HEADER DE NOVO PROTEIN 20-JAN-16 5HPN TITLE A CIRCULARLY PERMUTED PDUA FORMING AN ICOSAHEDRAL CAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERMUTED PDUA; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS PDUA, PROTEIN DESIGN, ICOSAHEDRON, CAGE, BMC, MCP, MICROCOMPARTMENT, KEYWDS 2 DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LEIBLY,J.JORDA,T.O.YEATES REVDAT 6 27-SEP-23 5HPN 1 REMARK REVDAT 5 27-NOV-19 5HPN 1 REMARK REVDAT 4 20-SEP-17 5HPN 1 REMARK REVDAT 3 20-APR-16 5HPN 1 REMARK REVDAT 2 13-APR-16 5HPN 1 JRNL REVDAT 1 06-APR-16 5HPN 0 JRNL AUTH J.JORDA,D.J.LEIBLY,M.C.THOMPSON,T.O.YEATES JRNL TITL STRUCTURE OF A NOVEL 13 NM DODECAHEDRAL NANOCAGE ASSEMBLED JRNL TITL 2 FROM A REDESIGNED BACTERIAL MICROCOMPARTMENT SHELL PROTEIN. JRNL REF CHEM.COMMUN.(CAMB.) V. 52 5041 2016 JRNL REFN ESSN 1364-548X JRNL PMID 26988700 JRNL DOI 10.1039/C6CC00851H REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 83.4732 - 5.8979 1.00 1410 157 0.2049 0.2337 REMARK 3 2 5.8979 - 4.6814 1.00 1302 144 0.1833 0.2296 REMARK 3 3 4.6814 - 4.0897 1.00 1275 142 0.1630 0.1951 REMARK 3 4 4.0897 - 3.7158 1.00 1270 142 0.1787 0.2309 REMARK 3 5 3.7158 - 3.4494 1.00 1267 140 0.2145 0.2816 REMARK 3 6 3.4494 - 3.2461 1.00 1251 140 0.2249 0.3141 REMARK 3 7 3.2461 - 3.0835 1.00 1249 139 0.2501 0.2906 REMARK 3 8 3.0835 - 2.9492 1.00 1226 136 0.2748 0.2779 REMARK 3 9 2.9492 - 2.8357 1.00 1239 138 0.2671 0.2880 REMARK 3 10 2.8357 - 2.7378 1.00 1240 137 0.2929 0.3588 REMARK 3 11 2.7378 - 2.6522 1.00 1242 138 0.2888 0.3635 REMARK 3 12 2.6522 - 2.5764 1.00 1220 135 0.3080 0.3305 REMARK 3 13 2.5764 - 2.5086 1.00 1244 139 0.2884 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2891 REMARK 3 ANGLE : 1.352 3934 REMARK 3 CHIRALITY : 0.060 509 REMARK 3 PLANARITY : 0.009 508 REMARK 3 DIHEDRAL : 13.447 970 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:89) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4370 112.9459 149.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.3738 REMARK 3 T33: 0.3726 T12: 0.0182 REMARK 3 T13: 0.0354 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 4.9943 L22: 5.2028 REMARK 3 L33: 4.0650 L12: 1.7068 REMARK 3 L13: -0.7112 L23: -0.6812 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: 0.4953 S13: -0.2125 REMARK 3 S21: -0.5531 S22: 0.0649 S23: -0.6264 REMARK 3 S31: 0.0913 S32: 0.0888 S33: 0.0943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 1:89) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8891 96.7967 129.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.5554 T22: 0.6924 REMARK 3 T33: 0.4516 T12: -0.0538 REMARK 3 T13: -0.0729 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 5.4588 L22: 5.7239 REMARK 3 L33: 3.8442 L12: 2.5627 REMARK 3 L13: 1.6870 L23: 0.6544 REMARK 3 S TENSOR REMARK 3 S11: 0.1645 S12: -0.1528 S13: -0.4035 REMARK 3 S21: -0.3011 S22: -0.0406 S23: -0.1611 REMARK 3 S31: 0.0903 S32: -0.1101 S33: -0.0764 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 1:89) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5287 93.7761 151.