data_5HPG # _entry.id 5HPG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5HPG pdb_00005hpg 10.2210/pdb5hpg/pdb WWPDB D_1000179725 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5HPG _pdbx_database_status.recvd_initial_deposition_date 1997-09-19 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tulinsky, A.' 1 'Mochalkin, I.' 2 'Castellino, F.J.' 3 # _citation.id primary _citation.title 'Structure and ligand binding determinants of the recombinant kringle 5 domain of human plasminogen.' _citation.journal_abbrev Biochemistry _citation.journal_volume 37 _citation.page_first 3258 _citation.page_last 3271 _citation.year 1998 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9521645 _citation.pdbx_database_id_DOI 10.1021/bi972284e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chang, Y.' 1 ? primary 'Mochalkin, I.' 2 ? primary 'McCance, S.G.' 3 ? primary 'Cheng, B.' 4 ? primary 'Tulinsky, A.' 5 ? primary 'Castellino, F.J.' 6 ? # _cell.entry_id 5HPG _cell.length_a 77.430 _cell.length_b 79.200 _cell.length_c 30.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HPG _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PLASMINOGEN 9394.440 2 3.4.21.7 ? 'KRINGLE 5' ? 2 water nat water 18.015 193 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DCMFGNGKGYRGKRVTTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQ CAAP ; _entity_poly.pdbx_seq_one_letter_code_can ;DCMFGNGKGYRGKRVTTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQ CAAP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 CYS n 1 3 MET n 1 4 PHE n 1 5 GLY n 1 6 ASN n 1 7 GLY n 1 8 LYS n 1 9 GLY n 1 10 TYR n 1 11 ARG n 1 12 GLY n 1 13 LYS n 1 14 ARG n 1 15 VAL n 1 16 THR n 1 17 THR n 1 18 VAL n 1 19 THR n 1 20 GLY n 1 21 THR n 1 22 PRO n 1 23 CYS n 1 24 GLN n 1 25 ASP n 1 26 TRP n 1 27 ALA n 1 28 ALA n 1 29 GLN n 1 30 GLU n 1 31 PRO n 1 32 HIS n 1 33 ARG n 1 34 HIS n 1 35 SER n 1 36 ILE n 1 37 PHE n 1 38 THR n 1 39 PRO n 1 40 GLU n 1 41 THR n 1 42 ASN n 1 43 PRO n 1 44 ARG n 1 45 ALA n 1 46 GLY n 1 47 LEU n 1 48 GLU n 1 49 LYS n 1 50 ASN n 1 51 TYR n 1 52 CYS n 1 53 ARG n 1 54 ASN n 1 55 PRO n 1 56 ASP n 1 57 GLY n 1 58 ASP n 1 59 VAL n 1 60 GLY n 1 61 GLY n 1 62 PRO n 1 63 TRP n 1 64 CYS n 1 65 TYR n 1 66 THR n 1 67 THR n 1 68 ASN n 1 69 PRO n 1 70 ARG n 1 71 LYS n 1 72 LEU n 1 73 TYR n 1 74 ASP n 1 75 TYR n 1 76 CYS n 1 77 ASP n 1 78 VAL n 1 79 PRO n 1 80 GLN n 1 81 CYS n 1 82 ALA n 1 83 ALA n 1 84 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLMN_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00747 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENR KSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQ GPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRE LRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLD ENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQS WSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEED CMFGNGKGYRGKRATTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQC AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQ LPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFV TWIEGVMRNN ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HPG A 1 ? 