HEADER TRANSFERASE/DNA 23-JAN-16 5HRE TITLE THE CRYSTAL STRUCTURE OF ASFVPOLX:DNA3 BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PO174L, POLX; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*AP*GP*GP*AP*TP*CP*CP*T)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: ASFV; SOURCE 4 ORGANISM_TAXID: 10497; SOURCE 5 GENE: O174L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ASFV, POLX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.Q.CHEN,J.ZHANG,J.H.GAN REVDAT 2 08-NOV-23 5HRE 1 LINK REVDAT 1 18-JAN-17 5HRE 0 JRNL AUTH Y.Q.CHEN,J.ZHANG,J.H.GAN JRNL TITL THE CRYSTAL STRUCTURE OF SE-ASFVPOLX(L52/163M MUTANT) IN JRNL TITL 2 COMPLEX WITH 1NT-GAP DNA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 22860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1229 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1426 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.87000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1644 ; 0.005 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 1598 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2245 ; 1.255 ; 1.901 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3670 ; 0.726 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 176 ; 4.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;31.851 ;23.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;12.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1663 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3241 ; 1.099 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 28 ;33.867 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3295 ; 6.192 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3917 28.1465 6.0101 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0145 REMARK 3 T33: 0.0341 T12: 0.0082 REMARK 3 T13: -0.0200 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.5974 L22: 1.6403 REMARK 3 L33: 1.4706 L12: 0.2537 REMARK 3 L13: 0.2701 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.1116 S13: 0.1961 REMARK 3 S21: 0.0111 S22: 0.0091 S23: 0.1035 REMARK 3 S31: -0.0872 S32: -0.0767 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5021 6.9745 14.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.1735 T22: 0.0157 REMARK 3 T33: 0.0685 T12: -0.0301 REMARK 3 T13: -0.0303 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 2.0008 L22: 1.9518 REMARK 3 L33: 2.0582 L12: -0.4542 REMARK 3 L13: -0.7183 L23: 0.6102 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0425 S13: -0.3164 REMARK 3 S21: 0.2770 S22: 0.0354 S23: 0.1254 REMARK 3 S31: 0.2822 S32: -0.1178 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0344 14.4491 -0.3777 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0296 REMARK 3 T33: 0.0213 T12: -0.0052 REMARK 3 T13: -0.0240 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.0058 L22: 0.1665 REMARK 3 L33: 0.2907 L12: -0.0598 REMARK 3 L13: -0.5346 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.1190 S13: -0.0252 REMARK 3 S21: -0.0136 S22: 0.0111 S23: -0.0348 REMARK 3 S31: 0.0235 S32: -0.0584 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.07200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.39250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.07200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.39250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 DG B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CD1 REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 32 NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 95 NZ REMARK 470 LYS A 132 CE NZ REMARK 470 LYS A 152 CD CE NZ REMARK 470 LYS A 171 CD CE NZ REMARK 470 LYS A 172 NZ REMARK 470 DT B 9 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 37 -159.64 -129.49 REMARK 500 VAL A 65 -73.01 -71.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 51 OD2 96.7 REMARK 620 3 FMT A 202 O2 164.3 85.9 REMARK 620 4 HOH A 306 O 83.6 83.8 81.3 REMARK 620 5 HOH A 320 O 87.5 171.3 88.0 89.2 REMARK 620 6 DT B 9 OP1 63.9 107.0 130.1 146.4 81.