HEADER HYDROLASE 20-JAN-16 5HP6 TITLE STRUCTURE OF ABNA, A GH43 EXTRACELLULAR ARABINANASE FROM GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS (A NEW CONFORMATIONAL STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR ARABINANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: ABNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINANASE, GH43, EXTRACELLULAR, GEOBACILLUS STEAROTHERMOPHILUS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LANSKY,R.SALAMA,O.SHWARTSTIEN,Y.SHOHAM,G.SHOHAM REVDAT 2 10-JAN-24 5HP6 1 LINK REVDAT 1 01-FEB-17 5HP6 0 JRNL AUTH S.LANSKY,R.SALAMA,O.SHWARTSTIEN,Y.SHOHAM,G.SHOHAM JRNL TITL STRUCTURE OF ABNA, A GH43 EXTRACELLULAR ARABINANASE FROM JRNL TITL 2 GEOBACILLUS STEAROTHERMOPHILUS (A NEW CONFORMATIONAL STATE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 45306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 2093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9384 - 5.1597 1.00 3234 157 0.1504 0.1969 REMARK 3 2 5.1597 - 4.0960 1.00 3092 150 0.1369 0.1647 REMARK 3 3 4.0960 - 3.5785 0.99 3059 148 0.1674 0.2501 REMARK 3 4 3.5785 - 3.2514 1.00 3062 148 0.1901 0.2278 REMARK 3 5 3.2514 - 3.0183 1.00 3023 146 0.2133 0.2966 REMARK 3 6 3.0183 - 2.8404 1.00 3030 147 0.2180 0.2779 REMARK 3 7 2.8404 - 2.6982 1.00 3001 145 0.2210 0.3172 REMARK 3 8 2.6982 - 2.5807 1.00 3024 147 0.2274 0.2995 REMARK 3 9 2.5807 - 2.4814 1.00 3011 145 0.2246 0.2916 REMARK 3 10 2.4814 - 2.3958 1.00 2990 145 0.2221 0.2858 REMARK 3 11 2.3958 - 2.3208 0.99 2971 144 0.2395 0.3292 REMARK 3 12 2.3208 - 2.2545 0.87 2619 127 0.2817 0.3434 REMARK 3 13 2.2545 - 2.1952 0.82 2441 118 0.3925 0.5308 REMARK 3 14 2.1952 - 2.1416 0.84 2531 123 0.2934 0.3178 REMARK 3 15 2.1416 - 2.0929 0.71 2122 103 0.3203 0.4209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6478 REMARK 3 ANGLE : 1.136 8827 REMARK 3 CHIRALITY : 0.045 925 REMARK 3 PLANARITY : 0.006 1146 REMARK 3 DIHEDRAL : 13.409 2271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.093 REMARK 200 RESOLUTION RANGE LOW (A) : 48.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 11.34 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17%-19% PEG 6K, 0.2M NACL, 0.1M HEPES REMARK 280 BUFFER, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.42350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.03450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.32050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.03450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.42350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.32050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 