84 ? P00747 480 ? 563 ? 0 83 2 1 5HPG B 1 ? 84 ? P00747 480 ? 563 ? 0 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5HPG VAL A 15 ? UNP P00747 ALA 494 conflict 14 1 2 5HPG VAL B 15 ? UNP P00747 ALA 494 conflict 14 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5HPG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 42. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '24% (W/V) PEG 8000, 0.1 M NA-HEPES, PH 7.0, 0.15 M LI2(SO4)' # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1997-04 _diffrn_detector.details 'MSC-YALE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 5HPG _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.26 _reflns.d_resolution_high 1.66 _reflns.number_obs 16720 _reflns.number_all ? _reflns.percent_possible_obs 72. _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 14. _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.5 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 37. _reflns_shell.Rmerge_I_obs 0.087 _reflns_shell.pdbx_Rsym_value 0.13 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 5HPG _refine.ls_number_reflns_obs 15014 _refine.ls_number_reflns_all 16720 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 84. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 15.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PKR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 193 _refine_hist.number_atoms_total 1489 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.016 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.034 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.050 0.040 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.160 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.18 0.80 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.24 0.80 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.23 0.80 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 5.2 3.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 17.8 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 22.4 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.847210 _struct_ncs_oper.matrix[1][2] -0.074010 _struct_ncs_oper.matrix[1][3] -0.526070 _struct_ncs_oper.matrix[2][1] -0.030510 _struct_ncs_oper.matrix[2][2] -0.981840 _struct_ncs_oper.matrix[2][3] 0.187260 _struct_ncs_oper.matrix[3][1] -0.530370 _struct_ncs_oper.matrix[3][2] 0.174700 _struct_ncs_oper.matrix[3][3] 0.829570 _struct_ncs_oper.vector[1] 31.74900 _struct_ncs_oper.vector[2] 53.68800 _struct_ncs_oper.vector[3] 3.80200 # _struct.entry_id 5HPG _struct.title 'STRUCTURE AND LIGAND DETERMINANTS OF THE RECOMBINANT KRINGLE 5 DOMAIN OF HUMAN