU A 436 -1 O ARG A 435 N GLN A 427 SHEET 1 AA3 3 THR A 490 PRO A 492 0 SHEET 2 AA3 3 ARG A 481 ILE A 484 -1 N THR A 482 O ILE A 491 SHEET 3 AA3 3 LEU A 512 MET A 514 -1 O THR A 513 N LYS A 483 SHEET 1 AA4 7 LEU D 580 GLY D 583 0 SHEET 2 AA4 7 PHE D 542 LEU D 547 1 N SER D 543 O LEU D 580 SHEET 3 AA4 7 GLN D 441 ILE D 446 1 N LEU D 444 O ILE D 546 SHEET 4 AA4 7 LEU D 352 THR D 358 -1 N GLY D 354 O TYR D 445 SHEET 5 AA4 7 ALA D 366 THR D 373 -1 O SER D 372 N ALA D 353 SHEET 6 AA4 7 PHE D 598 THR D 603 -1 O VAL D 600 N THR D 373 SHEET 7 AA4 7 GLU D 610 ASN D 613 -1 O ILE D 612 N SER D 599 SHEET 1 AA5 2 PHE D 426 LYS D 428 0 SHEET 2 AA5 2 PHE D 434 LEU D 436 -1 O ARG D 435 N GLN D 427 SHEET 1 AA6 3 THR D 490 PRO D 492 0 SHEET 2 AA6 3 ARG D 481 LYS D 483 -1 N THR D 482 O ILE D 491 SHEET 3 AA6 3 THR D 513 MET D 514 -1 O THR D 513 N LYS D 483 LINK O3' U B 11 P 8AZ B 12 1555 1555 1.60 LINK O3' 8AZ B 12 P G B 13 1555 1555 1.61 LINK ND1 HIS A 394 ZN ZN A 802 1555 1555 2.10 LINK SG CYS A 451 ZN ZN A 802 1555 1555 2.30 LINK SG CYS A 516 ZN ZN A 802 1555 1555 2.24 LINK ZN ZN A 802 O6 8AZ B 12 1555 1555 2.35 LINK ND1 HIS D 394 ZN ZN D 802 1555 1555 2.06 LINK SG CYS D 451 ZN ZN D 802 1555 1555 2.25 LINK SG CYS D 516 ZN ZN D 802 1555 1555 2.35 LINK ZN ZN D 802 O HOH D 901 1555 1555 2.24 SITE 1 AC1 14 ILE A 397 ARG A 400 ARG A 401 LYS A 519 SITE 2 AC1 14 ARG A 522 GLY A 530 SER A 531 LYS A 629 SITE 3 AC1 14 TYR A 658 LYS A 662 TYR A 668 LYS A 672 SITE 4 AC1 14 GLU A 689 LYS A 690 SITE 1 AC2 6 HIS A 394 GLU A 396 CYS A 451 LYS A 483 SITE 2 AC2 6 CYS A 516 8AZ B 12 SITE 1 AC3 16 ASN D 391 ILE D 397 ARG D 400 ARG D 401 SITE 2 AC3 16 THR D 513 LYS D 519 ARG D 522 SER D 531 SITE 3 AC3 16 LYS D 629 TYR D 658 LYS D 662 TYR D 668 SITE 4 AC3 16 LYS D 672 TRP D 687 GLU D 689 LYS D 690 SITE 1 AC4 5 HIS D 394 GLU D 396 CYS D 451 CYS D 516 SITE 2 AC4 5 HOH D 901 CRYST1 81.320 106.680 120.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008299 0.00000