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HR9 RELATED DB: PDB REMARK 900 RELATED ID: 5HRB RELATED DB: PDB REMARK 900 RELATED ID: 5HRD RELATED DB: PDB REMARK 900 RELATED ID: 5HRF RELATED DB: PDB REMARK 900 RELATED ID: 5HRG RELATED DB: PDB REMARK 900 RELATED ID: 5HRH RELATED DB: PDB REMARK 900 RELATED ID: 5HRI RELATED DB: PDB REMARK 900 RELATED ID: 5HRK RELATED DB: PDB REMARK 900 RELATED ID: 5HRL RELATED DB: PDB DBREF1 5HRE A 1 174 UNP A0A0A1E3N6_ASF DBREF2 5HRE A A0A0A1E3N6 1 174 DBREF 5HRE B 1 9 PDB 5HRE 5HRE 1 9 SEQADV 5HRE SER A -3 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRE GLY A -2 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRE GLY A -1 UNP A0A0A1E3N EXPRESSION TAG SEQADV 5HRE GLY A 0 UNP A0A0A1E3N EXPRESSION TAG SEQRES 1 A 178 SER GLY GLY GLY MET LEU THR LEU ILE GLN GLY LYS LYS SEQRES 2 A 178 ILE VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR SEQRES 3 A 178 ASN GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL SEQRES 4 A 178 ALA VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN SEQRES 5 A 178 ASP VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU SEQRES 6 A 178 LEU LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SEQRES 7 A 178 SER PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL SEQRES 8 A 178 LEU PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP SEQRES 9 A 178 LEU PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE SEQRES 10 A 178 PHE HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE SEQRES 11 A 178 ARG ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN SEQRES 12 A 178 TYR GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS SEQRES 13 A 178 ILE THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE SEQRES 14 A 178 THR TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 B 9 DG DA DG DG DA DT DC DC DT HET MN A 201 1 HET FMT A 202 3 HET PO4 A 203 5 HET PO4 A 204 5 HETNAM MN MANGANESE (II) ION HETNAM FMT FORMIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 MN MN 2+ FORMUL 4 FMT C H2 O2 FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *122(H2 O) HELIX 1 AA1 LEU A 4 ARG A 15 1 12 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 VAL A 37 ARG A 42 1 6 HELIX 4 AA4 GLU A 58 LEU A 62 5 5 HELIX 5 AA5 VAL A 65 PRO A 67 5 3 HELIX 6 AA6 GLU A 108 GLY A 118 1 11 HELIX 7 AA7 PRO A 119 LYS A 133 1 15 HELIX 8 AA8 THR A 155 LEU A 163 1 9 HELIX 9 AA9 ILE A 169 ARG A 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 GLN A 25 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 TYR A 22 -1 N TYR A 22 O GLN A 25 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 ALA A 36 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 LYS A 95 LEU A 105 1 O ASP A 100 N VAL A 50 SHEET 4 AA3 5 LYS A 85 TRP A 92 -1 N CYS A 86 O LEU A 101 SHEET 5 AA3 5 PHE A 76 CYS A 81 -1 N LYS A 79 O VAL A 87 SHEET 1 AA4 3 TYR A 135 LEU A 137 0 SHEET 2 AA4 3 LEU A 142 LYS A 144 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 THR A 147 LEU A 148 -1 O THR A 147 N LYS A 144 SSBOND 1 CYS A 81 CYS A 86 1555 1555 2.06 LINK OD1 ASP A 49 MN MN A 201 1555 1555 2.10 LINK OD2 ASP A 51 MN MN A 201 1555 1555 2.08 LINK MN MN A 201 O2 FMT A 202 1555 1555 2.11 LINK MN MN A 201 O HOH A 306 1555 1555 2.29 LINK MN MN A 201 O HOH A 320 1555 1555 2.43 LINK MN MN A 201 OP1 DT B 9 2555 1555 2.05 CISPEP 1 GLY A 118 PRO A 119 0 -2.85 SITE 1 AC1 6 ASP A 49 ASP A 51 FMT A 202 HOH A 306 SITE 2 AC1 6 HOH A 320 DT B 9 SITE 1 AC2 8 GLY A 38 SER A 39 ARG A 42 ASP A 51 SITE 2 AC2 8 MN A 201 HOH A 306 HOH A 345 DT B 9 SITE 1 AC3 2 ARG A 41 HOH A 307 SITE 1 AC4 4 ILE A 113 THR A 155 GLU A 156 HOH A 381 CRYST1 64.144 88.785 43.349 90.00 94.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015590 0.000000 0.001257 0.00000 SCALE2 0.000000 0.011263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023143 0.00000