PLASMINOGEN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5HPG _struct_keywords.pdbx_keywords 'SERINE PROTEASE' _struct_keywords.text 'SERINE PROTEASE, KRINGLE 5, HUMAN PLASMINOGEN, FIBRINOLYSIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 1 A CYS 80 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.084 ? ? disulf3 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 76 SG ? ? A CYS 51 A CYS 75 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 81 SG ? ? B CYS 1 B CYS 80 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf5 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 64 SG ? ? B CYS 22 B CYS 63 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf6 disulf ? ? B CYS 52 SG ? ? ? 1_555 B CYS 76 SG ? ? B CYS 51 B CYS 75 1_555 ? ? ? ? ? ? ? 2.071 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 30 A . ? GLU 29 A PRO 31 A ? PRO 30 A 1 2.58 2 GLU 30 B . ? GLU 29 B PRO 31 B ? PRO 30 B 1 -2.20 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 63 ? TYR A 65 ? TRP A 62 TYR A 64 A 2 TYR A 73 ? TYR A 75 ? TYR A 72 TYR A 74 B 1 TRP B 63 ? TYR B 65 ? TRP B 62 TYR B 64 B 2 TYR B 73 ? TYR B 75 ? TYR B 72 TYR B 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 64 ? O CYS A 63 N ASP A 74 ? N ASP A 73 B 1 2 O CYS B 64 ? O CYS B 63 N ASP B 74 ? N ASP B 73 # _struct_site.id LBS _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'LYSINE BINDING SITE.' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 LBS 4 ASP A 56 ? ASP A 55 . ? 1_555 ? 2 LBS 4 ASP A 58 ? ASP A 57 . ? 1_555 ? 3 LBS 4 ASP B 56 ? ASP B 55 . ? 1_555 ? 4 LBS 4 ASP B 58 ? ASP B 57 . ? 1_555 ? # _database_PDB_matrix.entry_id 5HPG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5HPG _atom_sites.fract_transf_matrix[1][1] 0.012915 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012626 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032489 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 0 0 ASP ASP A . n A 1 2 CYS 2 1 1 CYS CYS A . n A 1 3 MET 3 2 2 MET MET A . n A 1 4 PHE 4 3 3 PHE PHE A . n A 1 5 GLY 5 4 4 GLY GLY A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLY 9 8 8 GLY GLY A . n A 1 10 TYR 10 9 9 TYR TYR A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 PRO 22 21 21 PRO PRO A . n A 1 23 CYS 23 22 22 CYS CYS A . n A 1 24 GLN 24 23 23 GLN GLN A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 TRP 26 25 25 TRP TRP A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 PRO 31 30 30 PRO PRO A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 HIS 34 33 33 HIS HIS A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 PRO 43 42 42 PRO PRO A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 CYS 52 51 51 CYS CYS A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 TRP 63 62 62 TRP TRP A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 THR 66 65 65 THR THR A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 PRO 69 