CYS A 19 REMARK 465 LEU A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 LEU A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 HIS A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 ASN A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 ASN A 40 REMARK 465 GLN A 41 REMARK 465 LYS A 42 REMARK 465 VAL A 43 REMARK 465 LYS A 44 REMARK 465 SER A 847 REMARK 465 GLU A 848 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LYS A 448 CD CE NZ REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 GLU A 607 CG CD OE1 OE2 REMARK 470 LYS A 643 CD CE NZ REMARK 470 ASN A 653 CG OD1 ND2 REMARK 470 GLU A 675 CG CD OE1 OE2 REMARK 470 LYS A 732 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 792 OG SER A 795 2.04 REMARK 500 O PRO A 93 O HOH A 1001 2.13 REMARK 500 O HOH A 1273 O HOH A 1274 2.17 REMARK 500 NH2 ARG A 285 O THR A 343 2.18 REMARK 500 O HOH A 1266 O HOH A 1270 2.18 REMARK 500 OD1 ASP A 61 OH TYR A 146 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 117 -117.40 55.16 REMARK 500 TYR A 175 138.10 -37.52 REMARK 500 THR A 203 -169.50 -105.71 REMARK 500 SER A 255 107.05 -168.65 REMARK 500 TRP A 256 -147.92 58.44 REMARK 500 SER A 257 -133.30 48.78 REMARK 500 TYR A 300 -6.27 76.65 REMARK 500 HIS A 395 85.31 39.19 REMARK 500 LYS A 403 -77.49 -89.79 REMARK 500 SER A 471 -165.90 -171.91 REMARK 500 ASN A 502 4.25 -157.84 REMARK 500 ASP A 593 86.94 -169.37 REMARK 500 PHE A 650 14.50 59.40 REMARK 500 GLU A 675 -166.79 -129.47 REMARK 500 PRO A 701 151.26 -45.28 REMARK 500 THR A 727 -84.82 -105.86 REMARK 500 PRO A 734 22.47 -57.37 REMARK 500 PRO A 757 -150.20 -81.33 REMARK 500 ASP A 760 79.58 -104.34 REMARK 500 ASP A 780 49.06 -143.09 REMARK 500 ASP A 801 64.94 -112.35 REMARK 500 ASN A 807 88.93 -154.81 REMARK 500 ASN A 815 -127.17 -119.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 333 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1273 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1274 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1275 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 649 O REMARK 620 2 ASP A 651 OD1 83.4 REMARK 620 3 ILE A 686 O 160.9 78.9 REMARK 620 4 LYS A 688 O 83.3 93.4 104.7 REMARK 620 5 ASP A 826 OD1 83.3 164.1 115.3 76.5 REMARK 620 6 ASP A 826 OD2 124.3 151.1 72.5 97.9 44.3 REMARK 620 7 GLU A 827 OE2 89.2 97.7 86.2 165.8 90.7 76.