HEADER HYDROLASE 21-JAN-16 5HQN TITLE CATALYTIC DOMAIN OF MURINE ACID SPHINGOMYELINASE (ASMASE, ASM, SMPD1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPHINGOMYELIN PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 165-627); COMPND 5 SYNONYM: ACID SPHINGOMYELINASE,ASMASE; COMPND 6 EC: 3.1.4.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMPD1, ASM; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SMPD1, ASM, ASMASE, SPHINGOMYELINASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,L.X.HEINZ,G.SUPERTI-FURGA,B.NAGAR REVDAT 3 29-JUL-20 5HQN 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 03-AUG-16 5HQN 1 JRNL REVDAT 1 06-JUL-16 5HQN 0 JRNL AUTH A.GORELIK,K.ILLES,L.X.HEINZ,G.SUPERTI-FURGA,B.NAGAR JRNL TITL CRYSTAL STRUCTURE OF MAMMALIAN ACID SPHINGOMYELINASE. JRNL REF NAT COMMUN V. 7 12196 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27435900 JRNL DOI 10.1038/NCOMMS12196 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8688 - 5.7766 1.00 3746 148 0.1933 0.2301 REMARK 3 2 5.7766 - 4.5874 1.00 3681 144 0.1726 0.1989 REMARK 3 3 4.5874 - 4.0082 1.00 3661 145 0.1767 0.2229 REMARK 3 4 4.0082 - 3.6420 1.00 3672 145 0.1940 0.2489 REMARK 3 5 3.6420 - 3.3811 1.00 3669 144 0.2133 0.2785 REMARK 3 6 3.3811 - 3.1819 1.00 3617 142 0.2439 0.2927 REMARK 3 7 3.1819 - 3.0226 1.00 3693 146 0.2612 0.3267 REMARK 3 8 3.0226 - 2.8911 1.00 3657 145 0.2705 0.3192 REMARK 3 9 2.8911 - 2.7798 1.00 3628 142 0.2740 0.3159 REMARK 3 10 2.7798 - 2.6839 1.00 3670 144 0.2946 0.3147 REMARK 3 11 2.6839 - 2.6000 1.00 3642 144 0.3127 0.3604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7572 REMARK 3 ANGLE : 0.669 10385 REMARK 3 CHIRALITY : 0.042 1114 REMARK 3 PLANARITY : 0.004 1330 REMARK 3 DIHEDRAL : 10.650 4405 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM PHOSPHATE, POTASSIUM PHOSPHATE, REMARK 280 MES, SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.42200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.64850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.42200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.64850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 155 REMARK 465 ARG A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 LYS A 163 REMARK 465 LEU A 164 REMARK 465 HIS A 165 REMARK 465 TRP A 166 REMARK 465 MET A 609 REMARK 465 PRO A 610 REMARK 465 ASN A 611 REMARK 465 GLY A 612 REMARK 465 SER A 613 REMARK 465 LEU A 614 REMARK 465 PRO A 615 REMARK 465 ASP A 616 REMARK 465 ALA A 617 REMARK 465 ASN A 618 