68 68 PRO PRO A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 CYS 76 75 75 CYS CYS A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 GLN 80 79 79 GLN GLN A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 PRO 84 83 83 PRO PRO A . n B 1 1 ASP 1 0 0 ASP ASP B . n B 1 2 CYS 2 1 1 CYS CYS B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 PHE 4 3 3 PHE PHE B . n B 1 5 GLY 5 4 4 GLY GLY B . n B 1 6 ASN 6 5 5 ASN ASN B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 LYS 8 7 7 LYS LYS B . n B 1 9 GLY 9 8 8 GLY GLY B . n B 1 10 TYR 10 9 9 TYR TYR B . n B 1 11 ARG 11 10 10 ARG ARG B . n B 1 12 GLY 12 11 11 GLY GLY B . n B 1 13 LYS 13 12 12 LYS LYS B . n B 1 14 ARG 14 13 13 ARG ARG B . n B 1 15 VAL 15 14 14 VAL VAL B . n B 1 16 THR 16 15 15 THR THR B . n B 1 17 THR 17 16 16 THR THR B . n B 1 18 VAL 18 17 17 VAL VAL B . n B 1 19 THR 19 18 18 THR THR B . n B 1 20 GLY 20 19 19 GLY GLY B . n B 1 21 THR 21 20 20 THR THR B . n B 1 22 PRO 22 21 21 PRO PRO B . n B 1 23 CYS 23 22 22 CYS CYS B . n B 1 24 GLN 24 23 23 GLN GLN B . n B 1 25 ASP 25 24 24 ASP ASP B . n B 1 26 TRP 26 25 25 TRP TRP B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 ALA 28 27 27 ALA ALA B . n B 1 29 GLN 29 28 28 GLN GLN B . n B 1 30 GLU 30 29 29 GLU GLU B . n B 1 31 PRO 31 30 30 PRO PRO B . n B 1 32 HIS 32 31 31 HIS HIS B . n B 1 33 ARG 33 32 32 ARG ARG B . n B 1 34 HIS 34 33 33 HIS HIS B . n B 1 35 SER 35 34 34 SER SER B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 PHE 37 36 36 PHE PHE B . n B 1 38 THR 38 37 37 THR THR B . n B 1 39 PRO 39 38 38 PRO PRO B . n B 1 40 GLU 40 39 39 GLU GLU B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 ASN 42 41 41 ASN ASN B . n B 1 43 PRO 43 42 42 PRO PRO B . n B 1 44 ARG 44 43 43 ARG ARG B . n B 1 45 ALA 45 44 44 ALA ALA B . n B 1 46 GLY 46 45 45 GLY GLY B . n B 1 47 LEU 47 46 46 LEU LEU B . n B 1 48 GLU 48 47 47 GLU GLU B . n B 1 49 LYS 49 48 48 LYS LYS B . n B 1 50 ASN 50 49 49 ASN ASN B . n B 1 51 TYR 51 50 50 TYR TYR B . n B 1 52 CYS 52 51 51 CYS CYS B . n B 1 53 ARG 53 52 52 ARG ARG B . n B 1 54 ASN 54 53 53 ASN ASN B . n B 1 55 PRO 55 54 54 PRO PRO B . n B 1 56 ASP 56 55 55 ASP ASP B . n B 1 57 GLY 57 56 56 GLY GLY B . n B 1 58 ASP 58 57 57 ASP ASP B . n B 1 59 VAL 59 58 58 VAL VAL B . n B 1 60 GLY 60 59 59 GLY GLY B . n B 1 61 GLY 61 60 60 GLY GLY B . n B 1 62 PRO 62 61 61 PRO PRO B . n B 1 63 TRP 63 62 62 TRP TRP B . n B 1 64 CYS 64 63 63 CYS CYS B . n B 1 65 TYR 65 64 64 TYR TYR B . n B 1 66 THR 66 65 65 THR THR B . n B 1 67 THR 67 66 66 THR THR B . n B 1 68 ASN 68 67 67 ASN ASN B . n B 1 69 PRO 69 68 68 PRO PRO B . n B 1 70 ARG 70 69 69 ARG ARG B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 LEU 72 71 71 LEU LEU B . n B 1 73 TYR 73 72 72 TYR TYR B . n B 1 74 ASP 74 73 73 ASP ASP B . n B 1 75 TYR 75 74 74 TYR TYR B . n B 1 76 CYS 76 75 75 CYS CYS B . n B 1 77 ASP 77 76 76 ASP ASP B . n B 1 