HEADER HYDROLASE 21-JAN-16 5HQD TITLE ACOUSTIC INJECTORS FOR DROP-ON-DEMAND SERIAL FEMTOSECOND TITLE 2 CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 274 KEYWDS HYDROLASE, METALLOPROTEINASE, XFEL EXPDTA X-RAY DIFFRACTION AUTHOR C.G.ROESSER,R.AGARWAL,M.ALLAIRE,R.ALONSO-MORI,B.ANDI,J.F.R.BACHEGA, AUTHOR 2 M.BOMMER,A.S.BREWSTER,M.C.BROWNE,R.CHATTERJEE,E.CHO,A.E.COHEN, AUTHOR 3 M.COWAN,S.DATWANI,V.L.DAVIDSON,J.DEFEVER,B.EATON,R.ELLSON,Y.FENG, AUTHOR 4 L.P.GHISLAIN,J.M.GLOWNIA,G.HAN,J.HATTNE,J.HELLMICH,A.HEROUX, AUTHOR 5 M.IBRAHIM,J.KERN,A.KUCZEWSKI,H.T.LEMKE,P.LIU,L.MAJLOF, AUTHOR 6 W.M.MCCLINTOCK,S.MYERS,S.NELSEN,J.OLECHNO,A.M.ORVILLE,N.K.SAUTER, AUTHOR 7 A.S.SOARES,M.S.SOLTIS,H.SONG,R.G.STEARNS,R.TRAN,Y.TSAI, AUTHOR 8 M.UERVIROJNANGKOORN,C.M.WILMOT,V.YACHANDRA,J.YANO,E.T.YUKL,D.ZHU, AUTHOR 9 A.ZOUNI REVDAT 7 19-JUN-24 5HQD 1 REMARK REVDAT 6 30-MAR-22 5HQD 1 REMARK REVDAT 5 14-NOV-18 5HQD 1 REMARK REVDAT 4 15-NOV-17 5HQD 1 REMARK REVDAT 3 20-APR-16 5HQD 1 JRNL REVDAT 2 06-APR-16 5HQD 1 JRNL REVDAT 1 10-FEB-16 5HQD 0 SPRSDE 10-FEB-16 5HQD 5F80 JRNL AUTH C.G.ROESSLER,R.AGARWAL,M.ALLAIRE,R.ALONSO-MORI,B.ANDI, JRNL AUTH 2 J.F.BACHEGA,M.BOMMER,A.S.BREWSTER,M.C.BROWNE,R.CHATTERJEE, JRNL AUTH 3 E.CHO,A.E.COHEN,M.COWAN,S.DATWANI,V.L.DAVIDSON,J.DEFEVER, JRNL AUTH 4 B.EATON,R.ELLSON,Y.FENG,L.P.GHISLAIN,J.M.GLOWNIA,G.HAN, JRNL AUTH 5 J.HATTNE,J.HELLMICH,A.HEROUX,M.IBRAHIM,J.KERN,A.KUCZEWSKI, JRNL AUTH 6 H.T.LEMKE,P.LIU,L.MAJLOF,W.M.MCCLINTOCK,S.MYERS,S.NELSEN, JRNL AUTH 7 J.OLECHNO,A.M.ORVILLE,N.K.SAUTER,A.S.SOARES,S.M.SOLTIS, JRNL AUTH 8 H.SONG,R.G.STEARNS,R.TRAN,Y.TSAI,M.UERVIROJNANGKOORN, JRNL AUTH 9 C.M.WILMOT,V.YACHANDRA,J.YANO,E.T.YUKL,D.ZHU,A.ZOUNI JRNL TITL ACOUSTIC INJECTORS FOR DROP-ON-DEMAND SERIAL FEMTOSECOND JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF STRUCTURE V. 24 631 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26996959 JRNL DOI 10.1016/J.STR.2016.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.752 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.364 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.835 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.751 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2490 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2197 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3390 ; 1.586 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5036 ; 2.078 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.447 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.730 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;18.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2955 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 0.611 ; 1.345 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1262 ; 0.611 ; 1.345 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1577 ; 1.077 ; 2.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1578 ; 1.076 ; 2.016 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 0.494 ; 1.376 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1228 ; 0.493 ; 1.377 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1814 ; 0.856 ; 2.049 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3518 ; 3.412 ;11.259 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3460 ; 3.290 ;11.263 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : XPP REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE XPP REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.36 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD XPP REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 80.