REMARK 465 ARG A 619 REMARK 465 LEU A 620 REMARK 465 TRP A 621 REMARK 465 SER A 622 REMARK 465 ARG A 623 REMARK 465 PRO A 624 REMARK 465 LEU A 625 REMARK 465 LEU A 626 REMARK 465 CYS A 627 REMARK 465 ASP B 155 REMARK 465 ARG B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 LYS B 163 REMARK 465 LEU B 164 REMARK 465 HIS B 165 REMARK 465 TRP B 166 REMARK 465 MET B 609 REMARK 465 PRO B 610 REMARK 465 ASN B 611 REMARK 465 GLY B 612 REMARK 465 SER B 613 REMARK 465 LEU B 614 REMARK 465 PRO B 615 REMARK 465 ASP B 616 REMARK 465 ALA B 617 REMARK 465 ASN B 618 REMARK 465 ARG B 619 REMARK 465 LEU B 620 REMARK 465 TRP B 621 REMARK 465 SER B 622 REMARK 465 ARG B 623 REMARK 465 PRO B 624 REMARK 465 LEU B 625 REMARK 465 LEU B 626 REMARK 465 CYS B 627 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 482 HZ3 LYS B 574 1.53 REMARK 500 HH TYR A 245 OD1 ASN A 490 1.55 REMARK 500 HH TYR B 245 OD1 ASN B 490 1.59 REMARK 500 OD2 ASP A 276 O HOH A 801 2.02 REMARK 500 OD2 ASP B 276 O HOH B 801 2.02 REMARK 500 O3 NAG C 1 O5 NAG C 2 2.13 REMARK 500 O ASP B 396 O4 FUC G 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 206 76.74 45.55 REMARK 500 CYS A 224 -167.56 -113.14 REMARK 500 LYS A 237 30.10 -90.60 REMARK 500 SER A 246 -173.56 -170.04 REMARK 500 ALA A 265 24.77 -75.34 REMARK 500 ASP A 276 73.22 52.78 REMARK 500 HIS A 280 30.10 -89.58 REMARK 500 ASN A 323 -0.20 73.18 REMARK 500 ASP A 396 62.34 37.35 REMARK 500 HIS A 423 -68.01 -97.34 REMARK 500 HIS A 455 -46.88 76.72 REMARK 500 HIS A 457 -2.35 67.72 REMARK 500 PHE A 486 109.80 -49.65 REMARK 500 ALA A 537 -70.56 -46.73 REMARK 500 HIS B 206 74.16 49.64 REMARK 500 TYR B 218 61.78 -112.58 REMARK 500 CYS B 224 -162.21 -120.24 REMARK 500 ALA B 265 21.45 -78.30 REMARK 500 ASP B 276 66.12 62.18 REMARK 500 ASP B 396 64.51 38.08 REMARK 500 HIS B 423 -65.97 -99.40 REMARK 500 HIS B 455 -48.54 71.86 REMARK 500 HIS B 457 -1.35 67.36 REMARK 500 GLU B 460 -162.29 -162.79 REMARK 500 PHE B 486 103.60 -54.97 REMARK 500 SER B 596 67.17 -102.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD1 REMARK 620 2 HIS A 206 NE2 104.4 REMARK 620 3 ASP A 276 OD2 74.2 103.6 REMARK 620 4 HIS A 457 NE2 87.5 93.1 157.7 REMARK 620 5 PO4 A 710 O1 159.2 94.1 92.3 101.3 REMARK 620 6 HOH A 801 O 77.5 162.9 60.2 103.9 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD2 REMARK 620 2 ASN A 316 OD1 118.5 REMARK 620 3 HIS A 423 NE2 87.4 84.0 REMARK 620 4 HIS A 455 ND1 145.5 94.6 86.8 REMARK 620 5 PO4 A 710 O3 89.8 97.9 177.2 95.1 REMARK 620 6 HOH A 801 O 56.6 167.8 106.2 92.7 71.