78 VAL 78 77 77 VAL VAL B . n B 1 79 PRO 79 78 78 PRO PRO B . n B 1 80 GLN 80 79 79 GLN GLN B . n B 1 81 CYS 81 80 80 CYS CYS B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 PRO 84 83 83 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 401 401 HOH HOH A . C 2 HOH 2 402 402 HOH HOH A . C 2 HOH 3 403 403 HOH HOH A . C 2 HOH 4 404 404 HOH HOH A . C 2 HOH 5 405 405 HOH HOH A . C 2 HOH 6 406 406 HOH HOH A . C 2 HOH 7 407 407 HOH HOH A . C 2 HOH 8 409 409 HOH HOH A . C 2 HOH 9 410 410 HOH HOH A . C 2 HOH 10 411 411 HOH HOH A . C 2 HOH 11 417 417 HOH HOH A . C 2 HOH 12 419 419 HOH HOH A . C 2 HOH 13 420 420 HOH HOH A . C 2 HOH 14 422 422 HOH HOH A . C 2 HOH 15 427 427 HOH HOH A . C 2 HOH 16 428 428 HOH HOH A . C 2 HOH 17 430 430 HOH HOH A . C 2 HOH 18 432 432 HOH HOH A . C 2 HOH 19 434 434 HOH HOH A . C 2 HOH 20 435 435 HOH HOH A . C 2 HOH 21 436 436 HOH HOH A . C 2 HOH 22 439 439 HOH HOH A . C 2 HOH 23 440 440 HOH HOH A . C 2 HOH 24 441 441 HOH HOH A . C 2 HOH 25 444 444 HOH HOH A . C 2 HOH 26 446 446 HOH HOH A . C 2 HOH 27 447 447 HOH HOH A . C 2 HOH 28 448 448 HOH HOH A . C 2 HOH 29 449 449 HOH HOH A . C 2 HOH 30 453 453 HOH HOH A . C 2 HOH 31 458 458 HOH HOH A . C 2 HOH 32 459 459 HOH HOH A . C 2 HOH 33 461 461 HOH HOH A . C 2 HOH 34 467 467 HOH HOH A . C 2 HOH 35 471 471 HOH HOH A . C 2 HOH 36 474 474 HOH HOH A . C 2 HOH 37 475 475 HOH HOH A . C 2 HOH 38 478 478 HOH HOH A . C 2 HOH 39 481 481 HOH HOH A . C 2 HOH 40 482 482 HOH HOH A . C 2 HOH 41 484 484 HOH HOH A . C 2 HOH 42 486 486 HOH HOH A . C 2 HOH 43 489 489 HOH HOH A . C 2 HOH 44 491 491 HOH HOH A . C 2 HOH 45 498 498 HOH HOH A . C 2 HOH 46 500 500 HOH HOH A . C 2 HOH 47 502 502 HOH HOH A . C 2 HOH 48 504 504 HOH HOH A . C 2 HOH 49 506 506 HOH HOH A . C 2 HOH 50 507 507 HOH HOH A . C 2 HOH 51 508 508 HOH HOH A . C 2 HOH 52 510 510 HOH HOH A . C 2 HOH 53 511 511 HOH HOH A . C 2 HOH 54 512 512 HOH HOH A . C 2 HOH 55 513 513 HOH HOH A . C 2 HOH 56 514 514 HOH HOH A . C 2 HOH 57 515 515 HOH HOH A . C 2 HOH 58 516 516 HOH HOH A . C 2 HOH 59 517 517 HOH HOH A . C 2 HOH 60 519 519 HOH HOH A . C 2 HOH 61 522 522 HOH HOH A . C 2 HOH 62 523 523 HOH HOH A . C 2 HOH 63 524 524 HOH HOH A . C 2 HOH 64 525 525 HOH HOH A . C 2 HOH 65 526 526 HOH HOH A . C 2 HOH 66 527 527 HOH HOH A . C 2 HOH 67 528 528 HOH HOH A . C 2 HOH 68 529 529 HOH HOH A . C 2 HOH 69 530 530 HOH HOH A . C 2 HOH 70 531 531 HOH HOH A . C 2 HOH 71 532 532 HOH HOH A . C 2 HOH 72 533 533 HOH HOH A . C 2 HOH 73 534 534 HOH HOH A . C 2 HOH 74 535 535 HOH HOH A . C 2 HOH 75 536 536 HOH HOH A . C 2 HOH 76 537 537 HOH HOH A . C 2 HOH 77 538 538 HOH HOH A . C 2 HOH 78 539 539 HOH HOH A . C 2 HOH 79 540 540 HOH HOH A . C 2 HOH 80 541 541 HOH HOH A . C 2 HOH 81 542 542 HOH HOH A . C 2 HOH 82 545 545 HOH HOH A . C 2 HOH 83 546 546 HOH HOH A . C 2 HOH 84 548 548 HOH HOH A . C 2 HOH 85 549 549 HOH HOH A . C 2 HOH 86 550 550 HOH