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1032 O REMARK 620 2 HOH A1055 O 72.7 REMARK 620 3 HOH A1073 O 72.0 144.6 REMARK 620 4 HOH A1121 O 142.8 143.1 72.0 REMARK 620 5 HOH A1202 O 86.1 96.4 79.2 96.2 REMARK 620 6 HOH A1205 O 138.8 68.9 143.7 78.2 84.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HO0 RELATED DB: PDB REMARK 900 RELATED ID: 5HO2 RELATED DB: PDB REMARK 900 RELATED ID: 5HO9 RELATED DB: PDB REMARK 900 RELATED ID: 5HOF RELATED DB: PDB REMARK 900 RELATED ID: 5HON RELATED DB: PDB DBREF 5HP6 A 1 848 UNP B3EYN2 B3EYN2_GEOSE 1 848 SEQRES 1 A 848 MET LYS ARG ARG SER LEU LYS GLY ILE ALA LEU PHE LEU SEQRES 2 A 848 LEU ILE VAL ALA VAL CYS LEU SER SER ALA THR LEU GLY SEQRES 3 A 848 ARG GLY GLU GLU LYS HIS THR GLY GLU ASN VAL ARG GLN SEQRES 4 A 848 ASN GLN LYS VAL LYS ASP PRO GLN PHE THR ASN VAL SER SEQRES 5 A 848 VAL HIS ASP PRO SER ILE VAL LYS ASP GLY ASP THR TYR SEQRES 6 A 848 TYR ILE PHE GLY SER HIS ILE GLU ALA ALA LYS SER LYS SEQRES 7 A 848 ASP LEU MET ASN TRP GLU LYS PHE THR ASN GLY TYR THR SEQRES 8 A 848 THR PRO ASN ASN LYS LEU TYR GLY ASP LEU SER LYS ASN SEQRES 9 A 848 LEU ALA GLY SER PHE LYS TRP ALA GLY GLU ASN ASP ALA SEQRES 10 A 848 ASP SER LYS GLY GLY PHE ALA VAL TRP ALA PRO ASP VAL SEQRES 11 A 848 PHE TRP ASN LYS ASP TYR VAL ASN GLU ASP GLY THR LYS SEQRES 12 A 848 GLY ALA TYR MET ILE TYR TYR SER VAL SER SER THR TYR SEQRES 13 A 848 ILE ARG SER ALA ILE GLY TYR ALA VAL SER LYS HIS ILE SEQRES 14 A 848 GLU GLY PRO TYR LYS TYR VAL ASP THR ILE VAL TYR SER SEQRES 15 A 848 GLY PHE THR LYS GLU GLU ALA TYR ASP ALA ASN SER LYS SEQRES 16 A 848 ILE ASN LYS LYS TRP THR ASN THR ASN ILE PRO LYS LEU SEQRES 17 A 848 ILE GLU GLN GLY LYS LEU LYS GLY VAL ARG ALA ASP TRP SEQRES 18 A 848 PHE HIS ASN ASP GLY SER TYR ASN ASN ARG ASP PHE PRO SEQRES 19 A 848 ASN ALA ILE ASP PRO ASN LEU PHE TYR ASP GLU LYS GLY SEQRES 20 A 848 ASN LEU TRP MET ALA TYR GLY SER TRP SER GLY GLY ILE SEQRES 21 A 848 PHE VAL LEU PRO MET ASP LYS THR THR GLY LYS PRO ILE SEQRES 22 A 848 TYR PRO GLY LYS ASP GLY LYS THR PRO ASP GLY ARG LEU SEQRES 23 A 848 VAL ASP ARG TYR PHE GLY ILE LYS ILE ALA GLY GLY TYR SEQRES 24 A 848 TYR GLN SER GLY GLU GLY THR TYR ILE VAL TYR ASP LYS SEQRES 25 A 848 ASN THR ASP TYR TYR TYR LEU TYR VAL THR TYR GLY TRP SEQRES 26 A 848 LEU GLY ALA ASP GLY GLY TYR ASN MET ARG GLN PHE ARG SEQRES 27 A 848 SER THR SER PRO THR GLY PRO TYR VAL ASP ALA LYS GLY SEQRES 28 A 848 GLN SER ALA VAL LEU PRO