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.4770 T22: 0.6370 REMARK 3 T33: 0.3824 T12: 0.0451 REMARK 3 T13: -0.0829 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 4.7640 L22: 4.3499 REMARK 3 L33: 2.8438 L12: 1.4761 REMARK 3 L13: -0.9186 L23: -1.3838 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.2387 S13: -0.4772 REMARK 3 S21: -0.0593 S22: 0.0133 S23: -0.1069 REMARK 3 S31: 0.3377 S32: 0.1533 S33: 0.0239 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 1:89) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6860 108.7679 128.1747 REMARK 3 T TENSOR REMARK 3 T11: 0.7630 T22: 0.5387 REMARK 3 T33: 0.4302 T12: -0.0414 REMARK 3 T13: 0.0969 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.0665 L22: 4.7553 REMARK 3 L33: 4.3974 L12: 1.5183 REMARK 3 L13: -2.1089 L23: 0.0896 REMARK 3 S TENSOR REMARK 3 S11: -0.3904 S12: 0.5129 S13: -0.4240 REMARK 3 S21: -0.8598 S22: 0.1628 S23: -0.4771 REMARK 3 S31: 0.3991 S32: -0.1637 S33: 0.2595 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:89) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6694 103.9150 163.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.4184 T22: 0.4084 REMARK 3 T33: 0.3948 T12: 0.0602 REMARK 3 T13: -0.0540 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.4744 L22: 1.6016 REMARK 3 L33: 5.8140 L12: 0.4958 REMARK 3 L13: 0.2600 L23: -0.7009 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.0601 S13: -0.1735 REMARK 3 S21: -0.0289 S22: 0.0667 S23: -0.0462 REMARK 3 S31: 0.4683 S32: -0.1266 S33: -0.0945 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.509 REMARK 200 RESOLUTION RANGE LOW (A) : 83.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13350 REMARK 200 FOR THE DATA SET : 14.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE 0.1M TRIS PH8.5 REMARK 280 1.25% W/V PEG 10000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 72.25000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 72.25000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 72.25000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 72.25000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 72.25000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 72.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 0.000000 1.000000 0.000000 -72.25000 REMARK 350 BIOMT2 1 1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 216.75000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 216.75000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 216.75000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -72.25000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 216.75000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT2 5 0.000000 0.000000 1.000000 -72.25000 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 216.75000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT2 6 0.000000 0.000000 1.000000 -72.25000 REMARK 350 BIOMT3 6 0.000000 1.000000 0.000000 -72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 216.75000 REMARK 350 BIOMT3 7 0.000000 -1.000000 0.000000 216.75000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 72.25000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 216.75000 REMARK 350 BIOMT3 8 0.000000 1.000000 0.000000 -72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 9 0.000000 0.000000 1.000000 -72.25000 REMARK 350 BIOMT2 9 