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BATCH CRYSTALLIZATION 15% AMMONIUM REMARK 280 SULFATE, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.17467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.34933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.76200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.93667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.58733 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.17467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.34933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.93667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.76200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.58733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 677 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 744 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 765 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 166 ZN ZN A 406 1.61 REMARK 500 O VAL A 148 OG1 THR A 152 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 619 O HOH A 619 10664 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -57.38 53.16 REMARK 500 LYS A 45 46.21 39.08 REMARK 500 PHE A 62 71.65 -116.59 REMARK 500 LYS A 85 -71.40 -62.39 REMARK 500 ASN A 89 57.19 38.81 REMARK 500 SER A 92 174.72 59.36 REMARK 500 ASN A 96 39.66 -145.22 REMARK 500 SER A 107 -152.45 52.23 REMARK 500 ASN A 111 48.59 -85.59 REMARK 500 SER A 118 -21.75 -151.05 REMARK 500 GLN A 128 -63.38 -140.22 REMARK 500 VAL A 148 -47.70 -28.09 REMARK 500 THR A 152 -94.48 -117.69 REMARK 500 ASN A 159 -134.97 49.94 REMARK 500 ASN A 181 83.46 54.54 REMARK 500 ASN A 183 73.55 39.55 REMARK 500 THR A 194 72.92 29.31 REMARK 500 ASP A 207 75.87 -158.06 REMARK 500 LYS A 219 30.00 -83.38 REMARK 500 ILE A 232 -61.34 -92.10 REMARK 500 PRO A 277 -36.42 -32.26 REMARK 500 TYR A 296 13.44 -147.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 750 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 751 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 752 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A 763 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH A 765 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 766 DISTANCE = 8.60 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 11.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 50.8 REMARK 620 3 ASP A 59 OD1 115.9 66.8 REMARK 620 4 GLN A 61 O 97.1 78.7 82.6 REMARK 620 5 HOH A 647 O 98.3 106.8 85.4 163.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 74.3 REMARK 620 3 GLU A 177 OE2 121.8 50.0 REMARK 620 4 ASP A 185 OD1 143.3 134.9 93.9 REMARK 620 5 ASP A 185 OD2 160.7 93.2 52.7 43.0 REMARK 620 6 GLU A 187 O 74.8 143.1 142.6 81.7 121.5 REMARK 620 7 GLU A 190 OE1 80.3 109.8 129.1 69.4 90.6 84.2 REMARK 620 8 GLU A 190 OE2 98.6 71.5 80.6 77.3 63.0 133.2 49.4 REMARK 620 9 HOH A 504 O 95.9 83.7 66.0 107.5 97.2 79.9 164.1 146.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 101.6 REMARK 620 3 HOH A 513 O 136.9 108.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 183 O REMARK 620 2 ASP A 185 OD2 73.0 REMARK 620 3 GLU A 190 OE2 104.6 56.7 REMARK 620 4 HOH A 506 O 62.6 65.1 47.