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 204 OD1 REMARK 620 2 HIS B 206 NE2 104.0 REMARK 620 3 ASP B 276 OD2 70.4 102.7 REMARK 620 4 HIS B 457 NE2 86.0 96.2 152.6 REMARK 620 5 PO4 B 712 O3 150.9 103.8 95.5 99.1 REMARK 620 6 HOH B 801 O 80.7 157.2 57.4 106.3 70.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD2 REMARK 620 2 ASN B 316 OD1 117.8 REMARK 620 3 HIS B 423 NE2 84.2 90.1 REMARK 620 4 HIS B 455 ND1 147.9 93.9 91.2 REMARK 620 5 PO4 B 712 O2 92.7 89.5 176.2 92.5 REMARK 620 6 HOH B 801 O 59.3 160.4 108.3 92.6 71.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FI9 RELATED DB: PDB REMARK 900 RELATED ID: 5FIB RELATED DB: PDB REMARK 900 RELATED ID: 5FIC RELATED DB: PDB DBREF 5HQN A 165 627 UNP Q04519 ASM_MOUSE 165 627 DBREF 5HQN B 165 627 UNP Q04519 ASM_MOUSE 165 627 SEQADV 5HQN ASP A 155 UNP Q04519 EXPRESSION TAG SEQADV 5HQN ARG A 156 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 157 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 158 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 159 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 160 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 161 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS A 162 UNP Q04519 EXPRESSION TAG SEQADV 5HQN LYS A 163 UNP Q04519 EXPRESSION TAG SEQADV 5HQN LEU A 164 UNP Q04519 EXPRESSION TAG SEQADV 5HQN ASP B 155 UNP Q04519 EXPRESSION TAG SEQADV 5HQN ARG B 156 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 157 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 158 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 159 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 160 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 161 UNP Q04519 EXPRESSION TAG SEQADV 5HQN HIS B 162 UNP Q04519 EXPRESSION TAG SEQADV 5HQN LYS B 163 UNP Q04519 EXPRESSION TAG SEQADV 5HQN LEU B 164 UNP Q04519 EXPRESSION TAG SEQRES 1 A 473 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU HIS TRP ASP SEQRES 2 A 473 ILE PHE SER THR TRP ASN ILE SER LEU PRO SER VAL PRO SEQRES 3 A 473 LYS PRO PRO PRO LYS PRO PRO SER PRO PRO ALA PRO GLY SEQRES 4 A 473 ALA PRO VAL SER ARG VAL LEU PHE LEU THR ASP LEU HIS SEQRES 5 A 473 TRP ASP HIS GLU TYR LEU GLU GLY THR ASP PRO TYR CYS SEQRES 6 A 473 ALA ASP PRO LEU CYS CYS ARG ARG GLY SER GLY TRP PRO SEQRES 7 A 473 PRO ASN SER GLN LYS GLY ALA GLY PHE TRP GLY GLU TYR SEQRES 8 A 473 SER LYS CYS ASP LEU PRO LEU ARG THR LEU GLU SER LEU SEQRES 9 A 473 LEU LYS GLY LEU GLY PRO ALA GLY