0.000000 1.000000 0.000000 -72.25000 REMARK 350 BIOMT3 9 -1.000000 0.000000 0.000000 72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 -72.25000 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 216.75000 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 216.75000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 -72.25000 REMARK 350 BIOMT3 11 1.000000 0.000000 0.000000 72.25000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 12 0.000000 0.000000 -1.000000 216.75000 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 216.75000 REMARK 350 BIOMT3 12 -1.000000 0.000000 0.000000 72.25000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 90 REMARK 465 GLY B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 19 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 GLY B 90 REMARK 465 GLY C 1 REMARK 465 LYS C 2 REMARK 465 GLY C 20 REMARK 465 SER C 21 REMARK 465 GLY C 90 REMARK 465 GLY D 1 REMARK 465 LYS D 2 REMARK 465 LEU D 18 REMARK 465 GLY D 19 REMARK 465 GLY D 20 REMARK 465 SER D 21 REMARK 465 GLY D 22 REMARK 465 GLY D 23 REMARK 465 GLY D 90 REMARK 465 GLY E 1 REMARK 465 LYS E 2 REMARK 465 GLY E 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 SER A 21 OG REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LEU B 18 CG CD1 CD2 REMARK 470 MET B 52 CG SD CE REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 MET C 52 CG SD CE REMARK 470 ARG C 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 15 CG CD OE1 OE2 REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 ILE D 17 CG1 CG2 CD1 REMARK 470 SER D 24 OG REMARK 470 GLU D 25 CG CD OE1 OE2 REMARK 470 MET D 52 CG SD CE REMARK 470 ARG E 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 16 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 31 O HOH C 101 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 47.09 36.58 REMARK 500 GLU B 15 48.21 -83.80 REMARK 500 GLU D 25 -62.35 65.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 101 DBREF 5HPN A 1 90 PDB 5HPN 5HPN 1 90 DBREF 5HPN B 1 90 PDB 5HPN 5HPN 1 90 DBREF 5HPN C 1 90 PDB 5HPN 5HPN 1 90 DBREF 5HPN D 1 90 PDB 5HPN 5HPN 1 90 DBREF 5HPN E 1 90 PDB 5HPN 5HPN 1 90 SEQRES 1 A 90 GLY LYS ALA VAL HIS VAL ILE PRO ARG PRO HIS THR ASP SEQRES 2 A 90 VAL GLU LYS ILE LEU GLY GLY SER GLY GLY SER GLU ALA SEQRES 3 A 90 LEU GLY MET VAL GLU THR LYS GLY LEU THR ALA ALA ILE SEQRES 4 A 90 GLU ALA ALA ASP ALA MET VAL ALA SER ALA ASN VAL MET SEQRES 5 A 90 LEU VAL GLY TYR GLU LYS ILE GLY SER GLY LEU VAL THR SEQRES 6 A 90 VAL ILE VAL ARG GLY ASP VAL GLY ALA VAL LYS ALA ALA SEQRES 7 A 90 THR ASP ALA GLY ALA ALA ALA ALA ARG ASN VAL GLY SEQRES 1 B 90 GLY LYS ALA VAL HIS VAL ILE PRO ARG PRO HIS THR ASP SEQRES 2 B 90 VAL GLU LYS ILE LEU GLY GLY SER GLY GLY SER GLU ALA SEQRES 3 B 90 LEU GLY MET VAL GLU THR LYS GLY LEU THR ALA ALA ILE SEQRES 4 B 90 GLU ALA ALA ASP ALA MET VAL ALA SER ALA ASN VAL MET SEQRES 5 B 90 LEU VAL GLY TYR GLU LYS ILE GLY SER GLY LEU VAL THR SEQRES 6 B 90 VAL ILE VAL ARG GLY ASP VAL GLY ALA VAL LYS ALA ALA SEQRES 7 B 90 THR ASP ALA GLY ALA ALA ALA ALA ARG ASN VAL GLY SEQRES 1 C 90 GLY LYS ALA VAL HIS VAL ILE PRO ARG PRO HIS THR ASP SEQRES 2 C 90 VAL GLU LYS ILE LEU GLY GLY SER GLY GLY