HOH A . C 2 HOH 87 555 555 HOH HOH A . C 2 HOH 88 561 561 HOH HOH A . C 2 HOH 89 562 562 HOH HOH A . C 2 HOH 90 563 563 HOH HOH A . C 2 HOH 91 564 564 HOH HOH A . C 2 HOH 92 565 565 HOH HOH A . C 2 HOH 93 566 566 HOH HOH A . C 2 HOH 94 567 567 HOH HOH A . C 2 HOH 95 574 574 HOH HOH A . C 2 HOH 96 588 588 HOH HOH A . C 2 HOH 97 589 589 HOH HOH A . D 2 HOH 1 400 400 HOH HOH B . D 2 HOH 2 408 408 HOH HOH B . D 2 HOH 3 412 412 HOH HOH B . D 2 HOH 4 413 413 HOH HOH B . D 2 HOH 5 414 414 HOH HOH B . D 2 HOH 6 415 415 HOH HOH B . D 2 HOH 7 416 416 HOH HOH B . D 2 HOH 8 418 418 HOH HOH B . D 2 HOH 9 421 421 HOH HOH B . D 2 HOH 10 423 423 HOH HOH B . D 2 HOH 11 424 424 HOH HOH B . D 2 HOH 12 425 425 HOH HOH B . D 2 HOH 13 426 426 HOH HOH B . D 2 HOH 14 429 429 HOH HOH B . D 2 HOH 15 431 431 HOH HOH B . D 2 HOH 16 433 433 HOH HOH B . D 2 HOH 17 437 437 HOH HOH B . D 2 HOH 18 438 438 HOH HOH B . D 2 HOH 19 442 442 HOH HOH B . D 2 HOH 20 443 443 HOH HOH B . D 2 HOH 21 445 445 HOH HOH B . D 2 HOH 22 450 450 HOH HOH B . D 2 HOH 23 451 451 HOH HOH B . D 2 HOH 24 452 452 HOH HOH B . D 2 HOH 25 454 454 HOH HOH B . D 2 HOH 26 455 455 HOH HOH B . D 2 HOH 27 456 456 HOH HOH B . D 2 HOH 28 457 457 HOH HOH B . D 2 HOH 29 460 460 HOH HOH B . D 2 HOH 30 462 462 HOH HOH B . D 2 HOH 31 463 463 HOH HOH B . D 2 HOH 32 464 464 HOH HOH B . D 2 HOH 33 465 465 HOH HOH B . D 2 HOH 34 466 466 HOH HOH B . D 2 HOH 35 468 468 HOH HOH B . D 2 HOH 36 469 469 HOH HOH B . D 2 HOH 37 470 470 HOH HOH B . D 2 HOH 38 472 472 HOH HOH B . D 2 HOH 39 473 473 HOH HOH B . D 2 HOH 40 476 476 HOH HOH B . D 2 HOH 41 477 477 HOH HOH B . D 2 HOH 42 479 479 HOH HOH B . D 2 HOH 43 480 480 HOH HOH B . D 2 HOH 44 483 483 HOH HOH B . D 2 HOH 45 485 485 HOH HOH B . D 2 HOH 46 487 487 HOH HOH B . D 2 HOH 47 488 488 HOH HOH B . D 2 HOH 48 490 490 HOH HOH B . D 2 HOH 49 492 492 HOH HOH B . D 2 HOH 50 493 493 HOH HOH B . D 2 HOH 51 494 494 HOH HOH B . D 2 HOH 52 495 495 HOH HOH B . D 2 HOH 53 496 496 HOH HOH B . D 2 HOH 54 497 497 HOH HOH B . D 2 HOH 55 499 499 HOH HOH B . D 2 HOH 56 501 501 HOH HOH B . D 2 HOH 57 503 503 HOH HOH B . D 2 HOH 58 505 505 HOH HOH B . D 2 HOH 59 509 509 HOH HOH B . D 2 HOH 60 518 518 HOH HOH B . D 2 HOH 61 520 520 HOH HOH B . D 2 HOH 62 521 521 HOH HOH B . D 2 HOH 63 543 543 HOH HOH B . D 2 HOH 64 544 544 HOH HOH B . D 2 HOH 65 547 547 HOH HOH B . D 2 HOH 66 551 551 HOH HOH B . D 2 HOH 67 552 552 HOH HOH B . D 2 HOH 68 553 553 HOH HOH B . D 2 HOH 69 554 554 HOH HOH B . D 2 HOH 70 556 556 HOH HOH B . D 2 HOH 71 557 557 HOH HOH B . D 2 HOH 72 558 558 HOH HOH B . D 2 HOH 73 559 559 HOH HOH B . D 2 HOH 74 560 560 HOH HOH B . D 2 HOH 75 568 568 HOH HOH B . D 2 HOH 76 569 569 HOH HOH B . D 2 HOH 77 570 570 HOH HOH B . D 2 HOH 78 571 571 HOH HOH B . D 2 HOH 79 572 572 HOH HOH B . D 2 HOH 80 573 573 HOH HOH B . D 2 HOH 81 575 575 HOH HOH B . D 2 HOH 82 576 576 HOH HOH B . D 2 HOH 