PRO PHE GLU MET VAL SEQRES 10 A 473 TYR TRP THR GLY ASP ILE PRO ALA HIS ASP VAL TRP GLN SEQRES 11 A 473 GLN SER ARG GLN ASP GLN LEU ARG ALA LEU THR THR ILE SEQRES 12 A 473 THR ASP LEU VAL ARG LYS PHE LEU GLY PRO VAL PRO VAL SEQRES 13 A 473 TYR PRO ALA VAL GLY ASN HIS GLU SER THR PRO VAL ASN SEQRES 14 A 473 GLY PHE PRO PRO PRO PHE ILE LYS GLY ASN GLN SER SER SEQRES 15 A 473 GLN TRP LEU TYR GLU ALA MET ALA LYS ALA TRP GLU PRO SEQRES 16 A 473 TRP LEU PRO ALA ASP ALA LEU HIS THR LEU ARG ILE GLY SEQRES 17 A 473 GLY PHE TYR ALA LEU THR PRO ARG PRO GLY LEU ARG LEU SEQRES 18 A 473 ILE SER LEU ASN MET ASN PHE CYS SER ARG GLU ASN PHE SEQRES 19 A 473 TRP LEU LEU ILE ASN SER THR ASP PRO ALA GLY GLN LEU SEQRES 20 A 473 GLN TRP LEU VAL GLU GLU LEU GLN ALA ALA GLU ASN ARG SEQRES 21 A 473 GLY ASP LYS VAL HIS ILE ILE GLY HIS ILE PRO PRO GLY SEQRES 22 A 473 HIS CYS LEU LYS SER TRP SER TRP ASN TYR TYR LYS ILE SEQRES 23 A 473 ILE ALA ARG TYR GLU ASN THR LEU ALA GLY GLN PHE PHE SEQRES 24 A 473 GLY HIS THR HIS VAL ASP GLU PHE GLU ILE PHE TYR ASP SEQRES 25 A 473 GLU GLU THR LEU SER ARG PRO LEU ALA VAL ALA PHE LEU SEQRES 26 A 473 ALA PRO SER ALA THR THR PHE ILE ASN LEU ASN PRO GLY SEQRES 27 A 473 TYR ARG VAL TYR GLN ILE ASP GLY ASN TYR PRO GLY SER SEQRES 28 A 473 SER HIS VAL VAL LEU ASP HIS GLU THR TYR ILE LEU ASN SEQRES 29 A 473 LEU THR GLN ALA ASN ALA ALA GLY GLY THR PRO SER TRP SEQRES 30 A 473 LYS ARG LEU TYR ARG ALA ARG GLU THR TYR GLY LEU PRO SEQRES 31 A 473 ASP ALA MET PRO ALA SER TRP HIS ASN LEU VAL TYR ARG SEQRES 32 A 473 MET ARG ASP ASP GLU GLN LEU PHE GLN THR PHE TRP PHE SEQRES 33 A 473 LEU TYR HIS LYS GLY HIS PRO PRO SER GLU PRO CYS GLY SEQRES 34 A 473 THR PRO CYS ARG LEU ALA THR LEU CYS ALA GLN LEU SER SEQRES 35 A 473 ALA ARG ALA ASP SER PRO ALA LEU CYS ARG HIS LEU MET SEQRES 36 A 473 PRO ASN GLY SER LEU PRO ASP ALA ASN ARG LEU TRP SER SEQRES 37 A 473 ARG PRO LEU LEU CYS SEQRES 1 B 473 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU HIS TRP ASP SEQRES 2 B 473 ILE PHE SER THR TRP ASN ILE SER LEU PRO SER VAL PRO SEQRES 3 B 473 LYS PRO PRO PRO LYS PRO PRO SER PRO PRO ALA PRO GLY SEQRES 4 B 473 ALA PRO VAL SER ARG VAL LEU PHE LEU THR ASP LEU HIS SEQRES 5 B 473 TRP ASP HIS GLU TYR LEU GLU GLY THR ASP PRO TYR CYS SEQRES 6 B 473 ALA ASP PRO LEU CYS CYS ARG ARG GLY SER GLY TRP PRO SEQRES 7 B 473 PRO ASN SER GLN LYS GLY ALA GLY PHE TRP GLY GLU TYR SEQRES 8 B 473 SER LYS CYS ASP LEU PRO LEU ARG THR LEU GLU SER LEU SEQRES 9 B 473 LEU LYS GLY LEU GLY PRO ALA GLY PRO PHE