GLY GLU VAL ASP ASN SER PRO SEQRES 29 A 848 TYR GLY ASN LYS ILE MET GLY ASN PHE LEU PHE GLU ARG SEQRES 30 A 848 LYS VAL GLY ASP PRO GLY THR GLY ILE GLY VAL GLY TYR SEQRES 31 A 848 VAL SER PRO GLY HIS ASN SER VAL TYR LEU ASP ARG LYS SEQRES 32 A 848 THR GLY GLN GLN PHE LEU VAL PHE HIS THR ARG PHE PRO SEQRES 33 A 848 GLN SER GLY GLU TYR HIS GLU VAL ARG VAL HIS GLN MET SEQRES 34 A 848 PHE MET ASN LYS ASN GLY TRP PRO VAL VAL ALA PRO TYR SEQRES 35 A 848 ARG TYR ALA GLY GLU LYS LEU GLU LYS VAL ASN LYS GLN SEQRES 36 A 848 ASP VAL VAL GLY GLU TYR GLN LEU ILE ASN HIS GLY LYS SEQRES 37 A 848 ASP TYR SER ALA ASP ILE LYS LYS GLN ILE PHE VAL ARG SEQRES 38 A 848 LEU ASN ARG ASN ASN THR ILE SER GLY ASP ALA THR GLY SEQRES 39 A 848 THR TRP ARG LYS ILE GLY HIS ASN GLN ALA GLU ILE THR SEQRES 40 A 848 ILE ASP GLY GLU THR TYR ASP GLY VAL PHE VAL ARG GLN SEQRES 41 A 848 TRP ASP PRO THR SER LYS ARG TYR VAL MET ALA PHE THR SEQRES 42 A 848 ALA LEU SER ASN GLU GLY VAL SER ILE TRP GLY SER LYS SEQRES 43 A 848 LEU ALA ASP LYS THR ASP GLU GLU ILE VAL GLU ASP VAL SEQRES 44 A 848 ALA SER ASP LEU ASP LEU GLY ASP THR ASP HIS VAL VAL SEQRES 45 A 848 SER ASN LEU HIS LEU PRO THR GLU GLY THR ARG HIS THR SEQRES 46 A 848 VAL ILE SER TRP THR THR SER ASP ALA LYS VAL VAL SER SEQRES 47 A 848 GLU THR GLY VAL VAL HIS ARG PRO GLU VAL GLY SER ALA SEQRES 48 A 848 PRO VAL THR ALA THR LEU THR ALA THR ILE THR LYS GLY SEQRES 49 A 848 ASP ALA THR ALA THR LYS VAL PHE HIS ILE THR VAL LEU SEQRES 50 A 848 PRO TYR GLU GLU ALA LYS LEU THR ALA HIS TYR SER PHE SEQRES 51 A 848 ASP ASN ASN ASP LEU SER ASP SER THR GLY ASN PHE GLY SEQRES 52 A 848 PRO GLY THR ILE THR GLY ASN ARG ILE ASP ASN GLU GLY SEQRES 53 A 848 GLY THR ILE ALA TYR ALA ASP GLY LYS ILE GLY LYS ALA SEQRES 54 A 848 ALA VAL LEU ASN GLY GLN SER GLY ILE ARG LEU PRO ASP SEQRES 55 A 848 GLY LEU VAL SER SER ASN GLN TYR SER VAL SER LEU TRP SEQRES 56 A 848 VAL LYS PRO GLU GLN LEU THR THR HIS THR THR THR PHE SEQRES 57 A 848 PHE GLY ALA LYS ASP PRO ASN HIS TRP ILE SER LEU VAL SEQRES 58 A 848 PRO GLN GLY TRP ASP GLY ASN THR MET LEU TRP SER GLY SEQRES 59 A 848 SER SER PRO TRP TYR ASP GLY ARG THR PHE TRP LYS ILE SEQRES 60 A 848 PRO THR GLY GLN TRP THR HIS LEU ALA PHE SER VAL ASP SEQRES 61 A 848 ASN GLY ALA VAL LYS VAL TYR ILE ASN GLY VAL GLU LYS SEQRES 62 A 848 PHE SER GLY THR ASN PHE PRO ASP VAL PHE THR GLY ALA SEQRES 63 A 848 ASN ALA SER PHE ALA LEU GLY VAL ASN TRP TRP ASP PRO SEQRES 64 A 848 PRO PHE LYS GLY LEU ILE ASP GLU