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 68.0 REMARK 620 3 THR A 194 OG1 75.0 73.7 REMARK 620 4 ILE A 197 O 132.2 68.2 109.7 REMARK 620 5 ASP A 200 OD1 120.7 135.7 68.4 103.8 REMARK 620 6 HOH A 569 O 78.2 144.5 108.3 136.3 71.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 DBREF 5HQD A 1 316 UNP V5IRV7 V5IRV7_THETH 1 316 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET ZN A 406 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA 5(CA 2+) FORMUL 7 ZN ZN 2+ FORMUL 8 HOH *269(H2 O) HELIX 1 AA1 ALA A 64 TYR A 66 5 3 HELIX 2 AA2 ASP A 67 VAL A 87 1 21 HELIX 3 AA3 PRO A 132 GLY A 135 5 4 HELIX 4 AA4 GLY A 136 TYR A 151 1 16 HELIX 5 AA5 GLN A 158 ASN A 181 1 24 HELIX 6 AA6 ASP A 207 GLY A 212 5 6 HELIX 7 AA7 GLN A 225 VAL A 230 1 6 HELIX 8 AA8 ASN A 233 GLY A 247 1 15 HELIX 9 AA9 ARG A 260 TYR A 274 1 15 HELIX 10 AB1 ASN A 280 GLY A 297 1 18 HELIX 11 AB2 SER A 300 GLY A 314 1 15 SHEET 1 AA1 5 ALA A 56 ASP A 57 0 SHEET 2 AA1 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 AA1 5 GLN A 17 TYR A 24 -1 N THR A 23 O TYR A 29 SHEET 4 AA1 5 THR A 4 ARG A 11 -1 N GLY A 8 O ILE A 20 SHEET 5 AA1 5 GLN A 61 PHE A 62 1 O PHE A 62 N ARG A 11 SHEET 1 AA2 3 GLN A 31 ASP A 32 0 SHEET 2 AA2 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA2 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AA3 5 GLN A 31 ASP A 32 0 SHEET 2 AA3 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AA3 5 ILE A 100 VAL A 104 1 O SER A 102 N TYR A 42 SHEET 4 AA3 5 MET A 120 TYR A 122 1 O TYR A 122 N SER A 103 SHEET 5 AA3 5 ALA A 113 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 AA4 2 GLU A 187 ILE A 188 0 SHEET 2 AA4 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 LINK OD1 ASP A 57 CA CA A 403 1555 1555 2.46 LINK OD2 ASP A 57 CA CA A 403 1555 1555 2.63 LINK OD1 ASP A 59 CA CA A 403 1555 1555 2.08 LINK O GLN A 61 CA CA A 403 1555 1555 2.64 LINK OD2 ASP A 138 CA CA A 401 1555 1555 2.74 LINK NE2 HIS A 142 ZN ZN A 406 1555 1555 2.23 LINK NE2 HIS A 146 ZN ZN A 406 1555 1555 2.07 LINK OE1 GLU A 177 CA CA A 401 1555 1555 2.59 LINK OE2 GLU A 177 CA CA A 401 1555 1555 2.63 LINK O ASN A 183 CA CA A 402 1555 1555 2.88 LINK OD1 ASP A 185 CA CA A 401 1555 1555 2.94 LINK OD2 ASP A 185 CA CA A 401 1555 1555 3.04 LINK OD2 ASP A 185 CA CA A 402 1555 1555 3.19 LINK O GLU A 187 CA CA A 401 1555 1555 2.34 LINK OE1 GLU A 190 CA CA A 401 1555 1555 2.51 LINK OE2 GLU A 190 CA CA A 401 1555 1555 2.67 LINK OE2 GLU A 190 CA CA A 402 1555 1555 3.13 LINK O TYR A 193 CA CA A 404 1555 1555 2.73 LINK O THR A 194 CA CA A 404 1555 1555 2.39 LINK OG1 THR A 194 CA CA A 404 1555 1555 2.18 LINK O ILE A 197 CA CA A 404 1555 1555 2.15 LINK OD1 ASP A 200 CA CA A 404 1555 1555 2.14 LINK CA CA A 401 O HOH A 504 1555 1555 2.46 LINK CA CA A 402 O HOH A 506 1555 1555 2.50 LINK CA CA A 403 O HOH A 647 1555 1555 2.54 LINK CA CA A 404 O HOH A 569 1555 1555 2.50 LINK ZN ZN A 406 O HOH A 513 1555 1555 2.68 CISPEP 1 LEU A 50 PRO A 51 0 -4.90 SITE 1 AC1 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 6 GLU A 190 HOH A 504 SITE 1 AC2 5 ASN A 183 ASP A 185 GLU A 190 ASP A 191 SITE 2 AC2 5 HOH A 506 SITE 1 AC3 4 ASP A 57 ASP A 59 GLN A 61 HOH A 647 SITE 1 AC4 5 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 5 HOH A 569 SITE 1 AC5 4 HIS A 142 HIS A 146 GLU A 166 HOH A 513 CRYST1 92.707 92.707 129.524 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010787 0.006228 0.000000 0.00000 SCALE2 0.000000 0.012455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007721 0.00000