GLU MET VAL SEQRES 10 B 473 TYR TRP THR GLY ASP ILE PRO ALA HIS ASP VAL TRP GLN SEQRES 11 B 473 GLN SER ARG GLN ASP GLN LEU ARG ALA LEU THR THR ILE SEQRES 12 B 473 THR ASP LEU VAL ARG LYS PHE LEU GLY PRO VAL PRO VAL SEQRES 13 B 473 TYR PRO ALA VAL GLY ASN HIS GLU SER THR PRO VAL ASN SEQRES 14 B 473 GLY PHE PRO PRO PRO PHE ILE LYS GLY ASN GLN SER SER SEQRES 15 B 473 GLN TRP LEU TYR GLU ALA MET ALA LYS ALA TRP GLU PRO SEQRES 16 B 473 TRP LEU PRO ALA ASP ALA LEU HIS THR LEU ARG ILE GLY SEQRES 17 B 473 GLY PHE TYR ALA LEU THR PRO ARG PRO GLY LEU ARG LEU SEQRES 18 B 473 ILE SER LEU ASN MET ASN PHE CYS SER ARG GLU ASN PHE SEQRES 19 B 473 TRP LEU LEU ILE ASN SER THR ASP PRO ALA GLY GLN LEU SEQRES 20 B 473 GLN TRP LEU VAL GLU GLU LEU GLN ALA ALA GLU ASN ARG SEQRES 21 B 473 GLY ASP LYS VAL HIS ILE ILE GLY HIS ILE PRO PRO GLY SEQRES 22 B 473 HIS CYS LEU LYS SER TRP SER TRP ASN TYR TYR LYS ILE SEQRES 23 B 473 ILE ALA ARG TYR GLU ASN THR LEU ALA GLY GLN PHE PHE SEQRES 24 B 473 GLY HIS THR HIS VAL ASP GLU PHE GLU ILE PHE TYR ASP SEQRES 25 B 473 GLU GLU THR LEU SER ARG PRO LEU ALA VAL ALA PHE LEU SEQRES 26 B 473 ALA PRO SER ALA THR THR PHE ILE ASN LEU ASN PRO GLY SEQRES 27 B 473 TYR ARG VAL TYR GLN ILE ASP GLY ASN TYR PRO GLY SER SEQRES 28 B 473 SER HIS VAL VAL LEU ASP HIS GLU THR TYR ILE LEU ASN SEQRES 29 B 473 LEU THR GLN ALA ASN ALA ALA GLY GLY THR PRO SER TRP SEQRES 30 B 473 LYS ARG LEU TYR ARG ALA ARG GLU THR TYR GLY LEU PRO SEQRES 31 B 473 ASP ALA MET PRO ALA SER TRP HIS ASN LEU VAL TYR ARG SEQRES 32 B 473 MET ARG ASP ASP GLU GLN LEU PHE GLN THR PHE TRP PHE SEQRES 33 B 473 LEU TYR HIS LYS GLY HIS PRO PRO SER GLU PRO CYS GLY SEQRES 34 B 473 THR PRO CYS ARG LEU ALA THR LEU CYS ALA GLN LEU SER SEQRES 35 B 473 ALA ARG ALA ASP SER PRO ALA LEU CYS ARG HIS LEU MET SEQRES 36 B 473 PRO ASN GLY SER LEU PRO ASP ALA ASN ARG LEU TRP SER SEQRES 37 B 473 ARG PRO LEU LEU CYS HET NAG C 1 27 HET NAG C 2 28 HET NAG D 1 26 HET NAG D 2 28 HET FUC D 3 21 HET NAG E 1 27 HET NAG E 2 28 HET NAG F 1 26 HET NAG F 2 27 HET FUC F 3 21 HET NAG G 1 26 HET NAG G 2 28 HET FUC G 3 21 HET NAG H 1 27 HET NAG H 2 28 HET ZN A 701 1 HET ZN A 702 1 HET PO4 A 710 5 HET ZN B 701 1 HET ZN B 702 1 HET NAG B 703 28 HET PO4 B 712 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 4 FUC 3(C6 H12 O5) FORMUL 9 ZN 4(ZN 2+) FORMUL 11 PO4 2(O4 P 3-) FORMUL 16 HOH *74(H2 O) HELIX 1 AA1 ASN A 234 GLY A 238 5 5 HELIX 2 AA2 PRO A 251 GLY A 261 1 11 HELIX 3 AA3 LEU A 262 GLY A 266 5 5 HELIX 4 AA4 SER A 286 GLY A 306 