LEU ARG ILE TYR GLU SEQRES 65 A 848 GLY ALA LEU THR PRO SER GLN VAL THR ASP LEU ALA GLN SEQRES 66 A 848 THR SER GLU HET CA A 901 1 HET CA A 902 1 HET TRS A 903 8 HET PEG A 904 7 HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN TRS TRIS BUFFER FORMUL 2 CA 2(CA 2+) FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *275(H2 O) HELIX 1 AA1 ASP A 100 LEU A 105 1 6 HELIX 2 AA2 LEU A 105 LYS A 110 1 6 HELIX 3 AA3 ASP A 116 LYS A 120 5 5 HELIX 4 AA4 LYS A 199 THR A 203 5 5 HELIX 5 AA5 ASN A 204 GLN A 211 1 8 HELIX 6 AA6 ARG A 218 PHE A 222 5 5 HELIX 7 AA7 ASN A 453 VAL A 458 1 6 HELIX 8 AA8 THR A 551 LEU A 563 1 13 HELIX 9 AA9 THR A 582 HIS A 584 5 3 HELIX 10 AB1 THR A 836 ALA A 844 1 9 SHEET 1 AA1 4 SER A 57 ASP A 61 0 SHEET 2 AA1 4 THR A 64 GLY A 69 -1 O TYR A 66 N VAL A 59 SHEET 3 AA1 4 GLU A 73 SER A 77 -1 O SER A 77 N TYR A 65 SHEET 4 AA1 4 GLU A 84 LYS A 85 -1 O GLU A 84 N LYS A 76 SHEET 1 AA2 4 VAL A 125 VAL A 137 0 SHEET 2 AA2 4 LYS A 143 SER A 153 -1 O ALA A 145 N ASN A 133 SHEET 3 AA2 4 SER A 159 SER A 166 -1 O SER A 166 N TYR A 146 SHEET 4 AA2 4 LYS A 174 SER A 182 -1 O LYS A 174 N VAL A 165 SHEET 1 AA3 6 ASN A 240 TYR A 243 0 SHEET 2 AA3 6 LEU A 249 TYR A 253 -1 O ALA A 252 N ASN A 240 SHEET 3 AA3 6 ILE A 260 MET A 265 -1 O MET A 265 N LEU A 249 SHEET 4 AA3 6 GLY A 292 ALA A 296 -1 O ILE A 295 N ILE A 260 SHEET 5 AA3 6 LEU A 286 ASP A 288 -1 N ASP A 288 O GLY A 292 SHEET 6 AA3 6 GLY A 279 LYS A 280 -1 N GLY A 279 O VAL A 287 SHEET 1 AA4 4 GLU A 304 TYR A 310 0 SHEET 2 AA4 4 TYR A 317 TYR A 323 -1 O TYR A 318 N VAL A 309 SHEET 3 AA4 4 ASN A 333 SER A 339 -1 O SER A 339 N TYR A 317 SHEET 4 AA4 4 ASN A 367 MET A 370 -1 O ASN A 367 N GLN A 336 SHEET 1 AA5 6 PRO A 437 VAL A 439 0 SHEET 2 AA5 6 GLU A 423 MET A 431 -1 N PHE A 430 O VAL A 438 SHEET 3 AA5 6 GLN A 407 ARG A 414 -1 N LEU A 409 O HIS A 427 SHEET 4 AA5 6 GLY A 387 LEU A 400 -1 N SER A 397 O VAL A 410 SHEET 5 AA5 6 PHE A 373 GLU A 376 -1 N PHE A 375 O VAL A 388 SHEET 6 AA5 6 LYS A 475 LYS A 476 1 O LYS A 475 N LEU A 374 SHEET 1 AA6 9 GLY A 459 ASN A 465 0 SHEET 2 AA6 9 ILE A 478 LEU A 482 -1 O ILE A 478 N LEU A 463 SHEET 3 AA6 9 THR A 487 GLY A 490 -1 O SER A 489 N ARG A 481 SHEET 4 AA6 9 GLY A 494 ILE A 499 -1 O GLY A 494 N ILE A 488 SHEET 5 AA6 9 GLN A 503 ILE A 508 -1 O THR A 507 N THR A 495 SHEET 6 AA6 9 GLU A 511 ASP A 522 -1 O TYR A 513 N ILE A 506 SHEET 7 AA6 9 ARG A 527 LEU A 535 -1 O VAL A 529 N GLN A 520 SHEET 8 AA6 9 SER A 541 LYS A 546 -1 O GLY A 544 N PHE A 532 SHEET 9 AA6 9 GLY A 459 ASN A 465 -1 N ILE A 464 O TRP A 543 SHEET 1 AA7 4 GLU A 580 GLY A 581 0 SHEET 2 AA7 4 THR A 585 THR A 591 -1 O THR A 585 N GLY A 581 SHEET 3 AA7 4 VAL A 613 LYS A 623 -1 O THR A 622 N VAL A 586 SHEET 4 AA7 4 ALA A 626 VAL A 636 -1 O VAL A 636 N VAL A 613 SHEET 1 AA8 4 LYS A 643 TYR A 648 0 SHEET 2 AA8 4 LYS A 822 GLU A 832 -1 O ILE A 830 N THR A 645 SHEET 3 AA8 4 LYS A 688 ASN A 693 -1 N LEU A 692 O GLY A 823 SHEET 4 AA8 4 ALA A 680 ASP A 683 -1 N ALA A 682 O ALA A 689 SHEET 1 AA9 6 LYS A 643 TYR A 648 0 SHEET 2 AA9 6 LYS A 822 GLU A 832 -1 O ILE A 830 N THR A 645 SHEET 3 AA9 6 GLN A 709 GLN A 720 -1 N GLU A 719 O LYS A 822 SHEET 4 AA9 6 THR A 773 ASP A 780 -1 O LEU A 775 N LEU A 714 SHEET 5 AA9 6 VAL A 784 ILE A 788 -1 O TYR A 787 N ALA A 776 SHEET 6 AA9 6 VAL A 791 GLY A 796 -1 O LYS A 793 N VAL A 786 SHEET 1 AB1 7 THR A 666 THR A 668 0 SHEET 2 AB1 7 GLY A 697 LEU A 700 -1 O ARG A 699 N THR A 666 SHEET 3 AB1 7 SER A 809 LEU A 812 -1 O PHE A 810 N LEU A 700 SHEET 4 AB1 7 PHE A 728 ASP A 733 -1 N ALA A 731 O SER A 809 SHEET 5 AB1 7 HIS A 736 VAL A 741 -1 O ILE A 738 N GLY A 730 SHEET 6 AB1 7 THR A 749 SER A 755 -1 O GLY A 754 N TRP A 737 SHEET 7 AB1 7 TYR A 759 TRP A 765 -1 O TRP A 765 N THR A 749 LINK O SER A 649 CA CA A 901 1555 1555 2.38 LINK OD1 ASP A 651 CA CA A 901 1555 1555 2.50 LINK O ILE A 686 CA CA A 901 1555 1555 2.36 LINK O LYS A 688 CA CA A 901 1555 1555 2.40 LINK OD1 ASP A 826 CA CA A 901 1555 1555 2.42 LINK OD2 ASP A 826 CA CA A 901 1555 1555 3.14 LINK OE2 GLU A 827 CA CA A 901 1555 1555 2.42 LINK CA CA A 902 O HOH A1032 1555 1555 2.69 LINK CA CA A 902 O HOH A1055 1555 1555 2.43 LINK CA CA A 902 O HOH A1073 1555 1555 2.51 LINK CA CA A 902 O HOH A1121 1555 1555 2.63 LINK CA CA A 902 O HOH A1202 1555 1555 2.39 LINK CA CA A 902 O HOH A1205 1555 1555 2.36 CISPEP 1 THR A 92 PRO A 93 0 -0.98 CISPEP 2 GLY A 171 PRO A 172 0 5.12 CISPEP 3 GLY A 344 PRO A 345 0 1.73 CISPEP 4 GLY A 754 SER A 755 0 7.58 CISPEP 5 SER A 756 PRO A 757 0 -0.61 SITE 1 AC1 6 SER A 649 ASP A 651 ILE A 686 LYS A 688 SITE 2 AC1 6 ASP A 826 GLU A 827 SITE 1 AC2 7 HIS A 395 HOH A1032 HOH A1055 HOH A1073 SITE 2 AC2 7 HOH A1121 HOH A1202 HOH A1205 SITE 1 AC3 9 HIS A 54 ASP A 55 TRP A 126 ILE A 237 SITE 2 AC3 9 ASP A 238 GLU A 304 LEU A 326 HIS A 395 SITE 3 AC3 9 HOH A1040 SITE 1 AC4 1 TYR A 146 CRYST1 72.847 82.641 132.069 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007572 0.00000