SER GLU ALA SEQRES 3 C 90 LEU GLY MET VAL GLU THR LYS GLY LEU THR ALA ALA ILE SEQRES 4 C 90 GLU ALA ALA ASP ALA MET VAL ALA SER ALA ASN VAL MET SEQRES 5 C 90 LEU VAL GLY TYR GLU LYS ILE GLY SER GLY LEU VAL THR SEQRES 6 C 90 VAL ILE VAL ARG GLY ASP VAL GLY ALA VAL LYS ALA ALA SEQRES 7 C 90 THR ASP ALA GLY ALA ALA ALA ALA ARG ASN VAL GLY SEQRES 1 D 90 GLY LYS ALA VAL HIS VAL ILE PRO ARG PRO HIS THR ASP SEQRES 2 D 90 VAL GLU LYS ILE LEU GLY GLY SER GLY GLY SER GLU ALA SEQRES 3 D 90 LEU GLY MET VAL GLU THR LYS GLY LEU THR ALA ALA ILE SEQRES 4 D 90 GLU ALA ALA ASP ALA MET VAL ALA SER ALA ASN VAL MET SEQRES 5 D 90 LEU VAL GLY TYR GLU LYS ILE GLY SER GLY LEU VAL THR SEQRES 6 D 90 VAL ILE VAL ARG GLY ASP VAL GLY ALA VAL LYS ALA ALA SEQRES 7 D 90 THR ASP ALA GLY ALA ALA ALA ALA ARG ASN VAL GLY SEQRES 1 E 90 GLY LYS ALA VAL HIS VAL ILE PRO ARG PRO HIS THR ASP SEQRES 2 E 90 VAL GLU LYS ILE LEU GLY GLY SER GLY GLY SER GLU ALA SEQRES 3 E 90 LEU GLY MET VAL GLU THR LYS GLY LEU THR ALA ALA ILE SEQRES 4 E 90 GLU ALA ALA ASP ALA MET VAL ALA SER ALA ASN VAL MET SEQRES 5 E 90 LEU VAL GLY TYR GLU LYS ILE GLY SER GLY LEU VAL THR SEQRES 6 E 90 VAL ILE VAL ARG GLY ASP VAL GLY ALA VAL LYS ALA ALA SEQRES 7 E 90 THR ASP ALA GLY ALA ALA ALA ALA ARG ASN VAL GLY HET SO4 E 101 5 HETNAM SO4 SULFATE ION FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *17(H2 O) HELIX 1 AA1 HIS A 11 GLY A 19 1 9 HELIX 2 AA2 GLY A 34 ALA A 49 1 16 HELIX 3 AA3 ASP A 71 ASN A 88 1 18 HELIX 4 AA4 ASP B 13 ILE B 17 5 5 HELIX 5 AA5 GLY B 34 ALA B 49 1 16 HELIX 6 AA6 ASP B 71 ASN B 88 1 18 HELIX 7 AA7 HIS C 11 LEU C 18 1 8 HELIX 8 AA8 GLY C 34 ALA C 49 1 16 HELIX 9 AA9 ASP C 71 ASN C 88 1 18 HELIX 10 AB1 HIS D 11 ILE D 17 1 7 HELIX 11 AB2 GLY D 34 ALA D 49 1 16 HELIX 12 AB3 ASP D 71 ASN D 88 1 18 HELIX 13 AB4 HIS E 11 ILE E 17 1 7 HELIX 14 AB5 GLY E 34 ALA E 49 1 16 HELIX 15 AB6 ASP E 71 ASN E 88 1 18 SHEET 1 AA1 4 VAL A 4 PRO A 8 0 SHEET 2 AA1 4 ALA A 26 LYS A 33 -1 O MET A 29 N HIS A 5 SHEET 3 AA1 4 LEU A 63 GLY A 70 -1 O VAL A 64 N THR A 32 SHEET 4 AA1 4 VAL A 51 GLY A 60 -1 N VAL A 54 O ILE A 67 SHEET 1 AA2 4 VAL B 4 ILE B 7 0 SHEET 2 AA2 4 ALA B 26 LYS B 33 -1 O MET B 29 N HIS B 5 SHEET 3 AA2 4 LEU B 63 GLY B 70 -1 O VAL B 64 N THR B 32 SHEET 4 AA2 4 VAL B 51 GLY B 60 -1 N VAL B 54 O ILE B 67 SHEET 1 AA3 4 VAL C 4 ILE C 7 0 SHEET 2 AA3 4 ALA C 26 LYS C 33 -1 O MET C 29 N HIS C 5 SHEET 3 AA3 4 LEU C 63 GLY C 70 -1 O VAL C 68 N GLY C 28 SHEET 4 AA3 4 VAL C 51 GLY C 60 -1 N VAL C 54 O ILE C 67 SHEET 1 AA4 4 VAL D 4 ILE D 7 0 SHEET 2 AA4 4 LEU D 27 LYS D 33 -1 O MET D 29 N HIS D 5 SHEET 3 AA4 4 LEU D 63 ARG D 69 -1 O VAL D 64 N THR D 32 SHEET 4 AA4 4 MET D 52 GLY D 60 -1 N VAL D 54 O ILE D 67 SHEET 1 AA5 4 VAL E 4 PRO E 8 0 SHEET 2 AA5 4 ALA E 26 LYS E 33 -1 O MET E 29 N HIS E 5 SHEET 3 AA5 4 LEU E 63 GLY E 70 -1 O VAL E 64 N THR E 32 SHEET 4 AA5 4 VAL E 51 GLY E 60 -1 N GLU E 57 O THR E 65 CISPEP 1 GLY A 19 GLY A 20 0 -2.82 SITE 1 AC1 10 GLY A 60 SER A 61 GLY B 60 SER B 61 SITE 2 AC1 10 GLY C 60 SER C 61 GLY D 60 SER D 61 SITE 3 AC1 10 GLY E 60 SER E 61 CRYST1 144.500 144.500 144.500 90.00 90.00 90.00 P 42 3 2 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006920 0.00000