1 21 HELIX 5 AA5 SER A 336 GLU A 348 1 13 HELIX 6 AA6 PRO A 352 GLY A 363 1 12 HELIX 7 AA7 ASN A 379 CYS A 383 5 5 HELIX 8 AA8 ASN A 387 ILE A 392 5 6 HELIX 9 AA9 ASP A 396 ALA A 398 5 3 HELIX 10 AB1 GLY A 399 GLY A 415 1 17 HELIX 11 AB2 PRO A 425 CYS A 429 5 5 HELIX 12 AB3 LEU A 430 TYR A 444 1 15 HELIX 13 AB4 ASN A 518 ASN A 523 1 6 HELIX 14 AB5 ALA A 537 GLY A 542 1 6 HELIX 15 AB6 MET A 547 ASP A 561 1 15 HELIX 16 AB7 ASP A 561 HIS A 573 1 13 HELIX 17 AB8 GLY A 583 SER A 596 1 14 HELIX 18 AB9 SER A 601 ARG A 606 5 6 HELIX 19 AC1 ARG B 226 GLY B 230 5 5 HELIX 20 AC2 ASN B 234 GLY B 238 5 5 HELIX 21 AC3 PRO B 251 GLY B 261 1 11 HELIX 22 AC4 LEU B 262 GLY B 266 5 5 HELIX 23 AC5 ASP B 281 GLN B 285 5 5 HELIX 24 AC6 SER B 286 GLY B 306 1 21 HELIX 25 AC7 SER B 336 TRP B 347 1 12 HELIX 26 AC8 PRO B 352 GLY B 363 1 12 HELIX 27 AC9 ASN B 379 SER B 384 5 6 HELIX 28 AD1 ASN B 387 ILE B 392 5 6 HELIX 29 AD2 ASP B 396 ALA B 398 5 3 HELIX 30 AD3 GLY B 399 GLY B 415 1 17 HELIX 31 AD4 PRO B 425 CYS B 429 5 5 HELIX 32 AD5 LEU B 430 TYR B 444 1 15 HELIX 33 AD6 ASN B 518 ASN B 523 1 6 HELIX 34 AD7 ALA B 537 GLY B 542 1 6 HELIX 35 AD8 MET B 547 ASP B 561 1 15 HELIX 36 AD9 ASP B 561 HIS B 573 1 13 HELIX 37 AE1 GLY B 583 GLN B 594 1 12 HELIX 38 AE2 SER B 601 ARG B 606 5 6 SHEET 1 AA1 6 VAL A 310 ALA A 313 0 SHEET 2 AA1 6 MET A 270 THR A 274 1 N VAL A 271 O TYR A 311 SHEET 3 AA1 6 VAL A 196 LEU A 202 1 N LEU A 202 O TYR A 272 SHEET 4 AA1 6 GLY A 492 ASP A 499 -1 O TYR A 496 N VAL A 199 SHEET 5 AA1 6 VAL A 509 ILE A 516 -1 O ASP A 511 N GLN A 497 SHEET 6 AA1 6 LYS A 532 ARG A 536 -1 O LEU A 534 N THR A 514 SHEET 1 AA2 6 TYR A 365 LEU A 367 0 SHEET 2 AA2 6 LEU A 373 SER A 377 -1 O LEU A 375 N LEU A 367 SHEET 3 AA2 6 LYS A 417 ILE A 421 1 O HIS A 419 N ILE A 376 SHEET 4 AA2 6 LEU A 448 PHE A 453 1 O ALA A 449 N VAL A 418 SHEET 5 AA2 6 PRO A 473 LEU A 479 1 O PHE A 478 N GLN A 451 SHEET 6 AA2 6 GLU A 460 TYR A 465 -1 N GLU A 462 O ALA A 477 SHEET 1 AA3 6 VAL B 310 PRO B 312 0 SHEET 2 AA3 6 MET B 270 TRP B 273 1 N VAL B 271 O TYR B 311 SHEET 3 AA3 6 VAL B 196 LEU B 202 1 N LEU B 202 O TYR B 272 SHEET 4 AA3 6 GLY B 492 ASP B 499 -1 O ARG B 494 N PHE B 201 SHEET 5 AA3 6 VAL B 509 ILE B 516 -1 O LEU B 510 N GLN B 497 SHEET 6 AA3 6 LYS B 532 ARG B 536 -1 O LEU B 534 N THR B 514 SHEET 1 AA4 6 TYR B 365 ARG B 370 0 SHEET 2 AA4 6 LEU B 373 SER B 377 -1 O LEU B 375 N LEU B 367 SHEET 3 AA4 6 LYS B 417 ILE B 421 1 O HIS B 419 N ILE B 376 SHEET 4 AA4 6 LEU B 448 PHE B 453 1 O ALA B 449 N VAL