83 577 577 HOH HOH B . D 2 HOH 84 578 578 HOH HOH B . D 2 HOH 85 579 579 HOH HOH B . D 2 HOH 86 580 580 HOH HOH B . D 2 HOH 87 581 581 HOH HOH B . D 2 HOH 88 582 582 HOH HOH B . D 2 HOH 89 583 583 HOH HOH B . D 2 HOH 90 584 584 HOH HOH B . D 2 HOH 91 585 585 HOH HOH B . D 2 HOH 92 586 586 HOH HOH B . D 2 HOH 93 587 587 HOH HOH B . D 2 HOH 94 590 590 HOH HOH B . D 2 HOH 95 591 591 HOH HOH B . D 2 HOH 96 592 592 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-25 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal RIGAKU 'data collection' R-AXIS ? 1 RIGAKU 'data reduction' R-AXIS ? 2 AMoRE phasing . ? 3 PROFFT refinement . ? 4 R-AXIS 'data reduction' '(RIGAKU)' ? 5 R-AXIS 'data scaling' '(RIGAKU)' ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH1 A ARG 10 ? ? 124.06 120.30 3.76 0.50 N 2 1 CG A GLU 29 ? ? CD A GLU 29 ? ? OE2 A GLU 29 ? ? 131.09 118.30 12.79 2.00 N 3 1 NE A ARG 32 ? ? CZ A ARG 32 ? ? NH1 A ARG 32 ? ? 123.35 120.30 3.05 0.50 N 4 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH1 A ARG 52 ? ? 123.68 120.30 3.38 0.50 N 5 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH2 A ARG 52 ? ? 116.98 120.30 -3.32 0.50 N 6 1 CB A ASP 57 ? ? CG A ASP 57 ? ? OD1 A ASP 57 ? ? 126.43 118.30 8.13 0.90 N 7 1 NE A ARG 69 ? ? CZ A ARG 69 ? ? NH1 A ARG 69 ? ? 123.97 120.30 3.67 0.50 N 8 1 CB A TYR 74 ? ? CG A TYR 74 ? ? CD2 A TYR 74 ? ? 117.24 121.00 -3.76 0.60 N 9 1 NE B ARG 10 ? ? CZ B ARG 10 ? ? NH2 B ARG 10 ? ? 116.91 120.30 -3.39 0.50 N 10 1 CD B ARG 32 ? ? NE B ARG 32 ? ? CZ B ARG 32 ? ? 132.19 123.60 8.59 1.40 N 11 1 NE B ARG 32 ? ? CZ B ARG 32 ? ? NH1 B ARG 32 ? ? 124.16 120.30 3.86 0.50 N 12 1 NE B ARG 69 ? ? CZ B ARG 69 ? ? NH2 B ARG 69 ? ? 124.02 120.30 3.72 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 48 ? ? 59.19 -124.75 2 1 VAL B 14 ? ? -142.78 21.52 3 1 LYS B 48 ? ? 43.67 -131.04 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ARG A 43 ? ? -14.36 2 1 CYS A 75 ? ? -13.22 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 69 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.203 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 43 ? NE ? A ARG 44 NE 2 1 Y 1 A ARG 43 ? CZ ? A ARG 44 CZ 3 1 Y 1 A ARG 43 ? NH1 ? A ARG 44 NH1 4 1 Y 1 A ARG 43 ? NH2 ? A ARG 44 NH2 5 1 Y 1 A GLU 47 ? CG ? A GLU 48 CG 6 1 Y 1 A GLU 47 ? CD ? A GLU 48 CD 7 1 Y 1 A GLU 47 ? OE1 ? A GLU 48 OE1 8 1 Y 1 A GLU 47 ? OE2 ? A GLU 48 OE2 9 1 Y 1 A LYS 48 ? CE ? A LYS 49 CE 10 1 Y 1 A LYS 48 ? NZ ? A LYS 49 NZ 11 1 Y 1 B ARG 43 ? NE ? B ARG 44 NE 12 1 Y 1 B ARG 43 ? CZ ? B ARG 44 CZ 13 1 Y 1 B ARG 43 ? NH1 ? B ARG 44 NH1 14 1 Y 1 B ARG 43 ? NH2 ? B ARG 44 NH2 15 1 Y 1 B GLU 47 ? CD ? B GLU 48 CD 16 1 Y 1 B GLU 47 ? OE1 ? B GLU 48 OE1 17 1 Y 1 B GLU 47 ? OE2 ? B GLU 48 OE2 18 1 Y 1 B LYS 48 ? NZ ? B LYS 49 NZ # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PKR _pdbx_initial_refinement_model.details 'PDB ENTRY 1PKR' #