B 418 SHEET 5 AA4 6 PRO B 473 LEU B 479 1 O PHE B 478 N GLN B 451 SHEET 6 AA4 6 GLU B 460 TYR B 465 -1 N GLU B 462 O ALA B 477 SSBOND 1 CYS A 219 CYS A 224 1555 1555 2.04 SSBOND 2 CYS A 225 CYS A 248 1555 1555 2.03 SSBOND 3 CYS A 383 CYS A 429 1555 1555 2.04 SSBOND 4 CYS A 582 CYS A 586 1555 1555 2.04 SSBOND 5 CYS A 592 CYS A 605 1555 1555 2.03 SSBOND 6 CYS B 219 CYS B 224 1555 1555 2.04 SSBOND 7 CYS B 225 CYS B 248 1555 1555 2.03 SSBOND 8 CYS B 383 CYS B 429 1555 1555 2.04 SSBOND 9 CYS B 582 CYS B 586 1555 1555 2.03 SSBOND 10 CYS B 592 CYS B 605 1555 1555 2.03 LINK ND2 ASN A 333 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 393 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 518 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 173 C1 NAG B 703 1555 1555 1.45 LINK ND2 ASN B 333 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 393 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 518 C1 NAG H 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.46 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK OD1 ASP A 204 ZN ZN A 701 1555 1555 2.01 LINK NE2 HIS A 206 ZN ZN A 701 1555 1555 2.07 LINK OD2 ASP A 276 ZN ZN A 701 1555 1555 2.03 LINK OD2 ASP A 276 ZN ZN A 702 1555 1555 2.09 LINK OD1 ASN A 316 ZN ZN A 702 1555 1555 2.05 LINK NE2 HIS A 423 ZN ZN A 702 1555 1555 2.03 LINK ND1 HIS A 455 ZN ZN A 702 1555 1555 2.05 LINK NE2 HIS A 457 ZN ZN A 701 1555 1555 2.03 LINK ZN ZN A 701 O1 PO4 A 710 1555 1555 2.03 LINK ZN ZN A 701 O HOH A 801 1555 1555 1.99 LINK ZN ZN A 702 O3 PO4 A 710 1555 1555 1.89 LINK ZN ZN A 702 O HOH A 801 1555 1555 2.16 LINK OD1 ASP B 204 ZN ZN B 701 1555 1555 1.97 LINK NE2 HIS B 206 ZN ZN B 701 1555 1555 2.07 LINK OD2 ASP B 276 ZN ZN B 701 1555 1555 2.07 LINK OD2 ASP B 276 ZN ZN B 702 1555 1555 2.09 LINK OD1 ASN B 316 ZN ZN B 702 1555 1555 2.01 LINK NE2 HIS B 423 ZN ZN B 702 1555 1555 2.03 LINK ND1 HIS B 455 ZN ZN B 702 1555 1555 2.05 LINK NE2 HIS B 457 ZN ZN B 701 1555 1555 1.98 LINK ZN ZN B 701 O3 PO4 B 712 1555 1555 2.11 LINK ZN ZN B 701 O HOH B 801 1555 1555 2.14 LINK ZN ZN B 702 O2 PO4 B 712 1555 1555 2.03 LINK ZN ZN B 702 O HOH B 801 1555 1555 2.00 CISPEP 1 THR A 320 PRO A 321 0 -1.36 CISPEP 2 PHE A 486 ILE A 487 0 -5.08 CISPEP 3 THR B 320 PRO B 321 0 -2.45 CISPEP 4 PHE B 486 ILE B 487 0 -0.12 CRYST1 124.844 127.297 102.523 90.00 121.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008010 0.000000 0.004942 0.00000 SCALE2 0.000000 0.007856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011461 0.00000